XLOC_016263


Basic Information

Item Value
gene id XLOC_016263
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 16502780 ~ 16506795 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032062
ACGCAAtaacttgcacagcattgaatggaaaaggctttgtccatgtccagttgaggggcatcaagaacacgcagatggcctaaacctgtgtcagcctggacagactgcagttctgctattccacgccaaggcttttgtatggatgtctgactactactgtgttctctaaaggtataactggagcaaaacaacagcatccgttacagtgaaatttgtgttcataaaagatagtgatatatgtgtaacaggtccagtacatttgtcataaaggttaaatcacaataagtattgtaaaaataacttgtttgcctttgccacaacaggtcatggtATGTGCATACTGCTCGTAGTAAACACACACGCTGATCTCATGCGGGAGAGATATAcgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatattcacagttgaaatcactgaagtcacatggaacgttttgacaatgtgttttgtgccttatcttgacaatgaccatcttgggaccattgctgtctgtagaggatgaggagcatttaatctaaaatattttagtttgtgttctgaagattaacaggtctctgggatgacacaagtaattaataacagaaactatatgaacacttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccctatgaacatgcaatttttatgatactaataataatggaataactAATTgctattactgttgtgtttgtgagagagaatcaaaccatatattctacacattttcttgatgatttactgaaatatttgtctacatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaacacaatagatgtactttatgcaaaaaaaaacaacaaaaaactactaaatatttagcatgcagacctgcaaagtgaaggagtaatgtcaggtttagattatagcaggagttttcactattgtgaaagtgaagccattcattcacaatgaattggaatagcaaacctcattattgattttgtaggaaactcacctggtgtttgagaaataaatatgtatttaactgctagacggatatagatgttttagtgttttacacttgattctttgtccccagtgccatcttttacctcaagtgtttctctcaacctataaaacctcaaacagatgtaatgtatttcacttgtgattcttagttgtgagtgatgttttttttttactgcagccactttaaaaatgggtattttgtaaactttgtaaacagaattgtattttggagacggtgatggttgaagcgtagtttagttacttagtttaatttagttagcatctgtctttctgaagacggtaacactttactaaaaggttgtattagtaagtgttaatgtatttactaacatgaacaaagatcAATGAAGtatctttcatataaagaaagtacagttcatgtcagctcagtgcattaatgttaacaagcatacattttgattttaatagcatcgggacatatttcaataaataaaatgattaataaatgctgtacaagtatttgttctttgttcatgttagtaaacattaactaactttaattcatgaaacctaattaaaaagtgactatttaattgtatgcctttttctgtatttgagtgtacatgtatagtaacctgcatggttttaatgaactatgtatgctgtaaatgttgctgtatatttagaataaatgaaataatgaggtgtgtattaaataaattgatacacaggctaa
>TCONS_00032061
AACGTACTCCAGAGACGCAAtaacttgcacagcattgaatggaaaaggctttgtccatgtccagttgaggggcatcaagaacacgcagatggcctaaacctgtgtcagcctggacagactgcagttctgctattccacgccaaggcttttgttttctggaagctccatttgagttcatcaaggacatactgatggcctaaaccagtgtcagcctagacagacagacagacatctattgcagttctgctacacaagaccaaactctctgcttttgtatggatgtctgactagtacgatgttctctaaaggtataactggagcaaaacaacagcatccgttacagtgaaatttgtgttcataaaagatagtgatatatgtgtaacaggtccagtacatttgtcataaaggttaaatcacaataagtattgtaaaaataacttgtttgcctttgccacaacaggtcatggtATGTGCATACTGCTCGTAGTAAACACACACGCTGATCTCATGCGGGAGAGATATAcgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatattcacagttgaaatcactgaagtcacatggaacgttttgacaatgtgttttgtgccttatcttgacaatgaccatcttgggaccattgctgtctgtagaggatgaggagcatttaatctaaaatattttagtttgtgttctgaagattaacaggtctctgggatgacacaagtaattaataacagaaactatatgaacacttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccctatgaacatgcaatttttatgatactaataataatggaataactAATTgctattactgttgtgtttgtgagagagaatcaaaccatatattctacacattttcttgatgatttactgaaatatttgtctacatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaacacaatagatgtactttatgcaaaaaaaaacaacaaaaaactactaaatatttagcatgcagacctgcaaagtgaaggagtaatgtcaggtttagattatagcaggagttttcactattgtgaaagtgaagccattcattcacaatgaattggaatagcaaacctcattattgattttgtaggaaactcacctggtgtttgagaaataaatatgtatttaactgctagacggatatagatgttttagtgttttacacttgattctttgtccccagtgccatcttttacctcaagtgtttctctcaacctataaaacctcaaacagatgtaatgtatttcacttgtgattcttagttgtgagtgatgttttttttttactgcagccactttaaaaatgggtattttgtaaactttgtaaacagaattgtattttggagacggtgatggttgaagcgtagtttagttacttagtttaatttagttagcatctgtctttctgaagacggtaacactttactaaaaggttgtattagtaagtgttaatgtatttactaacatgaacaaagatcAATGAAGtatctttcatataaagaaagtacagttcatgtcagctcagtgcattaatgttaacaagcatacattttgattttaatagcatcgggacatatttcaataaataaaatgattaataaatgctgtacaagtatttgttctttgttcatgttagtaaacattaactaactttaattcatgaaacctaattaaaaagtgactatttaattgtatgcctttttctgtatttgagtgtacatgtatagtaacctgcatggttttaatgaactatgtatgctgtaaatgttgctgtatatttagaataaatgaaataatgaggtgtgtattaaataaattgatacacaggctaa
>TCONS_00032060
ggcgcacgcggccgcgcgcagcgcttcacttcattaattacgaacacctgacctgcagtgcagcagaattcagaggtccagttgaggggcatcaagaacacgcagatggcctaaacctgtgtcagcctggacagactgcagttctgctattccacgccaaggcttttgtatggatgtctgactactactgtgttctctaaaggttttctggaagctccatttgagttcatcaaggacatactgatggcctaaaccagtgtcagcctagacagacagacagacatctattgcagttctgctacacaagaccaaactctctgcttttgtatggatgtctgactagtacgatgttctctaaaggtataactggagcaaaacaacagcatccgttacagtgaaatttgtgttcataaaagatagtgatatatgtgtaacaggtccagtacatttgtcataaaggttaaatcacaataagtattgtaaaaataacttgtttgcctttgccacaacaggtcatggtATGTGCATACTGCTCGTAGTAAACACACACGCTGATCTCATGCGGGAGAGATATAcgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatattcacagttgaaatcactgaagtcacatggaacgttttgacaatgtgttttgtgccttatcttgacaatgaccatcttgggaccattgctgtctgtagaggatgaggagcatttaatctaaaatattttagtttgtgttctgaagattaacaggtctctgggatgacacaagtaattaataacagaaactatatgaacacttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccctatgaacatgcaatttttatgatactaataataatggaataactAATTgctattactgttgtgtttgtgagagagaatcaaaccatatattctacacattttcttgatgatttactgaaatatttgtctacatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaacacaatagatgtactttatgcaaaaaaaaacaacaaaaaactactaaatatttagcatgcagacctgcaaagtgaaggagtaatgtcaggtttagattatagcaggagttttcactattgtgaaagtgaagccattcattcacaatgaattggaatagcaaacctcattattgattttgtaggaaactcacctggtgtttgagaaataaatatgtatttaactgctagacggatatagatgttttagtgttttacacttgattctttgtccccagtgccatcttttacctcaagtgtttctctcaacctataaaacctcaaacagatgtaatgtatttcacttgtgattcttagttgtgagtgatgttttttttttactgcagccactttaaaaatgggtattttgtaaactttgtaaacagaattgtattttggagacggtgatggttgaagcgtagtttagttacttagtttaatttagttagcatctgtctttctgaagacggtaacactttactaaaaggttgtattagtaagtgttaatgtatttactaacatgaacaaagatcAATGAAGtatctttcatataaagaaagtacagttcatgtcagctcagtgcattaatgttaacaagcatacattttgattttaatagcatcgggacatatttcaataaataaaatgattaataaatgctgtacaagtatttgttctttgttcatgttagtaaacattaactaactttaattcatgaaacctaattaaaaagtgactatttaattgtatgcctttttctgtatttgagtgtacatgtatagtaacctgcatggttttaatgaactatgtatgctgtaaatgttgctgtatatttagaataaatgaaataatgaggtgtgtattaaataaattgatacacaggctaa
>TCONS_00032059
cccagccggcacacgaccgaccttcaacgttgaaatatggttgaaataaggtcagacgtgttttgaacgttgaaataatgttgatagaacgtttaatgttgaacggttgaaaaacagcctgcatatgacaaggcttcaacgttgaaatgtggttgaaaatacgtcagtagttgctttaatgttgaaacaatgttgaatgataaatggttgaaaaaagttacagaaatccttgtacaaatcaacgttgacattttttttatcatgatctgtatgttgaattaacgtcatggcgtcacccaatattcaacatgtttggttaccatggtatcggaggactcggcgcacgcggccgcgcgcagcgcttcacttcattaattacgaacacctgacctgcagtgcagcagaattcagagacatGTAACTTAACGTACTCCAGAGACGCAAtaacttgcacagcattgaatggaaaaggctttgtccatgtccagttgaggggcatcaagaacacgcagatggcctaaacctgtgtcagcctggacagactgcagttctgctattccacgccaaggcttttgtatggatgtctgactactactgtgttctctaaaggttttctggaagctccatttgagttcatcaaggacatactgatggcctaaaccagtgtcagcctagacagacagacagacatctattgcagttctgctacacaagaccaaactctctgcttttgtatggatgtctgactagtacgatgttctctaaaggtataactggagcaaaacaacagcatccgttacagtgaaatttgtgttcataaaagatagtgatatatgtgtaacaggtccagtacatttgtcataaaggttaaatcacaataagtattgtaaaaataacttgtttgcctttgccacaacaggtcatggtATGTGCATACTGCTCGTAGTAAACACACACGCTGATCTCATGCGGGAGAGATATAcgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatattcacagttgaaatcactgaagtcacatggaacgttttgacaatgtgttttgtgccttatcttgacaatgaccatcttgggaccattgctgtctgtagaggatgaggagcatttaatctaaaatattttagtttgtgttctgaagattaacaggtctctgggatgacacaagtaattaataacagaaactatatgaacacttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccctatgaacatgcaatttttatgatactaataataatggaataactAATTgctattactgttgtgtttgtgagagagaatcaaaccatatattctacacattttcttgatgatttactgaaatatttgtctacatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaacacaatagatgtactttatgcaaaaaaaaacaacaaaaaactactaaatatttagcatgcagacctgcaaagtgaaggagtaatgtcaggtttagattatagcaggagttttcactattgtgaaagtgaagccattcattcacaatgaattggaatagcaaacctcattattgattttgtaggaaactcacctggtgtttgagaaataaatatgtatttaactgctagacggatatagatgttttagtgttttacacttgattctttgtccccagtgccatcttttacctcaagtgtttctctcaacctataaaacctcaaacagatgtaatgtatttcacttgtgattcttagttgtgagtgatgttttttttttactgcagccactttaaaaatgggtattttgtaaactttgtaaacagaattgtattttggagacggtgatggttgaagcgtagtttagttacttagtttaatttagttagcatctgtctttctgaagacggtaacactttactaaaaggttgtattagtaagtgttaatgtatttactaacatgaacaaagatcAATGAAGtatctttcatataaagaaagtacagttcatgtcagctcagtgcattaatgttaacaagcatacattttgattttaatagcatcgggacatatttcaataaataaaatgattaataaatgctgtacaagtatttgttctttgttcatgttagtaaacattaactaactttaattcatgaaacctaattaaaaagtgactatttaattgtatgcctttttctgtatttgagtgtacatgtatagtaacctgcatggttttaatgaactatgtatgctgtaaatgttgctgtatatttagaataaatgaaataatgaggtgtgtattaaataaattgatacacaggctaa
>TCONS_00033796
ttacgaacacctgacctgcagtgcagcagaattcagaggtaagcgtgtttttagatgctttaatgttttatttaccccccgattttgttttccacacagtgtatcttaaatgtgacttggtgtagtgtttcgaattttgaagcatttaaaactttccagtttggtttgtcttgtttgcgctccggtgacgcgcagctaacctcgaggtaatgtcacatgtttaacgttagtctaaatgagcgttttttatggcaaattcaaagcgataaactccaaacgcagtttaaagttactgagcaacgttataaaacaatatcctTTTTATACGCTGTataattagtgttattattacaaagtgaactgctttcgtttcactgttgttgttgtttttgcttttagacatGTAACTTAACGTACTCCAGAGACGCAAtaacttgcacagcattgaatggaaaaggctttgtccatgtaagtttacttttactttaactaagctatctgttaaatcttcttggtgctttggttggtgatattctctttctaatctgtttgtttattgattgttaggctatgttgtgatattatattgttatattgatattattattgtgaaatcatgttgtgatgttatactatgtgacagtattggggaaCAAATTTGTATTTAGTaagaaattaatgcttaaattacactttgtatagtagcagataagaggtgtaatgggttttaattttctggaaggtccagttgaggggcatcaagaacacgcagatggccta

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0009060 aerobic respiration biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00280 Valine, leucine and isoleucine degradation
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000094988

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032062 False 1819 lncRNA 0.34 3 16502780 16505996
TCONS_00032061 False 1956 lncRNA 0.34 3 16502780 16506010
TCONS_00032060 False 2008 lncRNA 0.35 3 16502780 16506457
TCONS_00032059 False 2415 lncRNA 0.36 4 16502780 16506795
TCONS_00033796 True 780 lncRNA 0.35 1 16505641 16506420

Neighbor

gene id symbol gene type direction distance location
XLOC_016262 atr coding downstream 53276 16384285 ~ 16449504 (-)
XLOC_016261 si:dkey-231j24.3 coding downstream 122497 16365768 ~ 16380283 (-)
XLOC_016260 arhgef4 coding downstream 143738 16198735 ~ 16359042 (-)
XLOC_016259 vav3b coding downstream 343289 15993389 ~ 16159491 (-)
XLOC_016258 NA coding downstream 852190 15637219 ~ 15650590 (-)
XLOC_016264 CR377211.4 coding upstream 2029 16508824 ~ 16512422 (-)
XLOC_016265 CR377211.2 coding upstream 6066 16512861 ~ 16519380 (-)
XLOC_016266 atp1b3a coding upstream 40911 16547706 ~ 16565690 (-)
XLOC_016267 CU929319.1 coding upstream 109145 16615940 ~ 16616055 (-)
XLOC_016268 clcn2a coding upstream 378490 16885285 ~ 17044959 (-)
XLOC_016253 CR392002.1 non-coding downstream 1395064 15102103 ~ 15107716 (-)
XLOC_016250 CR788249.3 non-coding downstream 1508290 14994393 ~ 14994490 (-)
XLOC_016248 NA non-coding downstream 1538561 14962493 ~ 14964219 (-)
XLOC_016247 CR788249.2 non-coding downstream 1562777 14938586 ~ 14940003 (-)
XLOC_016269 BX640595.1 non-coding upstream 437477 16944272 ~ 16944391 (-)
XLOC_016276 NA non-coding upstream 2593627 19100422 ~ 19109304 (-)
XLOC_016246 NA non-coding downstream 1553154 14933798 ~ 14949626 (-)

Expression


Co-expression Network