XLOC_016268 (clcn2a)


Basic Information

Item Value
gene id XLOC_016268
gene name clcn2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 16885285 ~ 17044959 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032070
ATGGCGCGTGACCGAGCGCCCCAGCGCGTGCTTCAGTACCAGCAAACTCTGATGTATGGACGCTATACACAGGAGCTGGGGGCCTATGCCAAAGAAGAGGCAGCTCGTCTGCGTGAGGATGGAGGGCTGCGGAGGACCACCAGCGTTCGCGGCCAGGCTCCAGAACTGCTGGAGTATGAGAAAGACCCATGTGCCAAGTGTCAAGTCTGTACATCACGCTGTAAGAAGTTCCTGATCTCCCGTGTGGGTGAAGACTGGATCTTCCTTATCCTCCTGGGGCTTCTCATGGCACTGGTCAGCTGGGCTATGGACTACACTATTGCCTTCTGCCAGCAAGCACAGAAGTGGATGTACCGCGGTCTGCACAGTAACATGTTGCTGCAGTATCTGGCCTGGGTCACGTACCCAGTGGTCCTCATCACCTTCTCCGCCGGCTTCACACAGATCTTGGCGCCACAGGCAGTGGGCTCTGGGATCCCAGAGATGAAGACCATCCTCCGAGGTGTGGTGCTGAAAGAGTACCTCACTTTCAAAACCTTCGTCGCCAAAGTGATTGGCTTAACTTGTGCCCTTGGAAGTGGCATGCCTCTGGGCAAAGAGGGACCGTTTGTTCACGTTGCCAGTCTGTGTGCTGCTCTGTTGAGCAAATTCATGGCCTTGTTTGGAGGAATCTACATGGAAGAGCCCTTTGAGGGAAACAAGAACGAGCTGAGAAACACAGAGATGCTGTCAGCTGCCTGTGCAGTGGGGGTGGGCTGTTGCTTTGCGGCCCCCATTGGAGGAGTGCTGTTTAGTATTGAGGTCACATCAACGTTCTTCGCCGTGAGGAACTACTGGAGAGGATTCTTCGCTGCAACCTTCAGTGCCTTTATCTTCAGGGTGCTGGCGGTGTGGAATAAGGATGAGGAGACCATCACGGCCCTCTTTAAAACACGCTTTCGACTGGATTTTCCTTTTGACCTACAAGAGCTTCCTGCTTTCGCTGTGCTCGGGATTGCCAGTGGTTTTGGAGGAGCATTGTATGTCTATCTGAACAGGATTATAGTGGAGTCTATGAGAAAGCAGAAAACTATCAACAAATTTTTGCTaaaaaaAAGACTAGTGTATCCAGCAGTGGTGACTCTTCTTATATCAACACTTACCTTTCCTCCAGGGTTTGGACAGTTCATGGCAGGCCAGCTGACTCAACATGAGTCACTGGTGGCACTGTTTGACAACCTGACCTGGTACAAGCAAGGTGTTGCTGAGGAGTTTGAGTACTCAAGTCACGTACCTCAGGCCTGGAAGCACCCACAAGTCAGTGTGTTTATCACACTCCTCCTCTTCATTGTCATGAAGTTCTGGATGTCAGCCGTGGCTACAACAATGCCTGTGCCTTGCGGGGCCTTCATGCCGGTGTTCCTCATTGGGGCCGCATTCGGTCGACTGGTGGGCGAAAGTATGGCAGCCTTCTTCCCCGACGGGATACACGCCGACAGCACTGTGTATCCTATAGTTCCCGGCGGTTACGCAGTTGTAGGGGCGGCGGCTCTTTCTGGCGCAGTCACTCACACCGTGTCCACCGCCGTCATCGTGTTCGAGCTGACCGGTCAAATCTCGCACATCCTGCCCGTGATGATCGCTGTGATCCTGGCCAATGCCGTGGCTCAGAGTCTACAGCCGTCCCTCTACGACTCCATCATCCGGATCCAGAAACTTCCCTATCTGCCAGAGCTGGGCTGGGGACAGGAGAAATATAATATCCGCGTGGAGGATATAATGGTGAGAGATGTGCGCTATATCACTCTCTCCTCCTCTTACCGGGACCTCCAGGAGGCACTTGTGACGGGCCAGCTTAAAACCCTGGCCCTCGTCGAGTCCAAAGAGTCCATGATCCTGCTGGGTTCGATCGAGCGCTCTCAGCTTCAGTCGCTGCTCTCTCAGCAGCTCGGCCGGCCCCGCAGGCTGGAGTATCTGAGAGAGCGagcacaggacaacggcacccaTGTGCCCACCTTCACACCGGATTCACCTCCCAAGGCTGGCCGCGGCGTACGTTTCCTGATCTCCACTGAAGAGTCCTCCTACAGCCCCACGTTGACTAACTCCCAGATCCCCCTCAAGTCTGCTCTGAAGACGGTGTCTGCAATCAGCAACACAGACTCACTCAACAGCTCTCCAAACCTCTCCTGCGGGGAACCTGTGAAGGAGCTAGTGGAGAGCAATGCTGGCCCCATGGCTCCTAAGAGGAGCAGGAGGCCCAAGCGCGTGAAGATACCCATGGCGGATACAGCTGATGTTGAAGATGACATGTCAACAGCAGAGaTTGCCGAGTGGGAGGAACAACAGTTGGATGAAGCTGTCAATTTTAACAACTGTAAAATAGACCCCGCTCCCTTTCAGCTAGTGGAACGGACATCATTACATAAGACACACACCATTTTTTCACTTCTTGGCCTGGATCATGCCTATGTCACCAGCACCGGACGTCTAGTAGGAGTCGTCTCTTTGAAAGAGCTACGTAAGGCCATTGAGGGCTCAGTAACCGTAACTGGTGTAAAGGTGCGTCCTCCGCTGGCTAGTTTCCGGGACAGTGGCAACAGCAGCAGCGTCTCGGAGGTCACTGAGCTCCACAAGCTCTGGAGTCGCCACAAGAGCCTATCTTTGCCACGGGAGATAAACCTCCCCGACCTTGATGACCAAACGGAGCAGCCATCCGAGGGCAGCCTGGTGAACGAAACTGAGTGCACAGAGCTTTCCAGTCAGAACAGCCCATTACACacagatgaccaatcagagctgcCCTACGCTGACACCTCACCCCAAGATGAGCCTCTGTCGCAGCTCCCATGTGACTGTCCAGAGGTGGAAGAGTCAGAATCTGTTGGTGAACACTGCCCAGAATCTACTGTGGTGGTGGGTGATGGAAACCCCTCGCCGTCAGATGGTCAGCCCGAATGACAGCTGCTGAACGATGGTAACACTCACTCCATTCACACCATAAGCTGGATTGTAGAGTCCGGTTGAGGAGAACCTGGAGGAAGTCTTTTAGCAGTGAAGCACACTTTCTGCTCCGTACTAATCAAAGCAACCCCAATCGCTGGTCCTGCCTTCACACAAGACACgccgtgtgtgtttgtatgcgtgGGATTTCATAGATACACACTGCTATTTGAGCTTCGGATACGATTTCAGAATGATCGTACAATTGTATGCGTGCTTTCATCATTTATTTGAGAGGTTTCATTGAGCGTTGATGGCTCAAGAGCGATCATTATTCAGCATTTCAGTTTTCATCATACACAActctgttgtttttttgtttacttgtggCTTCAGGATGCGTAAATCTTTGTTGACATTCATTGaaattaattactttaataaCGTCATGgcgtgga
>TCONS_00032071
ATGTATGGACGCTATACACAGGAGCTGGGGGCCTATGCCAAAGAAGAGGCAGCTCGTCTGCGTGAGGATGGAGGGCTGCGGAGGACCACCAGCGTTCGCGGCCAGGCTCCAGAACTGCTGGAGTATGAGAAAGACCCATGTGCCAAGTGTCAAGTCTGTACATCACGCTGTAAGAAGTTCCTGATCTCCCGTGTGGGTGAAGACTGGATCTTCCTTATCCTCCTGGGGCTTCTCATGGCACTGGTCAGCTGGGCTATGGACTACACTATTGCCTTCTGCCAGCAAGCACAGAAGTGGATGTACCGCGGTCTGCACAGTAACATGTTGCTGCAGTATCTGGCCTGGGTCACGTACCCAGTGGTCCTCATCACCTTCTCCGCCGGCTTCACACAGATCTTGGCGCCACAGGCAGTGGGCTCTGGGATCCCAGAGATGAAGACCATCCTCCGAGGTGTGGTGCTGAAAGAGTACCTCACTTTCAAAACCTTCGTCGCCAAAGTGATTGGCTTAACTTGTGCCCTTGGAAGTGGCATGCCTCTGGGCAAAGAGGGACCGTTTGTTCACGTTGCCAGTCTGTGTGCTGCTCTGTTGAGCAAATTCATGGCCTTGTTTGGAGGAATCTACATGAACGAGCTGAGAAACACAGAGATGCTGTCAGCTGCCTGTGCAGTGGGGGTGGGCTGTTGCTTTGCGGCCCCCATTGGAGGAGTGCTGTTTAGTATTGAGGTCACATCAACGTTCTTCGCCGTGAGGAACTACTGGAGAGGATTCTTCGCTGCAACCTTCAGTGCCTTTATCTTCAGGGTGCTGGCGGTGTGGAATAAGGATGAGGAGACCATCACGGCCCTCTTTAAAACACGCTTTCGACTGGATTTTCCTTTTGACCTACAAGAGCTTCCTGCTTTCGCTGTGCTCGGGATTGCCAGTGGTTTTGGAGGAGCATTGTATGTCTATCTGAACAGGATTATAGTGGAGTCTATGAGAAAGCAGAAAACTATCAACAAATTTTTGCTaaaaaaAAGACTAGTGTATCCAGCAGTGGTGACTCTTCTTATATCAACACTTACCTTTCCTCCAGGGTTTGGACAGTTCATGGCAGGCCAGCTGACTCAACATGAGTCACTGGTGGCACTGTTTGACAACCTGACCTGGTACAAGCAAGGTGTTGCTGAGGAGTTTGAGTACTCAAGTCACGTACCTCAGGCCTGGAAGCACCCACAAGTCAGTGTGTTTATCACACTCCTCCTCTTCATTGTCATGAAGTTCTGGATGTCAGCCGTGGCTACAACAATGCCTGTGCCTTGCGGGGCCTTCATGCCGGTGTTCCTCATTGGGGCCGCATTCGGTCGACTGGTGGGCGAAAGTATGGCAGCCTTCTTCCCCGACGGGATACACGCCGACAGCACTGTGTATCCTATAGTTCCCGGCGGTTACGCAGTTGTAGGGGCGGCGGCTCTTTCTGGCGCAGTCACTCACACCGTGTCCACCGCCGTCATCGTGTTCGAGCTGACCGGTCAAATCTCGCACATCCTGCCCGTGATGATCGCTGTGATCCTGGCCAATGCCGTGGCTCAGAGTCTACAGCCGTCCCTCTACGACTCCATCATCCGGATCCAGAAACTTCCCTATCTGCCAGAGCTGGGCTGGGGACAGGAGAAATATAATATCCGCGTGGAGGATATAATGGTGAGAGATGTGCGCTATATCACTCTCTCCTCCTCTTACCGGGACCTCCAGGAGGCACTTGTGACGGGCCAGCTTAAAACCCTGGCCCTCGTCGAGTCCAAAGAGTCCATGATCCTGCTGGGTTCGATCGAGCGCTCTCAGCTTCAGTCGCTGCTCTCTCAGCAGCTCGGCCGGCCCCGCAGGCTGGAGTATCTGAGAGAGCGagcacaggacaacggcacccaTGTGCCCACCTTCACACCGGATTCACCTCCCAAGGCTGGCCGCGGCGTACGTTTCCTGGT
>TCONS_00032072
TCTGTACATCACGCTGTAAGAAGTTCCTGATCTCCCGTGTGGGTGAAGACTGGATCTTCCTTATCCTCCTGGGGCTTCTCATGGCACTGGTCAGCTGGGCTATGGACTACACTATTGCCTTCTGCCAGCAAGCACAGAAGTGGATGTACCGCGGTCTGCACAGTAACATGTTGCTGCAGTATCTGGCCTGGGTCACGTACCCAGTGGTCCTCATCACCTTCTCCGCCGGCTTCACACAGATCTTGGCGCCACAGGCAGTGGGCTCTGGGATCCCAGAGATGAAGACCATCCTCCGAGGTGTGGTGCTGAAAGAGTACCTCACTTTCAAAACCTTCGTCGCCAAAGTGATTGGCTTAACTTGTGCCCTTGGAAGTGGCATGCCTCTGGGCAAAGAGGTGCATGAGATGGGGATATCTGATCCCAGATAAGCTCGCTAATGCTGCAATACTTTAAGCCCTTGGCCTGTGATCACATCTGTTATTTCAATCTCCTCTTGCGTCCTCTAGGGACCGTTTGTTCACGTTGCCAGTCTGTGTGCTGCTCTGTTGAGCAAATTCATGGCCTTGTTTGGAGGAATCTACATGGTGAGAAACGCCTCTAGTAAAGCTGTCATTTTTCAGTAACTTTCTGACATTTCATACATTGGCAACACTTTATTATAACTTCTATTAAGAACATTAGCATTGCCAAATATTGTTGTTGTGTTTCATAAAAACGCCGTTATATTAAACAATTAGATATTGCTTTGTTAAGCACtccaaaaaatgatgtttgctgtttgttcaaactatttatataaa

Function

symbol description
clcn2a Enables chloride channel activity. Predicted to be involved in chloride transport. Predicted to act upstream of or within transmembrane transport. Located in cell junction. Is expressed in several structures, including eye; gill; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in idiopathic generalized epilepsy 11 and primary hyperaldosteronism. Orthologous to human CLCN2 (chloride voltage-gated channel 2).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006821 chloride transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005247 voltage-gated chloride channel activity molecular_function
GO:0005254 chloride channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-19 Enables chloride channel activity. Predicted to be involved in chloride transport. Predicted to act upstream of or within transmembrane transport. Located in cell junction. Is expressed in several structures, including eye; gill; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in idiopathic generalized epilepsy 11 and primary hyperaldosteronism. Orthologous to human CLCN2 (chloride voltage-gated channel 2).

Ensembl:

ensembl_id ENSDARG00000062427

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032070 False 3380 mRNA 0.52 25 16885285 17044959
TCONS_00032071 False 1970 mRNA 0.54 16 16910557 16986894
TCONS_00032072 True 800 lncRNA 0.46 3 16933799 16941133

Neighbor

gene id symbol gene type direction distance location
XLOC_016267 CU929319.1 coding downstream 269230 16615940 ~ 16616055 (-)
XLOC_016266 atp1b3a coding downstream 319595 16547706 ~ 16565690 (-)
XLOC_016265 CR377211.2 coding downstream 365905 16512861 ~ 16519380 (-)
XLOC_016264 CR377211.4 coding downstream 372863 16508824 ~ 16512422 (-)
XLOC_016263 NA coding downstream 378490 16502780 ~ 16506795 (-)
XLOC_016270 pif1 coding upstream 51202 17096161 ~ 17115256 (-)
XLOC_016271 artnb coding upstream 155361 17200320 ~ 17235891 (-)
XLOC_016272 st3gal3b coding upstream 221800 17266759 ~ 17393971 (-)
XLOC_016273 kdm4ab coding upstream 405269 17450228 ~ 17492486 (-)
XLOC_016274 ptprfb coding upstream 533361 17578320 ~ 17947389 (-)
XLOC_016258 NA non-coding downstream 1234695 15637219 ~ 15650590 (-)
XLOC_016276 NA non-coding upstream 2055463 19100422 ~ 19109304 (-)
XLOC_016278 NA non-coding upstream 2107413 19152372 ~ 19181569 (-)
XLOC_016280 BX511079.1 non-coding upstream 2207311 19252270 ~ 19269297 (-)
XLOC_016282 BX511079.2 non-coding upstream 2317839 19362798 ~ 19363161 (-)
XLOC_016283 NA non-coding upstream 2334152 19379111 ~ 19382322 (-)

Expression


Co-expression Network