XLOC_016272 (st3gal3b)


Basic Information

Item Value
gene id XLOC_016272
gene name st3gal3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 17266759 ~ 17393971 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032078
TACTAGGATTTGAGACACGAATGTGCTAAGGACCATTATACCTCCCACTTAAAACGGTGATGTAAAAACACGGTACCATGTGAATGGTTGAGGAACATGAAGCCTGCACACAAACTACTGTTCGTCGTGTGTCCCATGCTGGTCTTGGGGTTCATCTACTACTCTTCTGGGAAGCTCCATTTGCACGTATGGGGCCAAAAGCCACTGTTTGATAAGCAAGGGTTCATGCTGAATCTGGACACAAAGCTGCCTCTGGATCTGGCGTACAAGTATGGAAACCTCAGTGAAGGAGCCTGCAAACCTGGCTATGCAGCTGCCAAAATGACTGCTATCTATCCAAAGTTTAGTAAGCCAGCTTCTATGTTTCTGGACCGAAACTTTAAGAGGCTTGCAAAAGTGATCAACTATTTACCTCCATTTGGATTCAGAACACAAGAAAGAATCATAGATGTTATATTATCCGCTACAAAGAATTATGGACTGGGTCCAGAACTGGATAGTTTGATTTGTAAAAGATGTATCATAGTGGGCAATGGCGGTATCCTTAGCAACAAGTCTTTAGGATCCCGcattgatgaatatgatgttgtGGTAAGACTCAATGAAGCCCCAGTGAGCGGTTACACCAGAGACGTAGGTAGTAAGACCACCATGAGGATTACCTACCCTGAGGGGGCCATCCAGAAGCCTGAGCGCTACGAGAAAGATTCGCTCTTTGTCTTCTCTGCTTTCAAACCTCTCGACTTTAAATGGCTGAGACAGATGGTCTACAAAGAGAAACTGCAAGGAACAGAGGGCTTCTGGAAGTCTGTAGCACGATATGTTCCCCGGGAACCCTCAGAAATACGGATTCTCAACCCCTACTTTATACAAGAGGCTGCCTTTCAGTTTATTGGCCTTCCACAGAACAATGGCCTCATGGGTAAAGGGAACATTCCAACGTTGGGCACCGTTGCCATTACGATGGCCCTACATAACTGCGATGAGGTCGCTGTTGCTGGATTTGGCTATGACATGAACACCCCTCATGCACCCTTGCACTACTACGAATCAGTCAAAATGTCTGCCATTAAAGAGTCATGGACTCACAACATCTCAAAGGAAAAGGAATTTCTCCGAAAGTTGGTGAAGGCCAACATCATTACAGACTTAACCAATGGGATTTGAACCTCCCAAGGTGGGTGCCTTTCTAGGAGGACTCGGGACGTCCTGGGAGCCGCCGAACCAGACAACAGTGAGAAGCAAGATTTCAGAAGTGGGAGCGATGGCTCAGTTAAGACGTGCCTTCTAAACCGACAGGCTTCCTCTGAGCGGGATGTTGAAGGCTTCTTGAATGTCTCAGGAGAAAATCCTTGATGGAGTGTTGGAGGATGGAAGATTTTGAAGTGACCGCCACAAACAGCGCTTGAGGAACTAGTCGCAACAGTAACTGATTGTGCCAAATGTACCTCTATCAGAGGAGACGCCCCCTCCTCTCCTGCCTGAATGTATTAACGGTGTAAATATCAAAGATTTTTACTGTGCATTTTATCAGACTGCTATGGCCCCTAGGGTCCTGCCTTCACACGCGGTTCTCCGTCCAGTGCACTCAGTGCGTATCCTTTTCCCCGGTGTGTGGAAGGGCAGAGGCAGGTCTTTTGATTCAGCCCTTCACCTGAGCACAGGAGGCTCTTTATCTCCTGAATGTGAGCTTATTATGGTAAAGCTTCTTTTGTAGAGGAAAGGAGCTCAGTCTAtaagttatttattttggtgCACAAATGAAGGCCTTTGttttatgtgcgtgtgtgtgtgtgtgtgtgtgtttttgaagcCCCATTTCCAAAATGACACTTGTTTTAAATAACCATCACCACACTTTGCTTTAGGAGTAcctattagggatgcaccgatgcCCTTTTTGATTCCAAGACTTGAATTTCTGATATTGGCCGCTACCTCACTTTGTTAGTAATTGATAGGGCAGTTGATTTAAAAGTGATGTGTAATGTAGTAATATATGTAGTAATGTTTCCTCATACTAGGCTTACCGGGCAATGAAGGATGAAAAATACACTACTTAACTACA
>TCONS_00032079
GTAACATTTCGCCTTTATATGGATGGTCAAAAGTAGACTATATGTTTAAGTATTTTGCACTGTAgccttaaaataaaatcatttattatcAGTATAGGCGGTTCTATTCTAGCTCTCTTTGCCTTTTCATGGAGAGTTCAATGAGTCGAAAGCTTTGAAAGATTCGGACTGGGCTTGTAAACTAGTAGTTAACTTGTAGTCGATTCGTTAAAAGGATTCGCTGAGACCTTGAAGCTGGTTCGCATTTTTGGAATGAGTAGACACCATCAGCGCGTAGGATGTccccaaaaatgtgtttaaaatatttataggtAGTTTGCTTACTAGGATTTGAGACACGAATGTGCTAAGGACCATTATACCTCCCACTTAAAACGGCAAgtagagggagagagaaagggagCTAGAGGAGGGGAGGGTGATTCCCAAATAAACCAACACGCAGCTTCTCTCTCGCTGCGTTGAGTAGGTAACAAAGTATCCTCGTAAATTGTATCAAAAAAAAAGGATGGACAGAAACGGCGGAGTGCAAGAAAAATGTGGTCGATAGCATTTTAACCCGAGGGTCTTGACGACTGATGTGGACAGGTGATGTAAAAACACGGTACCATGTGAATGGTTGAGGAACATGAAGCCTGCACACAAACTACTGTTCGTCGTGTGTCCCATGCTGGTCTTGGGGTTCATCTACTACTCTTCTGGGAAGCTCCATTTGCACGTATGGGGCCAAAAGCCACTGTTTGATAAGCAAGGGTTCATGCTGAATCTGGACACAAAGCTGCCTCTGGATCTGGCGTACAAGTATGGAAACCTCAGTGAAGGAGCCTGCAAACCTGGCTATGCAGCTGCCAAAATGACTGCTATCTATCCAAAGTTTAGTAAGCCAGCTTCTATGTTTCTGGACCGAAACTTTAAGAGGCTTGCAAAAGTGATCAACTATTTACCTCCATTTGGATTCAGAACACAAGAAAGAATCATAGATGTTATATTATCCGCTACAAAGAATTATGGACTGGGTCCAGAACTGGATAGTTTGATTTGTAAAAGATGTATCATAGTGGGCAATGGCGGTATCCTTAGCAACAAGTCTTTAGGATCCCGcattgatgaatatgatgttgtGGTAAGACTCAATGAAGCCCCAGTGAGCGGTTACACCAGAGACGTAGGTAGTAAGACCACCATGAGGATTACCTACCCTGAGGGGGCCATCCAGAAGCCTGAGCGCTACGAGAAAGATTCGCTCTTTGTCTTCTCTGCTTTCAAACCTCTCGACTTTAAATGGCTGAGACAGATGGTCTACAAAGAGAAACTGCAAGGAACAGAGGGCTTCTGGAAGTCTGTAGCACGATATGTTCCCCGGGAACCCTCAGAAATACGGATTCTCAACCCCTACTTTATACAAGAGGCTGCCTTTCAGTTTATTGGCCTTCCACAGAACAATGGCCTCATGGGTAAAGGGAACATTCCAACGTTGGGCACCGTTGCCATTACGATGGCCCTACATAACTGCGATGAGGTCGCTGTTGCTGGATTTGGCTATGACATGAACACCCCTCATGCACCCTTGCACTACTACGAATCAGTCAAAATGTCTGCCATTAAAGAGTCATGGACTCACAACATCTCAAAGGAAAAGGAATTTCTCCGAAAGTTGGTGAAGGCCAACATCATTACAGACTTAACCAATGGGATTTGA
>TCONS_00032080
AATACATAGGCTGGTCTCAAAATACATAGGCTATATGGCTGGTCTTTctagttaaaaaaaatgtctaaaacatGTGTAGAGCTGCTTTAACTAAACTAAAACGCTGCTCATTTGCATATATAAAAGACAAACCGAGCTCATCATTAGCACACAATTGCAAAGATATAATGCAATAGCTGACGAGGAGAGACTGCCACGTGGGGAACAGAAAGACGAACCGCCGATGAAAAGATGCATTCACGGCAATGAAACTGCCAGATAACAGTATATATATTCTAAGCACTCATGTGACAAACTCTGTACCAAATATTTGCTGAAGGCACAACAAAAATGAGGTGATGTAAAAACACGGTACCATGTGAATGGTTGAGGAACATGAAGCCTGCACACAAACTACTGTTCGTCGTGTGTCCCATGCTGGTCTTGGGGTTCATCTACTACTCTTCTGGGAAGCTCCATTTGCACGTATGGGGCCAAAAGCCACTGTTTGATAAGCAAGGGTTCATGCTGAATCTGGACACAAAGCTGCCTCTGGATCTGGCGTACAAGTATGGAAACCTCAGTGAAGGAGCCTGCAAACCTGGCTATGCAGCTGCCAAAATGACTGCTATCTATCCAAAGTTTAGTAAGCCAGCTTCTATGTTTCTGGACCGAAACTTTAAGAGGCTTGCAAAAGTGATCAACTATTTACCTCCATTTGGATTCAGAACACAAGAAAGAATCATAGATGTTATATTATCCGCTACAAAGAATTATGGACTGGGTCCAGAACTGGATAGTTTGATTTGTAAAAGATGTATCATAGTGGGCAATGGCGGTATCCTTAGCAACAAGTCTTTAGGATCCCGcattgatgaatatgatgttgtGGTAAGACTCAATGAAGCCCCAGTGAGCGGTTACACCAGAGACGTAGGTAGTAAGACCACCATGAGGATTACCTACCCTGAGGGGGCCATCCAGAAGCCTGAGCGCTACGAGAAAGATTCGCTCTTTGTCTTCTCTGCTTTCAAACCTCTCGACTTTAAATGGCTGAGACAGATGGTCTACAAAGAGAAACTGCAAGGAACAGAGGGCTTCTGGAAGTCTGTAGCACGATATGTTCCCCGGGAACCCTCAGAAATACGGATTCTCAACCCCTACTTTATACAAGAGGCTGCCTTTCAGTTTATTGGCCTTCCACAGAACAATGGCCTCATGGGTAAAGGGAACATTCCAACGTTGGGCACCGTTGCCATTACGATGGCCCTACATAACTGCGATGAGGTCGCTGTTGCTGGATTTGGCTATGACATGAACACCCCTCATGCACCCTTGCACTACTACGAATCAGTCAAAATGTCTGCCATTAAAGAGTCATGGACTCACAACATCTCAAAGGAAAAGGAATTTCTCCGAAAGTTGGTGAAGGCCAACATCATTACAGACTTAACCAATGGGATTTGA
>TCONS_00032081
GGTGATTCCCAAATAAACCAACACGCAGCTTCTCTCTCGCTGCGTTGAGTAGGTAACAAAGTATCCTCGTAAATTGTATCAAAAAAAAAGGATGGACAGAAACGGCGGAGTGCAAGAAAAATGTGGTCGATAGCATTTTAACCCGAGGGTCTTGACGACTGATGTGGACAGGTGATGTAAAAACACGGTACCATGTGAATGGTTGAGGAACATGAAGCCTGCACACAAACTACTGTTCGTCGTGTGTCCCATGCTGGTCTTGGGGTTCATCTACTACTCTTCTGGGAAGCTCCATTTGCACGTATGGGGCCAAAAGCCACATAAAGATGTGGAGTCCACAGTAAATGTCAGTAAAGTAACTAGTGTTGCTGTCAGAGCCACAGTGACAAAAGAGCCGGTGGCGGAAGGCGCAGTCTCCGTGGGACGAATAGTAGGCTCAGTGTTTGATAAGCAAGGGTTCATGCTGAATCTGGACACAAAGCTGCCTCTGGATCTGGCGTACAAGTATGGAAACCTCAGTGAAGGAGCCTGCAAACCTGGCTATGCAGCTGCCAAAATGACTGCTATCTATCCAAAGTTTAGTAAGCCAGCTTCTATGTTTCTGGACCGAAACTTTAAGAGGCTTGCAAAAGTGATCAACTATTTACCTCCATTTGGATTCAGAACACAAGAAAGAATCATAGATGTTATATTATCCGCTACAAAGAATTATGGACTGGGTCCAGAACTGGATAGTTTGATTTGTAAAAGATGTATCATAGTGGGCAATGGCGGTATCCTTAGCAACAAGTCTTTAGGATCCCGcattgatgaatatgatgttgtGGTAAGACTCAATGAAGCCCCAGTGAGCGGTTACACCAGAGACGTAGGTAGTAAGACCACCATGAGGATTACCTACCCTGAGGGGGCCATCCAGAAGCCTG
>TCONS_00032082
GGAGGGGAGGGTGATTCCCAAATAAACCAACACGCAGCTTCTCTCTCGCTGCGTTGAGTAGGTAACAAAGTATCCTCGTAAATTGTATCAAAAAAAAAGGATGGACAGAAACGGCGGAGTGCAAGAAAAATGTGGTCGATAGCATTTTAACCCGAGGGTCTTGACGACTGATGTGGACAGGTGATGTAAAAACACGGTACCATGTGAATGGTTGAGGAACATGAAGCCTGCACACAAACTACTGTTCGTCGTGTGTCCCATGCTGGTCTTGGGGTTCATCTACTACTCTTCTGGGAAGCTCCATTTGCACGTATGGGGCCAAAAGCCACAGCCGGTGGCGGAAGGCGCAGTCTCCGTGGGACGAATAGTAGGCTCAGTGTTTGATAAGCAAGGGTTCATGCTGAATCTGGACACAAAGCTGCCTCTGGATCTGGCGTACAAGTATGGAAACCTCAGTGAAGGAGCCTGCAAACCTGGCTATGCAGCTGCCAAAATGACTGCTATCTATCCAAAGTATGTACACATCTCTTTATAAGATGCAATACACagtgcttaa
>TCONS_00032083
AAAAAAAAAGGATGGACAGAAACGGCGGAGTGCAAGAAAAATGTGGTCGATAGCATTTTAACCCGAGGGTCTTGACGACTGATGTGGACAGGTGATGTAAAAACACGGTACCATGTGAATGGTTGAGGAACATGAAGCCTGCACACAAACTACTGTTCGTCGTGTGTCCCATGCTGGTCTTGGGGTTCATCTACTACTCTTCTGGGAAGCTCCATTTGCACGTATGGGGCCAAAAGCCACATAAAGATGTGGAGTCCACAGTAAATGTCAGTAAAGTAACTAGTGTTGCTGTCAGAGCCACAGTGACAAAAGAGCCGGTGGCGGAAGGCGCAGTCTCCGTGGGACGAATAGTAGGCTCAGGTACAGCCTTACAGCAAAGAGTGCACTCTGGTCAACATCAAACCCCCCCAGCTGCTATTATAGGAGATCTGGTTGTTCTGGGATAATGTCCTCCTATTCATTACACATGGAAAGGCTTTTTCACATCAAAAGAATATGCATCTTGTTttccaaataac

Function

symbol description
st3gal3b Predicted to enable N-acetyllactosaminide alpha-2,3-sialyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; corpuscles of Stannius; hypochord; pleuroperitoneal region; and ventral mesoderm. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability and developmental and epileptic encephalopathy 15. Orthologous to human ST3GAL3 (ST3 beta-galactoside alpha-2,3-sialyltransferase 3).

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008118 N-acetyllactosaminide alpha-2,3-sialyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050411-13 Predicted to enable N-acetyllactosaminide alpha-2,3-sialyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; corpuscles of Stannius; hypochord; pleuroperitoneal region; and ventral mesoderm. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability and developmental and epileptic encephalopathy 15. Orthologous to human ST3GAL3 (ST3 beta-galactoside alpha-2,3-sialyltransferase 3).

Ensembl:

ensembl_id ENSDARG00000015252

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032078 False 2068 mRNA 0.45 11 17266759 17392895
TCONS_00032079 False 1699 mRNA 0.44 11 17267660 17393216
TCONS_00032080 False 1446 mRNA 0.44 11 17267660 17393971
TCONS_00032081 False 926 mRNA 0.46 10 17317763 17392799
TCONS_00032082 False 556 processed_transcript 0.48 5 17339418 17392808
TCONS_00032083 True 518 processed_transcript 0.46 4 17353831 17392719

Neighbor

gene id symbol gene type direction distance location
XLOC_016271 artnb coding downstream 30868 17200320 ~ 17235891 (-)
XLOC_016270 pif1 coding downstream 151503 17096161 ~ 17115256 (-)
XLOC_016268 clcn2a coding downstream 221800 16885285 ~ 17044959 (-)
XLOC_016269 BX640595.1 coding downstream 322368 16944272 ~ 16944391 (-)
XLOC_016267 CU929319.1 coding downstream 650704 16615940 ~ 16616055 (-)
XLOC_016273 kdm4ab coding upstream 56257 17450228 ~ 17492486 (-)
XLOC_016274 ptprfb coding upstream 184349 17578320 ~ 17947389 (-)
XLOC_016275 pbx1a coding upstream 1304417 18698388 ~ 18830794 (-)
XLOC_016276 NA coding upstream 1706451 19100422 ~ 19109304 (-)
XLOC_016277 kncn coding upstream 1725876 19119847 ~ 19128385 (-)
XLOC_016265 CR377211.2 non-coding downstream 747379 16512861 ~ 16519380 (-)
XLOC_016264 CR377211.4 non-coding downstream 754337 16508824 ~ 16512422 (-)
XLOC_016263 NA non-coding downstream 759964 16502780 ~ 16506795 (-)
XLOC_016278 NA non-coding upstream 1758401 19152372 ~ 19181569 (-)
XLOC_016280 BX511079.1 non-coding upstream 1858299 19252270 ~ 19269297 (-)
XLOC_016282 BX511079.2 non-coding upstream 1968827 19362798 ~ 19363161 (-)
XLOC_016283 NA non-coding upstream 1985140 19379111 ~ 19382322 (-)

Expression


Co-expression Network