XLOC_016277 (kncn)


Basic Information

Item Value
gene id XLOC_016277
gene name kncn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19119847 ~ 19128385 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032098
AATATGCACATCATATTAGTACACATAAAGGATGACAACAACCTCTGTTTTTCTCTGTTTGTGCTCTGCAGGTCTCCTCATTTCAGTCTACCCGTTCATACGAGCATGGTTCAACTTCCATCATATACTGCCCAATATAGGCAACTTCAGAGTGCACCCAATGGCTACAAACTCAAATCCAGCCCCTGAACAGCCAGCGGCTATTCTCACACGAGAGGGGACTCAAAGTCAGCTTAATGTAGAGCGCTCGAAAAGTCGTATGGGGACATTCGTGGAGACAGCAGCTTCAACAGCCGCCGAGGGCTCACAGGATGACGGgCCTTCAGCTGATGTTCCAGATATCTTGGGCAGGCGAAAGTTTAAGTCACCATCTTCTGATCAAGAATAATGACTGGATCCAGGAGTCTCATTAAAGAGCAAACAGTATTCATTTCACTATAAGCAAAGCTGATCTCTGCTTACAGCTCATTACAGTGTGCAATCTGATATCACACATATAAACAGTGTGTCTGATATAAAATGAAAACAGTGTTTGATGAAAGCGGGTTGAAAATCATGCAGAAGCAACAGCCATGTTAATGAAGAaagaaaaattctgtcattatttacttactaTAATGGTTGACATTGGGGCTGGGTAATGGGacggggtggggggggggtcCAATTCCATTGACATATCAGAAAAACAATCTAGTGCTCTGTAGTACTtggttattgcaataaaaatatcAATTGGAGTGTCA

Function

symbol description
kncn Orthologous to human KNCN (kinocilin).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-385 Orthologous to human KNCN (kinocilin).

Ensembl:

ensembl_id ENSDARG00000101899

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032098 True 746 mRNA 0.43 4 19119847 19128385

Neighbor

gene id symbol gene type direction distance location
XLOC_016276 NA coding downstream 10543 19100422 ~ 19109304 (-)
XLOC_016275 pbx1a coding downstream 289053 18698388 ~ 18830794 (-)
XLOC_016274 ptprfb coding downstream 1172458 17578320 ~ 17947389 (-)
XLOC_016273 kdm4ab coding downstream 1627361 17450228 ~ 17492486 (-)
XLOC_016272 st3gal3b coding downstream 1725876 17266759 ~ 17393971 (-)
XLOC_016278 NA coding upstream 23987 19152372 ~ 19181569 (-)
XLOC_016279 cdc20 coding upstream 89201 19217586 ~ 19234469 (-)
XLOC_016280 BX511079.1 coding upstream 123885 19252270 ~ 19269297 (-)
XLOC_016281 zfyve9a coding upstream 152444 19280829 ~ 19354622 (-)
XLOC_016282 BX511079.2 coding upstream 234413 19362798 ~ 19363161 (-)
XLOC_016269 BX640595.1 non-coding downstream 2175456 16944272 ~ 16944391 (-)
XLOC_016267 CU929319.1 non-coding downstream 2503792 16615940 ~ 16616055 (-)
XLOC_016265 CR377211.2 non-coding downstream 2600467 16512861 ~ 16519380 (-)
XLOC_016264 CR377211.4 non-coding downstream 2607425 16508824 ~ 16512422 (-)
XLOC_016283 NA non-coding upstream 250726 19379111 ~ 19382322 (-)
XLOC_016284 BX664750.1 non-coding upstream 377926 19506311 ~ 19513296 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_04375211_04379590 NA coding CI01000004 null 4375110 ~ 4379590 (-)