XLOC_016279 (cdc20)


Basic Information

Item Value
gene id XLOC_016279
gene name cdc20
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19217586 ~ 19234469 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032100
TTTTGCACATTTAAACTGGTGTTCATACGATTTCTCCCTTCAGCTGCTCAGATGTTTGTTGAATTCACAAGCGGAACTACGAAAAACCTCACAAAACCTGTACATCAGAGTGTCTGATACTGAGATCTAGATACGGAGATATTTTTGCAGAACTTCGGAAAAACATTGTTGGAATTGTGTTACCAAAACTGCAACAGAAATGTCTCAGTTTGGGTTTGAGAACGACATTCACAACGTTCTCCGGCTAGATATGCCCATCACCAACGCCCCGATGGCGAGATGGCAGAGGAAAGCCAGCACTTCAAACTCAAGCAGCACAAACTCAATCTCGCCCAACAAGAGCGTTAACAGATCCGTGAGCCTTTCCAAAACACCCAGTAAAACACCAGGGAAAAATGGCAAGACCCAAAACACCCCCTCTAAGGCAGGAGGAGATCGGTACATCCCAACAAGAAATAACAAGCAGTTGGATGTTGCGAGTTTTCTTATTTCTAAAGAGAATGAGCCGGTGGAAGAAAGTGAGCCCTCTACTGCGCCAAATCAGAAGGCTTGGTCTATGTCACTAAATGGATATGACATTGAGGAAGCAAAGATTTTACATTTGGGAGGAAAACCGCTTTACGCACCAGAggGTTATCAGAATAATTTGAAGGTTCTGTACAGTCAGGTGCCCACACCAGTCTCTGTCAAGAAGAGCCGGTACATTTCCTCTTATCCTGAACGGATTCTAGATGCCCCTGATATTAGAAATGACTTCTACCTAAACCTTATGGATTGGGGAAGGCAGAACGTGTTGGCAGTTGGTCTGGCTAATCAAGTGTATTTGTGGGATGCTGGTGAAGGAGACATTGTGTTACTGAAGAAAATGGAGGATGATAATGAATACATCTGTTCTGTCTCGTGGAGCAAAGATGGCAATTTCTTGGCTATTGGAACCAGTGACTGTAAAGTTGAGttatggGATGTTCAGTATCAAAAGCGTCTCCGTAGCATGGATGGTCATTCAGCAAGGGTGGGCTGCTTGAGTTGGAACGATCACATCTTGTCAAGTGGCTCCAGGTCTGGATTGATTCATCAACATGATGTTCGGGTAGCAGACCACCACATCTTTACCTTCGGCGGACACACCCAGGAAGTCTGTGGCCTTACCTGGTCTCCAGATGGGAGATATTTAGCTAGTGGTGGTAATGATAACATGGTGTACATTTGGCCAATGACAACAGGCTCAGAGAATCAAGCTATACATGCTCTCAGTGAACACCAGGGGGCAGTCAAGGCTTTGGCGTGGTGTCCTTGGCAGCCTAACATTCTTGCATCAGGAGGGGGCACCAGTGATCGTCATATTCGCATCTGGAATGCTTCCAGTGGCTCTTGTATCAGCTCCTTGGATACTTGTTCACAGGTTTCTTCTCTTGTTTTTGCACCCAATTACAAAGAATTGGTGTCGGGCCATGGCTTTGCACATGACAAGGTTGTCATCTGGAAATACCCCTCATTCGCCAAAGTTACAGAGCACGAAGGACATGAAGCCAGGATCCTCAACTTGGCACTGAGTCCAGACGGTTCCACGCTGGCTTCAATTGCAGCTGACGAAACCATCAGACTTTGGAAGTGTTTTGAAAAGGAAAAGGATGCTGCCAAGAAACCGAAGCAGGCCAGTGGCAGGATCGTTCAACAAAGTATCCGATAAttttgaaatgctcatttttaatGCCTCCAGCAAACAGCAGTTGGATGTTTCTTTTGAACACCTCCAAATGTTCATTAGAAGCTCCCCTTTAGGTTTGGGTTTTCAAGAACTTGTTCATGTATGCTGTGCCGTCAAGCTCTACACTAGATTTTATTGGACACCTTTCTTGTTTGCGTTCTCGGAGGCGTAATGTTTTTAAAGGGATGAGCATGGCTGCTAAATGGGATTACTAGAACACCATGTCCTTTGAAAGTTAACTTTTCAGTGACTTTCATACTGACATTTTTGCATATTTAACCATCAATGATCTTTAAGTTATGTACAGTAATGTaagttttgcaaataaagtttAAGAGTAATTGCGTCTGTCTTTTCATATGTATTTTGTAATTGCATTGTAATTGATGTTCTGATTTAATAGTGGTTTAAACTTGTAACAATCACTTGTGTTAGCTTTTTGCAGTGTTTACCATACTGGCAGTTTGTTGAATTAAATTCCTCAGTCTCCTGG
>TCONS_00032101
ACCAGATAAAGCGATTCACCAATCAGCGCGCAGCATTGTGCCTCGGTGCCTTGGTAACAGCAAAAACCTTTGTTTTTTGAATTGACCAATCACGGCACGCGTTTTGCACATTTAAACTGGTGTTCATACGATTTCTCCCTTCAGCTGCTCAGATGTTTGTTGAATTCACAAGCGGAACTACGAAAAACCTCACAAAACCTGTACATCAGAGTGTCTGATACTGAGATCTAGATACGGAGATATTTTTGCAGAACTTCGGAAAAACATTGTTGGAATTGTGGTAAGATTGAATATAAAGGAACCTTATGTTTTATTAAACGCACTGAGTTCAGTTTCAGCAATCCGCAGCCTAGTTAACTGTTAACTTTAGTTGCATGAATGTGCTTTGGAACgcatgatgtgttttttttaattttattttaggctAAAGCTTATGTagactttaatgtttattgctttattttttgttctacatcataaaattaactttactgaacttttaTCGCGTTTCTTTACACACATGGTACGTattcttaataaaataaacaatttaatatttcatCACATTCTTCTGCAGAGTTACCAAAACTGCAACAGAAATGTCTCAGTTTGGGTTTGAGAACGACATTCACAACGTTCTCCGGCTAGATATGCCCATCACCAACGCCCCGATGGCGAGATGGCAGAGGAAAGCCAGCACTTCAAACTCAAGCAGCACAAACTCAATCTCGCCCAACAAGAGCGTTAACAGATCCGTGAGCCTTTCCAAAACACCCAGTAAAACACCAGGGAAAAATGGCAAGACCCAAAACACCCCCTCTAAGGCAGGAGGAGATCGGTACATCCCAACAAGAAATAACAAGCAGTTGGATGTTGCGAGTTTTCTTATTTCTAAAGAGAATGAGCCGGTGGAAGAAAGTGAGCCCTCTACTGCGCCAAATCAGAAGGCTTGGTCTATGTCACTAAATGGATATGACATTGAGGAAGCAAAGATTTTACATTTGGGAGGAAAACCGCTTTACGCACCAGAggGTTATCAGAATAATTTGAAGGTTCTGTACAGTCAGGTGCCCACACCAGTCTCTGTCAAGAAGAGCCGGTACATTTCCTCTTATCCTGAACGGATTCTAGATGCCCCTGATATTAGAAATGACTTCTACCTAAACCTTATGGATTGGGGAAGGCAGAACGTGTTGGCAGTTGGTCTGGCTAATCAAGTGTATTTGTGGGATGCTGGTGAAGGAGACATTGTGTTACTGAAGAAAATGGAGGATGATAATGAATACATCTGTTCTGTCTCGTGGAGCAAAGATGGCAATTTCTTGGCTATTGGAACCAGTGACTGTAAAGTTGAGttatggGATGTTCAGTATCAAAAGCGTCTCCGTAGCATGGATGGTCATTCAGCAAGGGTGGGCTGCTTGAGTTGGAACGATCACATCTTGTCAAGTGGCTCCAGGTCTGGATTGATTCATCAACATGATGTTCGGGTAGCAGACCACCACATCTTTACCTTCGGCGGACACACCCAGGAAGTCTGTGGCCTTACCTGGTCTCCAGATGGGAGATATTTAGCTAGTGGTGGTAATGATAACATGGTGTACATTTGGCCAATGACAACAGGCTCAGAGAATCAAGCTATACATGCTCTCAGTGAACACCAGGGGGCAGTCAAGGCTTTGGCGTGGTGTCCTTGGCAGCCTAACATTCTTGCATCAGGAGGGGGCACCAGTGATCGTCATATTCGCATCTGGAATGCTTCCAGTGGCTCTTGTATCAGCTCCTTGGATACTTGTTCACAGGTTTCTTCTCTTGTTTTTGCACCCAATTACAAAGAATTGGTGTCGGGCCATGGCTTTGCACATGACAAGGTTGTCATCTGGAAATACCCCTCATTCGCCAAAGTTACAGAGCACGAAGGACATGAAGCCAGGATCCTCAACTTGGCACTGAGTCCAGACGGTTCCACGCTGGCTTCAATTGCAGCTGACGAAACCATCAGACTTTGGAAGTGTTTTGAAAAGGAAAAGGATGCTGCCAAGAAACCGAAGCAGGCCAGTGGCAGGATCGTTCAACAAAGTATCCGATAAttttgaaatgctcatttttaatGCCTCCAGCAAACAGCAGTTGGATGTTTCTTTTGAACACCTCCAAATGTTCATTAGAAGCTCCCCTTTAGGTTTGGGTTTTCAAGAACTTGTTCATGTATGCTGTGCCGTCAAGCTCTACACTAGATTTTATTGGACACCTTTCTTGTTTGCGTTCTCGGAGGCGTAATGTTTTTAAAGGGATGAGCATGGCTGCTAAATGGGATTACTAGAACACCATGTCCTTTGAAAGTTAACTTTTCAGTGACTTTCATACTGACATTTTTGCATATTTAACCATCAATGATCTTTAAGTTATGTACAGTAATGTaagttttgcaaataaagtttAAGAGTAATTGCGTCTGTCTTTTCATATGTATTTTGTAATTGCATTGTAATTGATGTTCTGATTTAATAGTGGTTTAAACTTGTAACAATCACTTGTGTTAGCTTTTTGCAGTGTTTACCATACTGGCAGTTTGTTGAATTAAATTCCTCAGTCTCCTGG
>TCONS_00032102
TCAGGAGGGGGCACCAGTGATCGTCATATTCGCATCTGGAATGCTTCCAGTGGCTCTTGTATCAGCTCCTTGGATACTTGTTCACAGGACATGAAGCCAGGATCCTCAACTTGGCACTGAGTCCAGACGGTTCCACGCTGGCTTCAATTGCAGCTGACGAAACCATCAGACTTTGGAAGTGTTTTGAAAAGGAAAAGGATGCTGCCAAGAAACCGAAGCAGGCCAGTGGCAGGATCGTTCAACAAAGTATCCGATAAttttgaaatgctcatttttaatGCCTCCAGCAAACAGCAGTTGGATGTTTCTTTTGAACACCTCCAAATGTTCATTAGAAGCTCCCCTTTAGGTTTGGGTTTTCAAGAACTTGTTCATGTATGCTGTGCCGTCAAGCTCTACACTAGATTTTATTGGACACCTTTCTTGTTTGCGTTCTCGGAGGCGTAATGTTTTTAAAGGGATGAGCATGGCTGCTAAATGGGATTACTAGAACACCATGTCCTTTGAAAGTTAACTTTTCAGTGACTTTCATACTGACATTTTTGCATATTTAACCATCAATGATCTTTAAGTTATGTACAGTAATGTaagttttgcaaataaagtttAAGAGTAA
>TCONS_00032103
TCAGCTGCTCAGATGTTTGTTGAATTCACAAGCGGAACTACGAAAAACCTCACAAAACCTGTACATCAGAGTGTCTGATACTGAGATCTAGATACGGAGATATTTTTGCAGAACTTCGGAAAAACATTGTTGGAATTGTGAGTTACCAAAACTGCAACAGAAATGTCTCAGTTTGGGTTTGAGAACGACATTCACAACGTTCTCCGGCTAGATATGCCCATCACCAACGCCCCGATGGCGAGATGGCAGAGGAAAGCCAGCACTTCAAACTCAAGCAGCACAAACTCAATCTCGCCCAACAAGAGCGTTAACAGATCCGTGAGCCTTTCCAAAACACCCAGTAAAACACCAGGGAAAAATGGCAAGACCCAAAACACCCCCTCTAAGGCAGGAGGAGATCGGTACATCCCAACAAGAAATAACAAGCAGTTGGATGTTGCGAGTTTTCTTATTTCTAAAGAGAATGAGCCGGTGGAAGAAAGTGAGCCCTCTACTGCGCCAAATCAGAAGGCTTGGTCTATGTCACTAAATGGATATGACATTGAGGAAGCAAAGATTTTACATTTGGGAGGAAAACCGCTTTACGCACCAGAggGTTATCAGAATAATTTGAAGGTTCTGTACAGTCAGGTGCCCACACCAGTCTCTGTCAAGAAGAGCCGGTACATTTCCTCTTATCCTGAACGGATTCTAGATGCCCCTGATATTAGAAATGACTTCTACCTAAACCTTATGGATTGGGGAAGGCAGAACGTGTTGGCAGTTGGTCTGGCTAATCAAGTGTATTTGTGGGATGCTGGTGAAGGAGACATTGTGTTACTGAAGAAAATGGAGGATGATAATGAATACATCTGTTCTGTCTCGTGGAGCAAAGATGGCAATTTCTTGGCTAT

Function

symbol description
cdc20 Predicted to enable anaphase-promoting complex binding activity and ubiquitin ligase activator activity. Predicted to be involved in anaphase-promoting complex-dependent catabolic process and positive regulation of anaphase-promoting complex-dependent catabolic process. Predicted to act upstream of or within cell division and positive regulation of ubiquitin protein ligase activity. Predicted to be part of anaphase-promoting complex. Is expressed in proliferative region. Orthologous to human CDC20 (cell division cycle 20).

GO:

id name namespace
GO:1905786 positive regulation of anaphase-promoting complex-dependent catabolic process biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:1904668 positive regulation of ubiquitin protein ligase activity biological_process
GO:0005680 anaphase-promoting complex cellular_component
GO:0010997 anaphase-promoting complex binding molecular_function
GO:1990757 ubiquitin ligase activator activity molecular_function
GO:0097027 ubiquitin-protein transferase activator activity molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko05203 Viral carcinogenesis
ko05166 Human T-cell leukemia virus 1 infection
ko04121 Ubiquitin system
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-2044 Predicted to enable anaphase-promoting complex binding activity and ubiquitin ligase activator activity. Predicted to be involved in anaphase-promoting complex-dependent catabolic process and positive regulation of anaphase-promoting complex-dependent catabolic process. Predicted to act upstream of or within cell division and positive regulation of ubiquitin protein ligase activity. Predicted to be part of anaphase-promoting complex. Is expressed in proliferative region. Orthologous to human CDC20 (cell division cycle 20).

Ensembl:

ensembl_id ENSDARG00000100741

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032100 False 2201 mRNA 0.43 11 19217586 19234368
TCONS_00032101 False 2601 mRNA 0.42 10 19217586 19234469
TCONS_00032102 False 616 processed_transcript 0.42 2 19217738 19222433
TCONS_00032103 True 893 mRNA 0.44 6 19231118 19234329

Neighbor

gene id symbol gene type direction distance location
XLOC_016278 NA coding downstream 36017 19152372 ~ 19181569 (-)
XLOC_016277 kncn coding downstream 89201 19119847 ~ 19128385 (-)
XLOC_016276 NA coding downstream 108282 19100422 ~ 19109304 (-)
XLOC_016275 pbx1a coding downstream 386792 18698388 ~ 18830794 (-)
XLOC_016274 ptprfb coding downstream 1270197 17578320 ~ 17947389 (-)
XLOC_016280 BX511079.1 coding upstream 17801 19252270 ~ 19269297 (-)
XLOC_016281 zfyve9a coding upstream 46360 19280829 ~ 19354622 (-)
XLOC_016282 BX511079.2 coding upstream 128329 19362798 ~ 19363161 (-)
XLOC_016283 NA coding upstream 144642 19379111 ~ 19382322 (-)
XLOC_016284 BX664750.1 coding upstream 271842 19506311 ~ 19513296 (-)
XLOC_016269 BX640595.1 non-coding downstream 2273195 16944272 ~ 16944391 (-)
XLOC_016267 CU929319.1 non-coding downstream 2601531 16615940 ~ 16616055 (-)
XLOC_016265 CR377211.2 non-coding downstream 2698206 16512861 ~ 16519380 (-)
XLOC_016286 BX664750.5 non-coding upstream 289117 19523586 ~ 19523683 (-)

Expression


Co-expression Network