XLOC_016280 (BX511079.1)


Basic Information

Item Value
gene id XLOC_016280
gene name BX511079.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19252270 ~ 19269297 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032104
CTTCTCCAGTTTGATCTGGGCACTTCCTACCGGCTTATCACTCCTCAGAAATCCGCTGTCATGAGACGAAGAGGAGCGGCCTCCGCAGAGACGGGACTGATCTCGACAGCACTATCACACTCTTCCTGCTCATCAGGGGACACTGCAGGGGCTGGGGGCCGACTGGATCCAACGGGACCCCCACATGCCACTGGAGGAGGAATCTCAGATTCGTCAATCTTCCCTCCTTTCCGTACTGTCGCCAGCATAGTCTGTAGTGTCTAAACAAGAATATTAGAGTTTTAGTTGTTATAGATTATAATATGAACCACATTATTTTGTGCTATACAGTGTTTGTTTGTTAAGATGTGACACTGTATGAGCTCACTTTGAGGCCTCTCTCATATCGCCGGGCTTTAGAAGTTTCCCCTGCAGCTTTGGCATTGGTAACAGCCATCCTATACAAGCTTATTCTTTCCTCTAAGGTGTGTTCGATGCTCCCGGGAACTGATGAAACCTTAGTTTCCTATGAGAGAAACAGAAATCATACATGACATGTGATTTCTTATAAAAAGCTTGGGATGGccgattaatttaaattaaattgcaagcatgattaaaggtcccatgaaattaaaataaaacattttaaaaatgta

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007498 mesoderm development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0003401 axis elongation biological_process
GO:0009888 tissue development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060026 convergent extension biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098575

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032104 True 638 lncRNA 0.44 2 19252270 19269297

Neighbor

gene id symbol gene type direction distance location
XLOC_016279 cdc20 coding downstream 17801 19217586 ~ 19234469 (-)
XLOC_016278 NA coding downstream 70701 19152372 ~ 19181569 (-)
XLOC_016277 kncn coding downstream 123885 19119847 ~ 19128385 (-)
XLOC_016276 NA coding downstream 142966 19100422 ~ 19109304 (-)
XLOC_016275 pbx1a coding downstream 421476 18698388 ~ 18830794 (-)
XLOC_016281 zfyve9a coding upstream 11532 19280829 ~ 19354622 (-)
XLOC_016282 BX511079.2 coding upstream 93501 19362798 ~ 19363161 (-)
XLOC_016283 NA coding upstream 109814 19379111 ~ 19382322 (-)
XLOC_016284 BX664750.1 coding upstream 237014 19506311 ~ 19513296 (-)
XLOC_016285 pimr52 coding upstream 249223 19518520 ~ 19520690 (-)
XLOC_016269 BX640595.1 non-coding downstream 2307879 16944272 ~ 16944391 (-)
XLOC_016267 CU929319.1 non-coding downstream 2636215 16615940 ~ 16616055 (-)
XLOC_016265 CR377211.2 non-coding downstream 2732890 16512861 ~ 16519380 (-)
XLOC_016286 BX664750.5 non-coding upstream 254289 19523586 ~ 19523683 (-)
XLOC_016287 BX664750.2 non-coding upstream 270383 19539680 ~ 19559171 (-)

Expression


Co-expression Network