XLOC_016281 (zfyve9a)


Basic Information

Item Value
gene id XLOC_016281
gene name zfyve9a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19280829 ~ 19354622 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032105
GCACGGCGGTGTCACCCACTGAGAAAGGCTTACCGCACAAGGTTACGAAACAGACGCCATCTTGGCTCAACGGAAAGTCTCACGCGTTGGAATTTCACGTCATCTCAGCGTAGCTTGAGCCAACATGTCCCACCCTTGCTGCAGTTCGTAGTAACCTTCTCCATGAAAGCTTTGGGGGAGGGATAAACGAGAGCTGTCGCACAAACTACTTCTTCATCCACTTCTCTGGAATACTGGAAAATGGCCTAGTTGTACCTGGAGAGATCCTGCAGATGTCAAATACATTAGCGTTTGcttatgtgagtgtgtatgttggATTTACCCTGGGGTTTCATGGCTGAATCGTGcatgaagaagatgatgatgatgattatgggGATTCCACTGGTTTGGGTTTCAAATGTGTGTGAGACTGGATGAAACAAGGCCTCTATTAGGAGCCTTTGTGCAGATATACCAACAAATACTCGAGGACCTCTGGGCAGGTTCACACGACGCTTGGCAGGGTGGAGTTTCATGACCCATGGAGAATTACTTCCAGGCTGAGGCCTTTAACCTGGATAAGGTGCTGGATGAGTTTGAACAGAACGAAGATGAAACGGACACACCAATTCTCTCGGATGCCAAGTGGACTCAGATTCTGGCCCCTCCATCACACCTCCTTTCCCTGAATCCGGCACTAACCCACTCTGACCTCAGCCCAAGGGACAGCCCTATCAGCTTCAAGCCCCTTCTGGACACCCAGACATCAGATGGGCCCTCTTTGGTTGAGGTCACCAGGTTAAATGGGAAACAGGGACTGGGACAACAGCAAGAGGGCAAGAGTGAAGAACGGCCAGCAGATGTTTACAGTCCACCTCTGCCTCAGCCAAACATTGGCAAGCTAGTGAGCACTGACGGGCAGTTGGCAGACTTACCGTCCTTCAACAGTGGGGTGTTGGAAAATGGTTATCCAGCCAGTCCTGATCATACCGTCCAGTCTGATATCATTAGATTCAATGATGATGAGACAAATCAACCAGTCATAGACAAGAAGTGTCTCAAGGACACAGGTCCCTGTGAGCTTAAATTGGAGCAGAATGGTCATATAAGTGATGCTGGTCGAGATTTTATCTCTACAGAGGAAGAATCTGAGGATAAGCCATCGATTTTGAAGAATGGTGTTAAAATGGAGACAAGTAAGGATGAAAGTGTTTCACCCTCTTGTAAGGTCGGAATAAGGGACAACAGTAATGGATTATGTCCAGAAGGAAGTTCTTCCCATAAAGGAGTATTGCACAAATCTGTAAATGGTGGCGGAGAATTGGATTGTGGGAGGGAGAATGATGAGGGTGCCTTTCAAAATGGTGTAATGGTTGAAAATGAAAATACAGAAAAAGACAACTCTGCATCAAATcaggaagagaaagagaaaatgcTAAAGACTGACCACAAGGGAATGCATAAGGAATCATTAGAGGGAGAGAGATGCCTGTCTGATGGTCTTGTAGAGGACCTTGATGGAGATGCACAGAATCAGCTGGCAGTTTCTTCAAAAGAGGACTCTGTGACAGAGGAAAAAGAAATAGAGGAGAGCAAGCAAGAGACTTGTGATCCAGTTCGACAACTGGAATCCGGCAGAACAGGCAAACTTAACAACAGTCGGCTGCAGCCTGTCAGCATTCCCTATGGTGGGGCCCGTCCAAAACAGCCTGTCAATCTAAAGCTGCAGATTCCCCAGCCTCTCTCCAACCAAGTCCAGAACGAATTTGGCACAAACAGCAAAAACAAGAACATGGAGCCTCAAAGTAGAACAGGAGGCCTTGACGCATCTTCTGAAGCTACTGAGTCTGGAGTTGTTCAGATAAATGGAGAGCATGGAAATGGTTCTTCAGGCTTAATCATCCCATCTGAGAGTCCAGACAATGACCTTCAAGCAGGCCAGCAAGGAGCTTTTTCTAAGAAGCCCTTGAGCTCCTTGGGGGAAGTGGCTCCAGTTTGGGTTCCTGACTCTCAAGCACCCATTTGCATGAAGTGCGAGGTCAAGTTCACTTTTACTAAAAGAAGGCACCATTGTCGGGCTTGTGGCAAGGTGTTCTGTGCTGCTTGTTGTAGTCTGAAAAGCAGGCTGATGTACATGGACAGGAAAGAAGCGAGGGTTTGTGTTACCTGCCACTGTGCATTAATAAATGCTCAAACATGGGAAAATACAGGAAGTGGTTGTAACCAGAGCCCAAATCCCAACAACCCGGCAGAATACTGCTCCACTATCCCTCCTCTGCAGCAGGCGCAGGCTTCAGGAGCACTTAGCTCCCCACCACCAACCGTCATGGTGCCTGTCGGTGTCCTCAAACAACCAGGGTCTGAAGGTTCTCTTCCTCGAGAGCAAAGGAGAGTTTGGTTTGCGGATGGCATTCTGCCCAATGGGGAAGCTACAGACTCTTCTAAAGCCCCTGCGGCAAACCCCAACCCCTCACAGCCTGTGGCTACATCCCAAAACTCAAACAAATCCTCAGGAGCCAATGCCTCTGAGGCAGTCCATGGCAGTGGAGCCCTGACTACTAGTCCAGTGGGCAGCTCTTTCAGTCTGATCCCAGAGGACGGACTTCCTCCCATCCTCATCTCCACAGGCGTCAAAGGAGGTACGGGAGGCCACATCACAGaCTACGCTGTTGAGGAAAGACCTTCTGAGATTGCGCTGATGCAGCAGCTTGAGGAGGGCTGTCCTGATCCTTTGGTTTTTGTCCTCAATGCCAACCTCTTGGCTATGGTCAAACTGGTTAATTATGTAAATAGGAAGTGCTGGTATATGACAACAAAGGGCATGCATGCCGTGGGCCAGGCTGAGGTTGTAGTGCTCCTGCAGTGCCTCCCTGATGAGAAAACCATTCCTAAGGACATCTTCACCCACTTCGTCCAGCTGTACCGGGAGGCTCTTGCAGGAAATGTGTTAGGTCACCTGGGCCACTCATTCTTCACACAAAGCTTCCTGGGCAGCAAGGAACATGGCGGCTTCCTTTACGTCAATCCAACCTTTCAGACCCTGCAGGACCTGCCGTTGCCGAACTCGCCCTACCTCTTTGGCATCCTGGTGCAGAAGTGGGAGACCCCCTGGGCTAAGGTCTTTCCCATTCGACTCATGCTCCGCCTTGGGGCAGAATACAGATTTTACCCCTGCCCGCTGTTTAGTGTTCGCTTCAGAAAACCCCTGTTTGGAGAAACCGGTCATACAATCATGAACTTACTGGCAGACTTCCGAAATTATCAGTACACGTTACCGGTGGTGAAGGGGCTGGTGGTGGACATGGAAGTGAGGAAGACGTGCATCAAGATTCCGAGCAATCGCTACAATGAGcttaTGAAGGCAATGAATAAATCCAACGAGCATGTGCTGGCAATGGGTGCATGCTTCAACGATAGGGCAGATTCTCATCTCGTCTGCGTTCAGAATGATGATGGTAACTACCAGACGCAGGCCATTAGTATTCATCACCAGCCTCGCAAAGTGACCGGTGCCTCATTCTTTGTCTTTAGCGGGGCTTTGAAAGCTTCATCGGGCTACTTGGCAAAGACAAGCATTGTTGAAGATGGTGTAATGGTGCAGATTACAGCTGAAACCATGGAGGCCTTAAGACAAGCTTTGAGAGAGATGAAAGATTTTAGTATCGCCTGTGGAAAAGCTGATCAGGAGGAGAACCAGGAACACGTTCAGGTTCAGTGGGTCGACGATGATCATAACGTCAATAAGGGAGTGATCAGCCCCATTGATGGGAAATCCATGGAGTCAGTCACCAGCGTTAAGATCTTTCATGGCTCTGAGTATAAAGCTAATGGAAAAGTCATTAAATGGACAGAGgtGTTTTTCCTGCGGAGCGAGGACCAGAACAATGGCCTGAGTGATCCTGCAGACCACAGCCGGCTCGCTGAGAACGTGGCAAGGGCTTTCTGCATGGCTCTGTGCCCTCACCTCAAGCTGCTCAAAGAAGATGGCATGGCCAAACTGGGCTTGCGGGTCACACTGGACTCAGATCAGGTGGGCTATCTTGCAGGCAGTAACGGTCAGCCGTTGCTCCCCCAGTATCTGAGCGAGCTGGACAGCGCCCTCATCCCAGTCATACACAGTGGAGCCTGCCAGCTGAGTGAGGGCCCTGTGGTGATGGAGCTCATCTTCTACATTCTGGAGATCATCTCTTAAAAGAGGAAACCCCTGTCCAGTCTTAGACTCGCACCTCCCACCAGCTCAAGACCTTATTCAGTCGCTCCTTTTCTCTCTCATTTGCACTTCAAAGAGCCTGAAAGCTGTGCAAGAACAAGTCCTCCTTATCACCTATGCACCATTTCCACCGGGACGTCCTCTGCTGAACGCGGTGCTCCCTTTGGTTTCTCCTCACCTCTCAACTCCACTGTGGAAACCATAAGGCCCTGTTGAGTCTAAAGGGGTGGTCGTTCTGAAATTGTTCGCTTCGGAAGCATTGTAGCAACACTATGCTGAAACACAAGAGGGCGAGAGGGAGGGAGAATCTCCAATGACACTGTTGTGCAAGAAGAGTAGGTTAGTGCTATGAAATGGTTTGTGGTCCAGTGCCTGGGCCGTCGTGAAGAAATGAAAGACGAGATTGAGTCTTGCCTCTAAGCTTTATGAATCACCAGATGCTTTATTTCATGAATATGGACCTTGTTTTTTATTGGTTAACGAAAAACTGCTCCAAAGCTAAAATGATGTAGCTTCTTCAAAGTTGGACTGCTTGGCTTAGGAAAGTTGATGATGATAATCTCAAGAATGGACCTCTgttacttattaatattattacaagaCAATATGATCCAACTACAATTTCAAGCGGCCTTCATGAATGAAACTACAGCGTCAAGTTCTACATAATGGTAGGTTTTGAGGATCTCAGTCCGATAGAGATTTGATTGGTTTGGATTGGGATGGTGGATGATATGTTACCATTTCCTTTGGGCCGCTGCATTTCGCATCCCGTCCCATCTGTTGACCTATTTAGCAGCccatgtttataaatatatatatatattttctgccaGTGTTTTTAACATGCTATCATATATAGGATTGTGTAAGGAATAGCAATGCAGCGCACAGGATATTAAGCCATCATTAAGAAATGTAAAGTGGGAATAAAGAATGGAATAAC
>TCONS_00032106
GTTTGGGTTTCAAATGTGTGTGAGACTGGATGAAACAAGGCCTCTATTAGGAGCCTTTGTGCAGATATACCAACAAATACTCGAGGACCTCTGGGCAGGTTCACACGACGCTTGGCAGGGTGGAGTTTCATGACCCATGGAGAATTACTTCCAGGCTGAGGCCTTTAACCTGGATAAGGTGCTGGATGAGTTTGAACAGAACGAAGATGAAACGGACACACCAATTCTCTCGGATGCCAAGTGGACTCAGATTCTGGCCCCTCCATCACACCTCCTTTCCCTGAATCCGGCACTAACCCACTCTGACCTCAGCCCAAGGGACAGCCCTATCAGCTTCAAGCCCCTTCTGGACACCCAGACATCAGATGGGCCCTCTTTGGTTGAGGTCACCAGGTTAAATGGGAAACAGGGACTGGGACAACAGCAAGAGGGCAAGAGTGAAGAACGGCCAGCAGATGTTTACAGTCCACCTCTGCCTCAGCCAAACATTGGCAAGCTAGTGAGCACTGACGGGCAGTTGGCAGACTTACCGTCCTTCAACAGTGGGGTGTTGGAAAATGGTTATCCAGCCAGTCCTGATCATACCGTCCAGTCTGATATCATTAGATTCAATGATGATGAGACAAATCAACCAGTCATAGACAAGAAGTGTCTCAAGGACACAGGTCCCTGTGAGCTTAAATTGGAGCAGAATGGTCATATAAGTGATGCTGGTCGAGATTTTATCTCTACAGAGGAAGAATCTGAGGATAAGCCATCGATTTTGAAGAATGGTGTTAAAATGGAGACAAGTAAGGATGAAAGTGTTTCACCCTCTTGTAAGGTCGGAATAAGGGACAACAGTAATGGATTATGTCCAGAAGGAAGTTCTTCCCATAAAGGAGTATTGCACAAATCTGTAAATGGTGGCGGAGAATTGGATTGTGGGAGGGAGAATGATGAGGGTGCCTTTCAAAATGGTGTAATGGTTGAAAATGAAAATACAGAAAAAGACAACTCTGCATCAAATcaggaagagaaagagaaaatgcTAAAGACTGACCACAAGGGAATGCATAAGGAATCATTAGAGGGAGAGAGATGCCTGTCTGATGGTCTTGTAGAGGACCTTGATGGAGATGCACAGAATCAGCTGGCAGTTTCTTCAAAAGAGGACTCTGTGACAGAGGAAAAAGAAATAGAGGAGAGCAAGCAAGAGACTTGTGATCCAGTTCGACAACTGGAATCCGGCAGAACAGGCAAACTTAACAACAGTCGGCTGCAGCCTGTCAGCATTCCCTATGGTGGGGCCCGTCCAAAACAGCCTGTCAATCTAAAGCTGCAGATTCCCCAGCCTCTCTCCAACCAAGTCCAGAACGAATTTGGCACAAACAGCAAAAACAAGAACATGGAGCCTCAAAGTAGAACAGGAGGCCTTGACGCATCTTCTGAAGCTACTGAGTCTGGAGTTGTTCAGATAAATGGAGAGCATGGAAATGGTTCTTCAGGCTTAATCATCCCATCTGAGAGTCCAGACAATGACCTTCAAGCAGGCCAGCAAGGAGCTTTTTCTAAGAAGCCCTTGAGCTCCTTGGGGGAAGTGGCTCCAGTTTGGGTTCCTGACTCTCAAGCACCCATTTGCATGAAGTGCGAGGTCAAGTTCACTTTTACTAAAAGAAGGCACCATTGTCGGGCTTGTGGCAAGGTGTTCTGTGCTGCTTGTTGTAGTCTGAAAAGCAGGCTGATGTACATGGACAGGAAAGAAGCGAGGGTTTGTGTTACCTGCCACTGTGCATTAATAAATGCTCAAACATGGGAAAATACAGGAAGTGGTTGTAACCAGAGCCCAAATCCCAACAACCCGGCAGAATACTGCTCCACTATCCCTCCTCTGCAGCAGGCGCAGGCTTCAGGAGCACTTAGCTCCCCACCACCAACCGTCATGGTGCCTGTCGGTGTCCTCAAACAACCAGGGTCTGAAGGTTCTCTTCCTCGAGAGCAAAGGAGAGTTTGGTTTGCGGATGGCATTCTGCCCAATGGGGAAGCTACAGACTCTTCTAAAGCCCCTGCGGCAAACCCCAACCCCTCACAGCCTGTGGCTACATCCCAAAACTCAAACAAATCCTCAGGAGCCAATGCCTCTGAGGCAGTCCATGGCAGTGGAGCCCTGACTACTAGTCCAGTGGGCAGCTCTTTCAGTCTGATCCCAGAGGACGGACTTCCTCCCATCCTCATCTCCACAGGCGTCAAAGGAGGTACGGGAGGCCACATCACAGaCTACGCTGTTGAGGAAAGACCTTCTGAGATTGCGCTGATGCAGCAGCTTGAGGAGGGCTGTCCTGATCCTTTGGTTTTTGTCCTCAATGCCAACCTCTTGGCTATGGTCAAACTGGTTAATTATGTAAATAGGAAGTGCTGGTATATGACAACAAAGGGCATGCATGCCGTGGGCCAGGCTGAGGTTGTAGTGCTCCTGCAGTGCCTCCCTGATGAGAAAACCATTCCTAAGGACATCTTCACCCACTTCGTCCAGCTGTACCGGGAGGCTCTTGCAGGAAATGTGTTAGGTCACCTGGGCCACTCATTCTTCACACAAAGCTTCCTGGGCAGCAAGGAACATGGCGGCTTCCTTTACGTCAATCCAACCTTTCAGACCCTGCAGGACCTGCCGTTGCCGAACTCGCCCTACCTCTTTGGCATCCTGGTGCAGAAGTGGGAGACCCCCTGGGCTAAGGTCTTTCCCATTCGACTCATGCTCCGCCTTGGGGCAGAATACAGATTTTACCCCTGCCCGCTGTTTAGTGTTCGCTTCAGAAAACCCCTGTTTGGAGAAACCGGTCATACAATCATGAACTTACTGGCAGACTTCCGAAATTATCAGTACACGTTACCGGTGGTGAAGGGGCTGGTGGTGGACATGGAAGTGAGGAAGACGTGCATCAAGATTCCGAGCAATCGCTACAATGAGcttaTGAAGGCAATGAATAAATCCAACGAGCATGTGCTGGCAATGGGTGCATGCTTCAACGATAGGGCAGATTCTCATCTCGTCTGCGTTCAGAATGATGATGGTAACTACCAGACGCAGGCCATTAGTATTCATCACCAGCCTCGCAAAGTGACCGGTGCCTCATTCTTTGTCTTTAGCGGGGCTTTGAAAGCTTCATCGGGCTACTTGGCAAAGACAAGCATTGTTGAAGATGGTGTAATGGTGCAGATTACAGCTGAAACCATGGAGGCCTTAAGACAAGCTTTGAGAGAGATGAAAGATTTTAGTATCGCCTGTGGAAAAGCTGATCAGGAGGAGAACCAGGAACACGTTCAGGTTCAGTGGGTCGACGATGATCATAACGTCAATAAGGGAGTGATCAGCCCCATTGATGGGAAATCCATGGAGTCAGTCACCAGCGTTAAGATCTTTCATGGCTCTGAGTATAAAGCTAATGGAAAAGTCATTAAATGGACAGAGgtGTTTTTCCTGCGGAGCGAGGACCAGAACAATGGCCTGAGTGATCCTGCAGACCACAGCCGGCTCGCTGAGAACGTGGCAAGGGCTTTCTGCATGGCTCTGTGCCCTCACCTCAAGCTGCTCAAAGAAGATGGCATGGCCAAACTGGGCTTGCGGGTCACACTGGACTCAGATCAGGTGGGCTATCTTGCAGGCAGTAACGGTCAGCCGTTGCTCCCCCAGTATCTGAGCGAGCTGGACAGCGCCCTCATCCCAGTCATACACAGTGGAGCCTGCCAGCTGAGTGAGGGCCCTGTGGTGATGGAGCTCATCTTCTACATTCTGGAGATCATCTCTTAA

Function

symbol description
zfyve9a Predicted to enable metal ion binding activity. Acts upstream of or within generation of neurons and hepatocyte proliferation. Located in endosome. Is expressed in brain and liver. Orthologous to human ZFYVE9 (zinc finger FYVE-type containing 9).

GO:

id name namespace
GO:0001889 liver development biological_process
GO:0072574 hepatocyte proliferation biological_process
GO:0048699 generation of neurons biological_process
GO:0005768 endosome cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-182 Predicted to enable metal ion binding activity. Acts upstream of or within generation of neurons and hepatocyte proliferation. Located in endosome. Is expressed in brain and liver. Orthologous to human ZFYVE9 (zinc finger FYVE-type containing 9).

Ensembl:

ensembl_id ENSDARG00000101903

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032105 False 5138 mRNA 0.48 19 19280829 19354622
TCONS_00032106 True 3787 mRNA 0.50 18 19281793 19321927

Neighbor

gene id symbol gene type direction distance location
XLOC_016280 BX511079.1 coding downstream 11532 19252270 ~ 19269297 (-)
XLOC_016279 cdc20 coding downstream 46360 19217586 ~ 19234469 (-)
XLOC_016278 NA coding downstream 99260 19152372 ~ 19181569 (-)
XLOC_016277 kncn coding downstream 152444 19119847 ~ 19128385 (-)
XLOC_016276 NA coding downstream 171525 19100422 ~ 19109304 (-)
XLOC_016282 BX511079.2 coding upstream 8176 19362798 ~ 19363161 (-)
XLOC_016283 NA coding upstream 24489 19379111 ~ 19382322 (-)
XLOC_016284 BX664750.1 coding upstream 151689 19506311 ~ 19513296 (-)
XLOC_016285 pimr52 coding upstream 163898 19518520 ~ 19520690 (-)
XLOC_016286 BX664750.5 coding upstream 168964 19523586 ~ 19523683 (-)
XLOC_016269 BX640595.1 non-coding downstream 2336438 16944272 ~ 16944391 (-)
XLOC_016267 CU929319.1 non-coding downstream 2664774 16615940 ~ 16616055 (-)
XLOC_016287 BX664750.2 non-coding upstream 185058 19539680 ~ 19559171 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00004961 LOC107553256,LOC107677579,LOC107732202 coding CM030140.1 CM030140.1 11217636 ~ 11243426 (-)