XLOC_016598 (tradv23.1.2)


Basic Information

Item Value
gene id XLOC_016598
gene name tradv23.1.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36266386 ~ 36266896 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032624
ATGGAGGGATGCTTTCTATTGATTCTCATATCAGCATCAGGTGTTTTGTCTGACAGCATTCAACCAACAGACAAGAAAACTAATACTGACACAAAAGAAGAAGAGCATGTAACACTGAGCTGCTCATATGATACAAGGAGCGAGTATGTCTATCTCTACTGGTACAGACAATATCCTAATAGAGAACCAGAATATTTACTGCGTAAAGGTGCCCGTTCGTGGAGCAGTTACAATAATATGCCAGATCCTCAGTTTCAGGCGACTTCATCCCAAACCTCCACTGAACTCACTATTACTGCTGTAACTCTGTCAGATTCAGCTCTCTATTATTGTGCTCTAAGAGTTG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-170601-166 No description available

Ensembl:

ensembl_id ENSDARG00000100237

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032624 True 346 TR_V_gene 0.41 2 36266386 36266896

Neighbor

gene id symbol gene type direction distance location
XLOC_016597 tradv23.1.1 coding downstream 1530 36264323 ~ 36264856 (-)
XLOC_016596 tradv22.0 coding downstream 2713 36263197 ~ 36263673 (-)
XLOC_016595 tradv21.0 coding downstream 4726 36261170 ~ 36261660 (-)
XLOC_016594 tradv20.0 coding downstream 6111 36259718 ~ 36260275 (-)
XLOC_016593 tradv19.0 coding downstream 6774 36258891 ~ 36259612 (-)
XLOC_016599 tradv24.0.1 coding upstream 2911 36269807 ~ 36270280 (-)
XLOC_016600 tradv23.1.3 coding upstream 6266 36273162 ~ 36273643 (-)
XLOC_016601 tradv24.0.2 coding upstream 10089 36276985 ~ 36277780 (-)
XLOC_016602 tradv25.0.1 coding upstream 12084 36278980 ~ 36279485 (-)
XLOC_016603 tradv26.0 coding upstream 26000 36292896 ~ 36293427 (-)
XLOC_016555 NA non-coding downstream 187748 36076196 ~ 36078638 (-)
XLOC_016553 NA non-coding downstream 532634 35728589 ~ 35733752 (-)
XLOC_016552 NA non-coding downstream 644519 35615395 ~ 35621867 (-)
XLOC_016546 NA non-coding downstream 2158401 34106830 ~ 34107985 (-)
XLOC_016543 NA non-coding downstream 2339607 33843402 ~ 33926779 (-)
XLOC_016619 NA non-coding upstream 112343 36379239 ~ 36425603 (-)
XLOC_016633 NA non-coding upstream 480282 36747178 ~ 36826293 (-)
XLOC_016635 NA non-coding upstream 619847 36886743 ~ 36905394 (-)
XLOC_016638 NA non-coding upstream 665803 36932699 ~ 36933692 (-)
XLOC_016643 NA non-coding upstream 869772 37136668 ~ 37140483 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01137540_00000259_00000841 NA coding CI01137540 null 259 ~ 993 (+)
eurasian perch (Perca fluviatilis) trnah-gug_9 NA coding NC_053116.1 CM020913.1 20321511 ~ 20321582 (+)
tiger barb (Puntius tetrazona) LOC122327104 NA misc NC_056700.1 CM032069.1 16888497 ~ 16888985 (-)