XLOC_016601 (tradv24.0.2)


Basic Information

Item Value
gene id XLOC_016601
gene name tradv24.0.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36276985 ~ 36277780 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032627
ATGTCAAGTTATGTCCAGAAACCGTGCATGCTGAAAGGTAACCGTGCTAAAGATGCGATCACTCCATATAGGGATGCAGTTTTTGCcagtgagagtgagagagtgaaacTCTCCTGTAACTACACTGGTTCTGTTGATAGTCTTCACTGGTATCGACAGTATCCCGGTTCACGACCACACTTCCTCATACTGGATTACTCTGGATTTGTTACTCATGCTAATCCTCCATTTGATGGAATCTCCATTAAACACAGAAAAGAAAACAGCAGTGTGGATCTGCTGATCTCCTCTGCTGCAGTGTCAGACTctgctgtgtattactgtgcTCTGAGGCCCACAGTGACAGGAAAACACTTCACATCATACAAAAATCTAAAAGATACTCACATTTCTAGTATTGTGAAGGAATATAT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-67 No description available

Ensembl:

ensembl_id ENSDARG00000098394

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032627 True 413 TR_V_gene 0.42 2 36276985 36277780

Neighbor

gene id symbol gene type direction distance location
XLOC_016600 tradv23.1.3 coding downstream 3342 36273162 ~ 36273643 (-)
XLOC_016599 tradv24.0.1 coding downstream 6705 36269807 ~ 36270280 (-)
XLOC_016598 tradv23.1.2 coding downstream 10089 36266386 ~ 36266896 (-)
XLOC_016597 tradv23.1.1 coding downstream 12129 36264323 ~ 36264856 (-)
XLOC_016596 tradv22.0 coding downstream 13312 36263197 ~ 36263673 (-)
XLOC_016602 tradv25.0.1 coding upstream 1200 36278980 ~ 36279485 (-)
XLOC_016603 tradv26.0 coding upstream 15116 36292896 ~ 36293427 (-)
XLOC_016604 tradv24.0.3 coding upstream 16040 36293820 ~ 36294338 (-)
XLOC_016605 tradv25.0.2 coding upstream 19521 36297301 ~ 36297784 (-)
XLOC_016606 tradv23.0.1 coding upstream 24499 36302279 ~ 36302732 (-)
XLOC_016555 NA non-coding downstream 198347 36076196 ~ 36078638 (-)
XLOC_016553 NA non-coding downstream 543233 35728589 ~ 35733752 (-)
XLOC_016552 NA non-coding downstream 655118 35615395 ~ 35621867 (-)
XLOC_016546 NA non-coding downstream 2169000 34106830 ~ 34107985 (-)
XLOC_016543 NA non-coding downstream 2350206 33843402 ~ 33926779 (-)
XLOC_016619 NA non-coding upstream 101459 36379239 ~ 36425603 (-)
XLOC_016633 NA non-coding upstream 469398 36747178 ~ 36826293 (-)
XLOC_016635 NA non-coding upstream 608963 36886743 ~ 36905394 (-)
XLOC_016638 NA non-coding upstream 654919 36932699 ~ 36933692 (-)
XLOC_016643 NA non-coding upstream 858888 37136668 ~ 37140483 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G731383 NA non-coding NC_048572.1 CM023226.2 61344610 ~ 61380805 (-)
eurasian perch (Perca fluviatilis) LOC120567875 NA misc NC_053122.1 CM020919.1 1560679 ~ 1561168 (+)
eurasian perch (Perca fluviatilis) trnac-gca_13 NA misc NC_053115.1 CM020912.1 35926423 ~ 35926494 (-)
tiger barb (Puntius tetrazona) LOC122356645 LOC107709317 coding NC_056700.1 CM032069.1 16847691 ~ 16849363 (-)
tiger barb (Puntius tetrazona) trnas-uga_35 NA coding NC_056702.1 CM032071.1 25999503 ~ 25999584 (-)
mexican tetra (Astyanax mexicanus) LOC111188983 NA misc NW_019171803.1 APWO02001401.1 35576 ~ 36291 (+)