XLOC_016604 (tradv24.0.3)


Basic Information

Item Value
gene id XLOC_016604
gene name tradv24.0.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36293820 ~ 36294338 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032630
ATGTTCATCTACATTGTAATACTGATGTATAATGCAGGTTCCAGAGCCTCGGAAGTCATCACTCCTAAAACTGACAGAGAGTTTGCTGTTGAAGGTGACAATGTGACTCTCTCTTGTAACTACAGTGGATCAGTTCGTAGTGTTCACTGGTATCGCAAATATTCAGGTTCACCTCCACAGTTCCTCATACTGGAGTATTCAGGAGTTATTACTCCAGCGGATCCACCAGTTCCAGGAATCTCCATCAATCACAGAAAAAAGCAAAGCCATGTGGATCTGCTGCTCTCCTCTGCTGCAGTATCAGACTctgctgtgtattactgtgcTCTGCAGCCCACAGTGACAGGAAATTCAAGAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-49 No description available

Ensembl:

ensembl_id ENSDARG00000100345

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032630 True 358 TR_V_gene 0.44 2 36293820 36294338

Neighbor

gene id symbol gene type direction distance location
XLOC_016603 tradv26.0 coding downstream 393 36292896 ~ 36293427 (-)
XLOC_016602 tradv25.0.1 coding downstream 14335 36278980 ~ 36279485 (-)
XLOC_016601 tradv24.0.2 coding downstream 16040 36276985 ~ 36277780 (-)
XLOC_016600 tradv23.1.3 coding downstream 20177 36273162 ~ 36273643 (-)
XLOC_016599 tradv24.0.1 coding downstream 23540 36269807 ~ 36270280 (-)
XLOC_016605 tradv25.0.2 coding upstream 2963 36297301 ~ 36297784 (-)
XLOC_016606 tradv23.0.1 coding upstream 7941 36302279 ~ 36302732 (-)
XLOC_016607 tradv24.0.4 coding upstream 9055 36303393 ~ 36303842 (-)
XLOC_016608 tradv25.0.3 coding upstream 10265 36304603 ~ 36305064 (-)
XLOC_016609 tradv24.0.5 coding upstream 11848 36306186 ~ 36306656 (-)
XLOC_016555 NA non-coding downstream 215182 36076196 ~ 36078638 (-)
XLOC_016553 NA non-coding downstream 560068 35728589 ~ 35733752 (-)
XLOC_016552 NA non-coding downstream 671953 35615395 ~ 35621867 (-)
XLOC_016546 NA non-coding downstream 2185835 34106830 ~ 34107985 (-)
XLOC_016543 NA non-coding downstream 2367041 33843402 ~ 33926779 (-)
XLOC_016619 NA non-coding upstream 84901 36379239 ~ 36425603 (-)
XLOC_016633 NA non-coding upstream 452840 36747178 ~ 36826293 (-)
XLOC_016635 NA non-coding upstream 592405 36886743 ~ 36905394 (-)
XLOC_016638 NA non-coding upstream 638361 36932699 ~ 36933692 (-)
XLOC_016643 NA non-coding upstream 842330 37136668 ~ 37140483 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000633_00010997_00014547 NA coding CI01000633 null 10441 ~ 14581 (+)
eurasian perch (Perca fluviatilis) trnae-cuc_14 NA misc NC_053116.1 CM020913.1 12223567 ~ 12223638 (+)
striped catfish (Pangasianodon hypophthalmus) LOC117596944 NA non-coding NC_047598.1 CM018544.1 32880711 ~ 32881365 (+)
tiger barb (Puntius tetrazona) LOC122327088 NA misc NC_056700.1 CM032069.1 16870225 ~ 16870796 (-)