XLOC_016945 (napgb)


Basic Information

Item Value
gene id XLOC_016945
gene name napgb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 54364273 ~ 54387550 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033100
ATGGCGGCCCAGAAGATCAACGAGGCGCACGACCACATCACCAAAGCAGAGAAATGCTTGAAGACCAGCATGACCAAGTGGAAACCCGATTACGACGGAGCCGCTTCAGAGATGGCCAAAGCAGCTGTGGCTTTCAAAAACGCAAAACAGTTTGAACAAGCGAAGGATGCGTACTTGAAGGAGGCCGAGTATCACACTGAAAACAAAGCACTCTTCCATGCAGCAAAAGCGTATGAACAAGCTGGTATGATGCTGAAGGACATGAAGAAAATGCCCGAAGCCATTCAGCTGATAGAGAAGGCCAGCATCATGTATGTGGAGAACGGCACGTCTGGCACTGCTGGAATGGCACTGGACAGAGCTGGAAAACTCATCGAGCCGATTGATCTAGAGAAAGCCGTGGACTTGTACCAGAAGGCCGCATCTGTGTTTGAGAATGAAGATCGTCTCAGACAGGCTGCAGAGCTGCTTGGTAAATCCTCCAGACTGCTGGTCAGACTGCGCAGGCTGGACGAGGCTGCTGTGGCTCTTCAGAAAGAGAAGAACATGTACAAGGAGATTGAGAACTACCCCACATGCTTTAAGAAAACCATCGCTCAGGGCTAGTTCATCTGCACCGAGGAGACTTTGTGGCTGCAGacaagtgtgtgagagagagttacagTCTCCCAGGGTTCAGTGGGAGTGAGGACTGCGTGTCGATGGAGACTCTGCTGGCAGCGTTTGATGAGCAGGATGAGGATGGGGTGTCGCGGGTCTGCAACTCACCACTGCTCAAGTACATGGACAACGACtatGCAAAGCTGGCCATCTCTCTAAAGGTGCCAGGCGGCGGTGGAGGAAAGAAGAAGAAATCTCCTGCGCCTCCTCAAGGGGGCAGCGCAGGACCACCAGCACCTCAGGAGGATGACGATTACGAGGGAGGCTTGTGTTAA

Function

symbol description
napgb Predicted to enable soluble NSF attachment protein activity and syntaxin binding activity. Predicted to be involved in intracellular protein transport. Predicted to act upstream of or within protein transport. Predicted to be part of SNARE complex. Predicted to be active in vacuolar membrane. Orthologous to human NAPG (NSF attachment protein gamma).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005774 vacuolar membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005483 soluble NSF attachment protein activity molecular_function
GO:0019905 syntaxin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-171 Predicted to enable soluble NSF attachment protein activity and syntaxin binding activity. Predicted to be involved in intracellular protein transport. Predicted to act upstream of or within protein transport. Predicted to be part of SNARE complex. Predicted to be active in vacuolar membrane. Orthologous to human NAPG (NSF attachment protein gamma).

Ensembl:

ensembl_id ENSDARG00000043012

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033100 True 935 mRNA 0.52 12 54364273 54387550

Neighbor

gene id symbol gene type direction distance location
XLOC_016944 NA coding downstream 209104 54153450 ~ 54155169 (-)
XLOC_016943 CABZ01050249.1 coding downstream 310048 54043678 ~ 54054225 (-)
XLOC_016942 abhd8a coding downstream 324980 54015958 ~ 54039293 (-)
XLOC_016941 FO834855.1 coding downstream 438965 53909462 ~ 53925308 (-)
XLOC_016940 capsla coding downstream 467973 53890006 ~ 53896300 (-)
XLOC_016946 acss2l coding upstream 199097 54586647 ~ 54639964 (-)
XLOC_016947 FQ378001.1 coding upstream 339756 54727306 ~ 54727426 (-)
XLOC_016948 NA coding upstream 396274 54783824 ~ 54787578 (-)
XLOC_016949 CABZ01086574.1 coding upstream 531707 54919257 ~ 54946834 (-)
XLOC_016950 NA coding upstream 595773 54983323 ~ 54984653 (-)
XLOC_016934 NA non-coding downstream 1434552 52927696 ~ 52929721 (-)
XLOC_016931 NA non-coding downstream 1682485 52628252 ~ 52681788 (-)
XLOC_016929 NA non-coding downstream 1895334 52465535 ~ 52468939 (-)
XLOC_016926 NA non-coding downstream 2160201 52202119 ~ 52204072 (-)
XLOC_016951 NA non-coding upstream 672276 55059826 ~ 55071544 (-)
XLOC_016952 NA non-coding upstream 827636 55215186 ~ 55224575 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000075_00656048_00662437 NAPG coding CI01000075 null 656009 ~ 663751 (+)