XLOC_017661


Basic Information

Item Value
gene id XLOC_017661
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 47154473 ~ 47160446 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036419
TTTCCAAACTTGTATGTCTTTTTCCCGTGAGGTTTCCCTCTATCTTTGTatatttgacaataaaacatttatttaaaaaaagaaagctgGTGATTTTTTAGAATTCTGTACAGTTCATTAATTACATTTCTATCAATGATTTGTAGAAAACACTAAGGACTGCTGAAGcctcagaaaaaagaaaaacccttCTAAAAATTCTAGAAgacagagaggaagagagaggccCCACTTTTTGAAATGGGtcctcccccccaaaaaaaacacaGATGACAGAGATCACAGATTTTCTGACAGCGAAGATGAAGTAGTAACTCTTCTTCTTCAAGAAAATATAGATCAATGAAGACACAAAATCAAGAGCTTTAAGAAGAGCTAAAGAAATCAACAAACAAGGAGTCGAGCCAGGTCCAGTCAATAATATGGTGATTTTGTCTGCGAGGCGCAAAGAGAGGAAACTTGCTGAAGGATTAAGGAGTACACTTTATAAAGATGTCACCAGTGAGCTGTCTGATCTTTCAGTCCTTCAAGTGGCAGAGATTTACAAACACTTTGCCAGTTCTACAGCCCCTTTGGTCACCACAATTGGGATGTCGAGTGAGGATTTTTGGGTGGATTCTGCCTTCGGAAAAACTCAAATTGGAAGTGTCCTGTCATACCAACAGCCAGCTGCATCAAACCGCAACATTGTTCCTCATCGTGATGCCCCACCAACACCACCACTGCCACTAGATGGTTACAGCCACCTGTCTGCTTGTTTTttccaagcggcaacctcccgctctccctcaggaagccaatacggaagtaactaaaactgcaattcatccgaaattccgacacttgagtgacagttaggtctcgctggtcgccgtcacgtcacctctgcagattagccactgaactcggcatatttatcgtatttctgtgttgttttatgtggctttacacagtcaactgccttttggacttgtttcctacaattattagatggcatggcatgctgagggcacttaattgtgctcacaaaccatttacgtggcctccgtttcccatgtgagtaaagttatatacttatataccatctctatacatgtatttgttttatttaagatcatttatcgtttatatttatatttagagctgtaatgcactccagaatctgtcagattgattagctgtaggctctagaacagtcatctgaagtgttgtcatacagtgttatgctggatttcatcaatagtcttacagtaactaacacagactatatctgaagtgtttggaagaaatttgcgttttcctcctgttaaaaaacgtcataagaacaatgtttagtggctcaatgtattacagcagtgtttttaaaagtctaaacactttattgatatagtgtacaaccaagcacaagtggctagaatacaaacgagtcacaggtgataaagtattaagcatttctcccaaagtaaagtgtgtctgaaccaggtccaagctaaatgctagcaggtgtctgtagctccgctcactctccgcctctttgcccttgtttggtatcccgccgtgggtgtgatgacgcgtgaccaaaatggcaacggttggccgcgcctacttgtggcttcttttgcgctcttcagaaacctatgggtgacgtcacggatactacgtccatatattttacagtctatggttttttCATAATAATCAGGAACAACTTCACATGAGGTCATTGACCATAACTTCAGAAATGGCTCACTATGTTGAGCAAGCCACCAGATATCAGAGTGCATGTCTTGATTGGCATTCTGTCAGGAAAACCCGGATAACATTGTCACGCTTCAGTAAGATGTCTGTCATGTGCATGGCCAGACCTCAGCTGAACACCTGGCCGAAAGAATCCACAAGGAACTCGCCAGACAGCCGACATGAAGCAAGGACTTCAAATGGAGTCTGAAGCAGTTATGGAGTACTGCTTGCTGCGAGAGGTAAATTACCAGCCATGTGGATTTTTTTGAATTCACTCTGATGCTCCTTGGCTGGGGTCCTCTCCTGATGGGATAATTTTTGACCCCAACGAGCACCTTGTTTTTGGCCCTCTAGAAATAAAATGTCCCAATGTCAAAAGTTTTGTTGACTGTTCTTACCTCAAATTTCACAATGGCACACCAGAACTGAAACAGCAACATGCCTACTACCAGCAAGTCCCAGGAAAAATTCTCATCTAAGGATTGGACTGGTGTGACTTCATCATTTATGCAAAAGATGACATGATGATTCAACGCATTTATAAAGACATCAAAATGTTTTAGACCATTCTGGAAAAAAGCtgaccttttattttttttacttttaccttCCAAGATGCCTACAGatgtaaacaaaacacacacacgtgcacacacacacacacacgtgtacacacatgcacacttttaATTTAAAGATTGTTTAATGTTATATCTACACATCACTGTACAGAATGTTTACCAATTCATCaaagttatttaaatttacaCATGTGCAATTGTTTAAAGTTATTAATATTTAGGTACTTGTATTACTAGAGAGCAAATGTTCGGTTGTTTGTATTTACTTATGTACATTAttctttaaagttatttatttacattactgCAGTTataatattcacacacacactcatggtaCAATCTGTTTAttacccaaggctgagtgtactctcagctgtttttatcaaaactggttatcTACATTCAGGCTGCTATATTCTCAccacacaaagtctatcttgaataaaaaggaaaatcactttaaacagaattaacacataataatattatcaaaacCCCTTTAAGGGATTCAATCCTCAAGCCCTTCAGTTCCACttgaggtctccatgacctctgacctgatTTGAGAGTTCCTGAAAATACAGTTTTGACAGACAAAGATAGCGACAAAGACACTTCAAGTGAAAATtcctaaattcattcattcattttctttttggcttagtccctttattaatctggggtcaccacagcggtatgaaccgccaacttatccagcatatgttttatgcagaggatgcccttccagccacacacCGCCACACAATCAGGTCACAAAGAACTTTCCATGCAACCTCCTAAAGTTTAGGAACTAccaatacagcaaaaaaaaaacttctgcaaaCAGACTCTCAACTGAGGACAACCCAGGACAACTACCACTCACAAGCAATGAATCCCAAGGATGTCACTGAAGCGGAGTCACCAACCAATCAGGAACGCCGTGTTTCGTTGAGGCCAGTCGGCGAAGGAAACTTAAACAAATGTCTCTTGCTGATCTGgcactgttgccaactattttcaatgaaaaggcactaagctctgcccgaaaagtcgctagattacgtcatacgtcaatttgcatattactgaagTCATCACATTctaccatttctgtttaacagcctatgttaataaaggggtatttatttGCACTATGCTTTATATAAccatgtcaatttaactaaatttattgctgtttgaatacaatatatcattatagatgtgtagtgaatttgcagtaatgtCCTAgctgtaataaactcagacaagttcagaaactgtcactaaagtatctgtgattgtgaacaagaataGAATAAACAGTCAACCTAAATTGTtcaaataaaggagaagcagattgGTCTGACAGTACAAGGGAATTACCTACGCACtgccggtgctaaatcatttgccatCGGTACGCAGATGGGTGATCTGCCTtgaggctgcaggtgggagaggctgctgtacgaggactgactgggcagcctgtcagtgctgtgaggcgggggagggggcGGTGGCATCACATGCAGCGCGTTGAGatgagtagggacggtacagtatggacaaatgacagtctataaaaatctccaataacacacagaaaagtcgctagatttgtcgctagtcacttttttgaaaatttgtctctggggggtctgaaaagtcgctaagttggcaacactatGATCTGGTACAAACtgatcttaagcagttaaagataagccaaatctctgcttttgtggtttctcaggtgtgaATCTAAGAGCTAGTAATAAGAGCTAAAATTAATTTGGAACggttgtcaactcattttgcaCAAGCACCAGAATTAAGAACCACTCCTCTGGGgtatgtaaaataacaaaatgaattGCCCTACTAAAGTTACTTCTCTACTTCAGTATATCTCTGTAAATATATctttacaacatttaaaacattttatcaaCAGCCAGTTGATAAAAAAGGGTTGGGGCTTCCTGagcatttatttcattataacgCCTTTAGTCTGAGACATCTCGCACACTGGTCCATCCCTCCTGAGAGAGCTCATTCTTGGTTTATGGTTGAACAAGCCATCCTACTTCACCTTCCACCACCacaatgtccatccatccatttatttattttatttgtaaatgtgttattCATGAGGCTGatctcaaaaatataataatttgtcAGAATCTTAGGTGCAGGCTAGGACTGTCTCTGCCATTTGCAGATAACGTTGTCCTCTTGGCTTCAtaggacatggaccttcagcacgCAGTGAgacggtttgctgctgagtgtgacatggcagggaaagaaaccgcacctctaatgctgcgttcacaccagacacggcacgcgcatcaagcgtgagtgatttacatgttaagtcaatgcaaacgcgcaaatagacatcctgcggcgcgtaTGACGAGAATTGAGCGAATGgtgcggggcgaattgagcgttttgcgcgtttgacatgcttaacgagcgttttgtgcgaatctctcgagtttgaaaatctaaccttcagcggacattcgcgccgcgttaacctatcagaagcttgctcttgtgggggcgtgattgtgacgtagaacatgttgatggtgtcccaggggaaatcctccaggcgacactgacaacaagtcatcaaactgggcttggctcagtcagaagcaccgttgaaagcctccgtcatccaggttcagtttctggaggagtttatgagctcacagagctggatgcacctctgaaagtatgcagtggactcagacatgaccCTAAACATatcgacactgtttttcagtctccataaagcacattaacattgttattttctcaataaaatccatgttagccatttagctatgaagctagagtcaccgggcagacagaagccctgcccctCACGCGAATCCActtctgttttgaagtgaatttgacacaaggtcaaaagaaacagacagtaaaatcagacaaataaaaggagaatcattaatatcattgaagatgtttttgggggcctctttttttgttttaacaaactcatccctcaggtttttgcaaacttttacaaaaactttcctaCTTTCctactgttgcaatttctagc

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036419 True 5448 lncRNA 0.41 3 47154473 47160446

Neighbor

gene id symbol gene type direction distance location
XLOC_017660 si:dkeyp-104f11.6 coding upstream 2607 47143900 ~ 47151866 (+)
XLOC_017659 CR385078.4 coding upstream 41151 47110856 ~ 47113322 (+)
XLOC_017658 CR385078.3 coding upstream 48216 47106094 ~ 47106257 (+)
XLOC_017657 CR385078.2 coding upstream 49600 47104710 ~ 47104873 (+)
XLOC_017656 GNPAT coding upstream 207899 46924390 ~ 46946574 (+)
XLOC_017662 NA coding downstream 21988 47182434 ~ 47185329 (+)
XLOC_017663 znf975 coding downstream 36060 47196506 ~ 47202102 (+)
XLOC_017664 CABZ01076801.1 coding downstream 246704 47407150 ~ 47407264 (+)
XLOC_017665 rab10 coding downstream 274263 47434709 ~ 47471595 (+)
XLOC_017666 lin28b coding downstream 330801 47491247 ~ 47531869 (+)
XLOC_017654 NA non-coding upstream 391780 46741104 ~ 46762693 (+)
XLOC_017649 AL929435.1 non-coding upstream 600313 46553223 ~ 46554160 (+)
XLOC_017667 NA non-coding downstream 373582 47534028 ~ 47544552 (+)
XLOC_017668 NA non-coding downstream 395254 47555700 ~ 47712588 (+)
XLOC_017669 BX005121.1 non-coding downstream 599340 47759786 ~ 47759908 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1421360 LOC106593263 misc NC_048581.1 CM023235.2 13973506 ~ 13994917 (+)