XLOC_001779


Basic Information

Item Value
gene id XLOC_001779
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 419233 ~ 420892 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005791
CCTACACTGCTCCTTCTCaagttgtgattggtcagatgaccctaccTTGCTGACTCTACCATCCTCTAATTGGAAAGGTGACTCTAATGTGCTCTGATTAGTCAGGTGACCCTACTCAACTCTGATTTGCCTTATGCACCTACTCTGCTCCTTCTCAAGTTGTGATTGGTGACCCTACCTTGCTGACCCTACCAGGTGGCTTTGGTCAGATGGCTTtaatgtgctctgattggtcatgtgACTCTATTCAGCTCTGAATGGTCAAATGCACATACTCTGCTCCTACTCAAGttatgattggtcagatgaccctaccTTGCTGACTCTACCACCCTCTAATTGGAAAGGTGACTCTAATGTGCTCTGATTAGTCAGGTGACCCTACTCAACACTGACTGATTACATGCACCTACTCTGCTCCTTCTCaagttgtgattggtcagaagacCTACCTACCTTGCTGAGCCTACCATCCTCTAATTCACAGGtatcaaagccagttcctggagggcctcattaaacacacctgatcaaactaattgagtctttcaggcttgcttaaaacctacaggtaagtgtgttggagcagggttggaactaaagagTGCAGAGCTGCGGTTCTCCAGGAACTGGCCTTGACATCTGTGCTCTAATTGGTCAGGTGGCtctactgtgctctgattggtcaggtgatCCTACTCTAAATGCACATACTCTGCCCCTACTCAAgttgtgattggtcaaatgagcctactcttctctgattggtcagaggaTGCTACCATTCTCTGATTGGCCCTACcttgctctgattagtcagatggcCCTATAGTGGTTCAGTGCTCTATAATAGGTCAACAAATGAAACAATAACAAATGTCACAAAccttggctgcgtccgaaaccgcctactactcagtaggtactgcatttgaatttaaacatactactcagccgttggaaaagtacgttctatacagtatgaatgggaAAAGTATGAACGGAATTccccattttgtcatggtcacgcgacctacctgcgtcagctgcgtcgctttactcccattcatgaattctctcgcggggaatcatgggatagcgcagcaggcatgggatgcgcactccagaatcttgccGGGAGAAGCatactcgcatactgattttcgaattctatgaatttgtacatactactcggctcgcatactgattttagcgtactatacagTATGGaggtatgcggtttcagacgcagccctgGACCCGTGGAGAAGGTACAGCTGGGATTTCCGGCGACTGCTGACTACTACTGCGAAAGCTTCGTTATCCAGAATTGACCCGCAGGGTTGATGACATTTCCCTGTTGTGTGGATTTGCTTCAGTTGTAATCTGTCATTCCAGTTCAGCTTCTTGATGAATATTCTGTGATCAGTGCAGTTCAGAGTCCCTCTCATTAATTCCTCACCTCTGAATGTTGCTTATGCGGGATAACACACAAAGATGGCTACACATTCTCAAGGCTCATACTGAGATGCTGTTGCGCAGGACTCTGTAAAGACATGCTGATATCACACATGTACATATCTGTAAATCTTTCCTATATTTATGAATGTAATCTGTAAATAAAGACCTGGGACCATGTCTGCAAACATCCACAAACGCA

Function

GO:

id name namespace
GO:0010452 histone H3-K36 methylation biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005791 True 1660 lncRNA 0.46 1 419233 420892

Neighbor

gene id symbol gene type direction distance location
XLOC_001778 dact3a coding upstream 2045 406146 ~ 417188 (+)
XLOC_001777 FAM222A coding upstream 19020 399363 ~ 400213 (+)
XLOC_001776 NA coding upstream 20474 398344 ~ 398759 (+)
XLOC_001775 si:ch1073-303d10.1 coding upstream 36617 375042 ~ 382616 (+)
XLOC_001774 zgc:171929 coding upstream 69477 334627 ~ 349756 (+)
XLOC_001780 zdhhc8a coding downstream 7377 428269 ~ 432188 (+)
XLOC_001781 zdhhc8a coding downstream 18800 439692 ~ 449159 (+)
XLOC_001782 zdhhc8a coding downstream 32727 453619 ~ 454622 (+)
XLOC_001783 arvcfa coding downstream 46034 466926 ~ 505370 (+)
XLOC_001784 si:ch211-242f23.3 coding downstream 85646 506538 ~ 512306 (+)
XLOC_001773 NA non-coding upstream 135302 282324 ~ 283931 (+)
XLOC_001770 CU469093.1 non-coding upstream 207286 211782 ~ 211947 (+)
XLOC_001767 NA non-coding upstream 285264 121898 ~ 133969 (+)
XLOC_001764 NA non-coding upstream 359485 58893 ~ 59748 (+)
XLOC_001786 NA non-coding downstream 119401 540293 ~ 543589 (+)
XLOC_001789 NA non-coding downstream 312895 733787 ~ 796894 (+)
XLOC_001790 CU694495.1 non-coding downstream 384352 805244 ~ 805359 (+)
XLOC_001791 NA non-coding downstream 438463 859355 ~ 937042 (+)
XLOC_001794 NA non-coding downstream 1117407 1538299 ~ 1540732 (+)

Expression


Co-expression Network