XLOC_001783 (arvcfa)


Basic Information

Item Value
gene id XLOC_001783
gene name arvcfa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 466926 ~ 505370 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003581
GCGGACACACCGCTGCATTTCCCCGCAGACGCCCGGACAGCGCGCCGCCAGGATGCCCGCGGAGAAACCGGACCCTGAGGAGCTGCCGACCCAACCCTCGTCTCCAGATAACCCAGAGCAGGAGATTGTTCAGGAGACGGCGGATTCTCCATCTTCAGATGCCGTCGCAGAGGCACATacggAGAGCTCTGGGATTGGCACAGAGAAATCGTCCAGTCCTGACAGCGAGTCGAACCCACTTAGCTCCAGCAGCTCTAATGAACAGGTCATTCCCAGCGTCCTGAAGGAGAGTTCATGTGAAGAGTTGGACGACTCTCAGACATCATCTCCAGATGATCAGTGTGTAAATCAAGCAGAAGCTCCTGATGGATCTCCTGAAACGGAGGATCTTCCTCCTCATCCTGAACCCAGCTTGACGTCTGACCCTGCAAAGGAAGATCTTAAGGACCCGCTGGCTCTCTACAGTACACTACCAGCTCACAGCATGACCCTGCTGCACGGATTAACCTACCATCCATCCTTTCCCACCAGAAACTATATACCAGAGAACTGCTACACGCTGCCGCTGCACCGGGACAGCTTTCCAAACCGGAAATCGGAGCAGGATGTCTCCGCAGTCAGCCATCCCGTCCATCACATCCGGCCGACTCTGGATCTGTCAGCAGATGATCACCTGGCACCGCTGCAGCACGCGTATTTCCAAGACCTCTACCGGACACTCATCCCGCAGAAACGCGCCAGCATGGTCAGCCTGGACACCATCCGGAAGGACCCACGCTGGAGGGACCCAAACCTGCGGGAGGTCATCGCCATGCTGAGCCACCCCATGGACCCGGTGAAGTCTAACGCCGCCGCGTACCTGCAGCACCTCTGCTACGAGAACGATAAAGTCAAGCAGGACGTCCGGCAGCTGCGCGGGATCCCCGTCCTGGTGGGGCTCCTGGATCACCCCAAACCCGAGGTGCACCGTAAGGCCTGCGGAGCGCTCCGAAACATCTCCTTCGGCAGAGACAACTTCAACAAGGTGGCGATCAAGAACTCGGACGGCATCCCGGCGCTGCTGCGGCTGCTGAGGAAGTCCAATGACGTGGAAGTCCGAGAGCTGGTCACAGGAACGCTGTGGAATCTGTCGTCTCACGAGCCGCTGAAGATGATGGTCATTAATCACGGCCTGCAGACGCTTACGGACGAGATCATCATCCCGCACTCGGGTTTAAGAGGAGACCCCAATGATCCAGCCCGTCCCGGAGACCCAGAGTGGAACACCGTCTTCAAGAACACGTCTGGATGCCTCAGgaacGTGAGTTCAGACGGAGCCGAGGCGCGGCAGAGACTGCGGGAGTGTGACGGACTGGTGGACGCCCTGCTGCACGCGCTTTACTCTGCCGTCGCTAAAAGAGACATAAATAACAAATCGGTGGAGAACTGTGTCTGTATCTTGCGTAATCTCTCCTACCATGTGCACAAAGAGGTTCCCGGAGCTGAGAAATTCCACATCCAGGCGGCCAGTCACAATGCCAAACCAGCAGGACACCACAAGAAGGACAAGCCGGACTGTTTTGGCGGACGGACAACCAAAGGCAAAAGACACGGAGCTGTAGAGAAGAAGAGCGGCGGTGCTGATCTGCCCAAGAGGAGTCTGCCGATGAGAGgactgGAGCTCCTGTACCAGCCAGAGGTGGTGCGTCTCTACCTGTCGCTCCTCAAGCTGAGTCAGAACCACAACACACTGGAGGCGGCGGCTGGAGCTCTGCAGAACCTGTCAGCCGGACACTGGGCCTGGTCTAACTATATCCGGGCGACAGTGCGTAAGGAGAAGGGTCTGCCGGTGCTGGTGGAGCTGCTGCACTCGGATGCGGATAAAGTAGTGCGAGCTGTGGCCATCGCGCTCAGAAACCTGGCCATCGACCACAAGAACAAAGACCTGATCGGGAGTTACGCCATGAGGGATCTGGTCAGCAACCTGCCCTGCGGCCAGCAGCGCCCCGCCAAAAACCTGGAGGGAGACACGGTAGTGGCCATCCTGAACACCATCCTGGAGATCATCTCCGAGAACCTGGAGAACGCCAGATTCCTCATCCAGGGACAGGGCATTCAGAAACTGGTGTCAATCAACAGAACAAGCCAATCAGTGCGCGAGACCAAAGCGGCGTCACACATCCTGCAGGCGGTGTGGGCCTATAAAGACCTGCGACACACACTGCTGAAGGCCGGCTGGAACAAAACACACTTCAAGCCAGCCGTCTCCAGCCTGCCCAAAAAACTGAAGAACACCAAACAAGGGAACGATGACATCACACTGCCGCTGATGGAGAAGAACCAAGacggATACTGCAGCGTGGATCAGCCAGAGAGAGCAGGAGACGCTCCCTGCCACATGATCGAACGAGAAACTTTTCAGGGTGTGAATGATAAGAGGCACTTCATCAGGACCAGCAGGCCGGCGGTGGGCTTAGTGGAGCGGACCCCTCAGCCGCTGGACTCCTGGGTCTGAACTGGCTGCAGATCCACATTGACAGACGCGACCAGCCTTCAGCACAATCAAACCAGAGAAAATCAGCagatcatcatgtgttcatcatCCACACCAACAGAAGCTGGAGGAACGGCGTCGAGATCGTCTGGAAGTGGACTTTGACTCTTTGCTGCTTTTGGCAATCTTCACTGTTAAACTCAAGATTCATGATGTGAGCAGTCGTCTGGAGATCTGATAATCCGCCATATTATGATCTTGTGTTGTTTCTATGCTTTCCTttcctttgttttctttgttgacGAGTCTCTAAAGTGTATAGTAAGTGTTCCGGATGTTTCTGTGATTAACCTCATGGACCATTTCAGTTCTCTGTCTTATGTTTTATGCACAAAAGAAATGATATCATGATATATGATGAATATGAGTAGATCATGGGGCTAAAattcacattaaaaaatactgtagtaacttacggtaaacactgcagtgtttttgaAGCGTACAGTAGTACAGTACAATTAATCTGGT

Function

symbol description
arvcfa Predicted to enable cadherin binding activity. Predicted to be involved in cell-cell adhesion and cell-cell junction assembly. Predicted to act upstream of or within calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules. Predicted to be active in several cellular components, including adherens junction; nucleus; and plasma membrane. Human ortholog(s) of this gene implicated in DiGeorge syndrome. Orthologous to human ARVCF (ARVCF delta catenin family member).

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0007275 multicellular organism development biological_process
GO:0007043 cell-cell junction assembly biological_process
GO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0005912 adherens junction cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0045296 cadherin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091113-43 Predicted to enable cadherin binding activity. Predicted to be involved in cell-cell adhesion and cell-cell junction assembly. Predicted to act upstream of or within calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules. Predicted to be active in several cellular components, including adherens junction; nucleus; and plasma membrane. Human ortholog(s) of this gene implicated in DiGeorge syndrome. Orthologous to human ARVCF (ARVCF delta catenin family member).

Ensembl:

ensembl_id ENSDARG00000074329

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003581 True 3004 mRNA 0.55 16 466926 505370

Neighbor

gene id symbol gene type direction distance location
XLOC_001782 zdhhc8a coding upstream 12304 453619 ~ 454622 (+)
XLOC_001781 zdhhc8a coding upstream 17767 439692 ~ 449159 (+)
XLOC_001780 zdhhc8a coding upstream 34738 428269 ~ 432188 (+)
XLOC_001779 NA coding upstream 46034 419233 ~ 420892 (+)
XLOC_001778 dact3a coding upstream 49738 406146 ~ 417188 (+)
XLOC_001784 si:ch211-242f23.3 coding downstream 1168 506538 ~ 512306 (+)
XLOC_001785 npffr1l3 coding downstream 13176 518546 ~ 532628 (+)
XLOC_001786 NA coding downstream 34923 540293 ~ 543589 (+)
XLOC_001787 bmp10l coding downstream 57882 563252 ~ 566607 (+)
XLOC_001788 smad4a coding downstream 68297 573667 ~ 592860 (+)
XLOC_001776 NA non-coding upstream 68167 398344 ~ 398759 (+)
XLOC_001773 NA non-coding upstream 182995 282324 ~ 283931 (+)
XLOC_001770 CU469093.1 non-coding upstream 254979 211782 ~ 211947 (+)
XLOC_001767 NA non-coding upstream 332957 121898 ~ 133969 (+)
XLOC_001789 NA non-coding downstream 228417 733787 ~ 796894 (+)
XLOC_001790 CU694495.1 non-coding downstream 299874 805244 ~ 805359 (+)
XLOC_001791 NA non-coding downstream 353985 859355 ~ 937042 (+)
XLOC_001794 NA non-coding downstream 1032929 1538299 ~ 1540732 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000203_00425991_00429634 NA coding CI01000203 null 425991 ~ 430118 (+)