XLOC_001784 (si:ch211-242f23.3)


Basic Information

Item Value
gene id XLOC_001784
gene name si:ch211-242f23.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 506538 ~ 512306 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003582
TTTTAAAAGTGCATCATAATCGGTTACAGAATCGGCGAATCTTCCTATGCAGAGCTGCAGAAATGAGTGAGAATCATCCATTACAGATGGAGGAGATTGAAACCAGCCCGAGGAGAAGCACTACAGAATGTTTCTCTCCTGTTGTCTCCTCATCTCCTGCTGAACACACAGCTCTGAGCTCCACAGCGGCCCCGCAGACGCATGCTGCTCCACAAGAACCCCCCCGCAGAAACACCAGCATCCGCGCGGCTCATCCGGCCATTTACCTGAACACTAGCTCACACAAGCTCCTGCGGAAGGCAGTGCGCATCTGGAAGAGGCCGTTCCCCGTCTTCACCCCTCTGTCCTCAGTGTCGAGGGTCAGGAGTTTTCAGGAGCGGGTTCAGATGCTCCAGAGTCAGCCTGCAGTCTCCAGATCCCCGCAGCCCGTGTCCAGATGCGTCAGAGATCTGCAGCTGCGCAGTTCTGGGACGGATTCCTCCCCGTCGCCCTCCAGTAGGTCAGATCAGCCTCCGATCCGTCGCCGCAAGCGCCCGGCAGTTATACGCAGCTACAGATACCGCAGACAGATGCAGTTATACCGCATGCTGTCCAGCTGCAGGAGACTCAAGCAGGAGGAGCGGACAGTGCACACACTGCAGGGTCAGTCGTCACCTGCGGGATCCTCTCCTGTTAAAGGTTCTCAGGGTGCAGATGATGGGTCAGATTCAGAGTCTTCTCCAGTGATCCGTCCACCACCGAGGAAGACGAACCGTCGGCTGTGGCGCAGACAACTGGACAGCAGCAGCTCCGACAGCGGCCCGATCACCACTAATCCCTTTACCACAGGAGCAGACACACTGAAGAAAAACTCCAGCAGAGCGCTCTCAGATTTCGCAAGTGTGCTGAAAACCTCCCTGAGCTTGATCGGGAGCGATGTGAACTCCTCTGAGGTCGTCCCAAAGAAATCATCGACTACTCAAATGTATGAGGACTCAGACGAGCAACGGGAGAAGACCCCGAGCTCTTTCGTTTCTCGGCTGAAGATGTTCAAAGAGAAGCTCAGGCAGTGTGGAGAGGTCAGGACGTCCCCGGCGTGTGTGAAGTGGAAAAGTGTGCTTCTTCAGAGAGCTCTGCGCTCCCCTGCACTGTCCTGCGAGAGTCCGAGTCCTGAGACATCATGGTGCAGGTTTACACTGCTGGACTGCTCAACACCTGCAGGCCGGAGCGACACAGACACACCTCAGGTCAACACTGAAGGCCACAACAAGAACAGCATGGCAGGAGATTACTAGTCTTGATCTTCAGATTCCCGTGGATGAAGTGAACCAAGCAGACGATCAGGAGCTCAGTGTTGATTTCAGAACTAATCTCTGCACTCGGCTTGATGAAGTACTGCTGTTGTTTTAATCTGCCCTATTAAACTGGTATTTAATCAGCACTGA
>TCONS_00003583
ACAGAATCGGCGAATCTTCCTATGCAGAGCTGCAGAAATGAGTGAGAATCATCCATTACAGATGGAGGAGATTGAAACCAGCCCGAGGAGAAGCACTACAGACTTGTTTATGTGTTGCAGAATGTTTCTCTCCTGTTGTCTCCTCATCTCCTGCTGAACACACAGCTCTGAGCTCCACAGCGGCCCCGCAGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095223

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003582 False 1424 mRNA 0.54 5 506538 512306
TCONS_00003583 True 192 processed_transcript 0.49 2 506563 507256

Neighbor

gene id symbol gene type direction distance location
XLOC_001783 arvcfa coding upstream 1168 466926 ~ 505370 (+)
XLOC_001782 zdhhc8a coding upstream 51916 453619 ~ 454622 (+)
XLOC_001781 zdhhc8a coding upstream 57379 439692 ~ 449159 (+)
XLOC_001780 zdhhc8a coding upstream 74350 428269 ~ 432188 (+)
XLOC_001779 NA coding upstream 85646 419233 ~ 420892 (+)
XLOC_001785 npffr1l3 coding downstream 6240 518546 ~ 532628 (+)
XLOC_001786 NA coding downstream 27987 540293 ~ 543589 (+)
XLOC_001787 bmp10l coding downstream 50946 563252 ~ 566607 (+)
XLOC_001788 smad4a coding downstream 61361 573667 ~ 592860 (+)
XLOC_001789 NA coding downstream 221481 733787 ~ 796894 (+)
XLOC_001776 NA non-coding upstream 107779 398344 ~ 398759 (+)
XLOC_001773 NA non-coding upstream 222607 282324 ~ 283931 (+)
XLOC_001770 CU469093.1 non-coding upstream 294591 211782 ~ 211947 (+)
XLOC_001767 NA non-coding upstream 372569 121898 ~ 133969 (+)
XLOC_001790 CU694495.1 non-coding downstream 292938 805244 ~ 805359 (+)
XLOC_001791 NA non-coding downstream 347049 859355 ~ 937042 (+)
XLOC_001794 NA non-coding downstream 1025993 1538299 ~ 1540732 (+)

Expression


Co-expression Network