XLOC_001792 (unc5c)


Basic Information

Item Value
gene id XLOC_001792
gene name unc5c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 1052591 ~ 1107558 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003591
gtgGAGTGGCTGAAGAACGAGGAGATTATCGACCCTGCAGATGACAGAAACTTCTACATCACCATCGACCACAACCTGATCATCAAACAGGCCCGTCTGTCAGACACCGCCAACTACACCTGCGTGGCCAAAAACATCGTGGCCAAACGGAGGAGCACCACAGCCACCGTCATCGTCTATGtaaaCGGTGGCTGGTCAACGTGGACTGAGTGGTCAGTGTGCAGCAGTCGATGTGGTCGTGGCTTTCAGAAAAGGACTCGCAGCTGCACAAACCCTGCGCCGCTCAACGGAGGAGCCATCTGTGAAGGACAGGCCATACAGAAACTGGCCTGTAACCCGCTGTGTCCTGtggacGGTCTGTGGACGGAGTGGAGCAAATGGTCGACGTGTGGGACGGAGTGCACTCACTGGAGACGCAGGGAATGCAGTGCTCCAGCCCCCAAAAACGGAGGAAAAGACTGTGAGGGAACCGTGCTGCAGTCAAAGAACTGCACTGACGGACTCTGCATGCAGAGTTCCTTATATCAGAAGTCCTCCGAGCACACAGACAAGAGCAATGCTCTGCCACATCCATcggCCCCTAGCACAGATGACGTGGCGCTGTACGTGGGCATCGTGATCGCCGTCATCATGTGTCTGGTGATCTCGGTGATCGTGGCGCTCTTCGTCTACAGGAAAAACCACCGAGACTTCGACTCGGACATCATGGACTCATCTGCGCTCAACGGAGGATTCCAGCCTGTCAACATCAAGACGGCACGcacagcagACCTGCTGACGGCTCCCCCTGACCTGACGTCGGCCGCTGCGCTGTACCGCGGGCCGGTTTACGCTCTGCATGACGTGGCTGATAAAATCCCCATGACCAACTCCCCGCTGCTGGAGCCGCTGCCCAACCTGAAGATCAAGGTGTACAACTCGTCAGGGCTGGTGACCCCGCAGGACGACCCCAGTGACGCCTCGCCCAAACTGCCCCGAGCTCTGCTGGACGGCGACACCATCGgccggcgcacacacacacagacacaaacactaaTGCGCTGCTGGGACCCGTCCTGCACCGCGTTCGGCTCATTCAATGCACTCGGGGGACACCTGATCGTGCCAAActcagGAGTGAGCTTGTTGGTGCCAGCGGGTGCCATCCCTCAGGGTCGCGTCTATGAGATGTACGTGACGGTTCACAGGAAGGAGAGCATGAGGTACGGTGCTGTTCTTCTTGACCAGGATGTTTTTGCTCTTCAGGTCTCGGTGGGCGATGGCCGGTTTCCCCTGCGTGCCGAAGATCTCAGTGTGCAGATGGCAGAGGCCGGAGACGGCGGAGTACGAGAGCCGCAGCAGCGCGCGCGTGTCCAGCGTGGTGGACTTCAGGTAGTCGTACAGCGAGCCGCTCTCGTGATAATCCactgtaacataaacaaatgtggaaaaagtatatatatattgtatgtctgtgtgtgtctgtttctctctctctctctctctccatgtgtgtgtgagtgtatccgtctctctttcactctctctgtgtgtgtgtgtttgtctctgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagggctcCATTCTCTGTAGCTCAGACGCGCTCCTGCCTCTCCGGAACAGGATCGGCTCCTGGATCCCCGGGCTCCGCTGGTGCTCAGAATATCCTGCGTTGGACTGTCTCTGAtgctgacgtgtgtgtgtgtgtgtctctctgtgtgtgtgtgtgtcaggagctGTCGTTCCAGCAGGTGTGGAGCGGCTCTCAGCGTCACCTGCACTGCTGCTTCACTCTGGAGCGCTTCTGCAGCTCCACACTGGAACTCTCCTGCAAGCTGTGTGTGCGGCAGGTGGAGGGAGAGGGGCAGATCTTCCAGCTCAACACCACCCTGACggaggactCTCAGTGCATCGACACGTCTCTCCTGGATCCGGCCAGTAACATCACCACTCTGGTGGGTCCGAACGCATTCCGCATCCCGCTGTCCATCCGGCAGAAGCTGTGCGGGAGTCTGGACGCTCCACAGACCCGCGGCAATGACTGGAGGATGCTGGCTCACAAACTCAACCTGGACAGGTATCTCAACTACTTCGCCACCAAGTCGAGTCCGACCGGAGTGATCCTGGACCTGTGGGAGGCGCAGCACTTCCCCGACGGGAACCTGAACCGGCTGGCGGCCGTGCTGGAGGAAATGGGACGACACGAGGGCATCATAGCAGAACACTGA

Function

symbol description
unc5c Predicted to enable netrin receptor activity. Predicted to be involved in axon guidance. Predicted to act upstream of or within netrin-activated signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in central nervous system and head. Orthologous to human UNC5C (unc-5 netrin receptor C).

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0007411 axon guidance biological_process
GO:0007165 signal transduction biological_process
GO:0038007 netrin-activated signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005042 netrin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9196 Predicted to enable netrin receptor activity. Predicted to be involved in axon guidance. Predicted to act upstream of or within netrin-activated signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in central nervous system and head. Orthologous to human UNC5C (unc-5 netrin receptor C).

Ensembl:

ensembl_id ENSDARG00000087341

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003591 True 2241 mRNA 0.58 12 1052591 1107558

Neighbor

gene id symbol gene type direction distance location
XLOC_001791 NA coding upstream 115549 859355 ~ 937042 (+)
XLOC_001790 CU694495.1 coding upstream 247232 805244 ~ 805359 (+)
XLOC_001789 NA coding upstream 255697 733787 ~ 796894 (+)
XLOC_001788 smad4a coding upstream 459731 573667 ~ 592860 (+)
XLOC_001787 bmp10l coding upstream 485984 563252 ~ 566607 (+)
XLOC_001793 gdnfa coding downstream 289382 1396940 ~ 1414161 (+)
XLOC_001794 NA coding downstream 430741 1538299 ~ 1540732 (+)
XLOC_001795 ora5 coding downstream 483046 1590604 ~ 1591103 (+)
XLOC_001796 sgsm1b coding downstream 531318 1638876 ~ 1675362 (+)
XLOC_001797 CU929183.1 coding downstream 557364 1664922 ~ 1665038 (+)
XLOC_001786 NA non-coding upstream 509002 540293 ~ 543589 (+)
XLOC_001779 NA non-coding upstream 631699 419233 ~ 420892 (+)
XLOC_001799 NA non-coding downstream 590507 1698065 ~ 1713235 (+)
XLOC_001800 NA non-coding downstream 596347 1703905 ~ 1712770 (+)
XLOC_001803 NA non-coding downstream 796797 1904355 ~ 1921020 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G388606 NA non-coding CI01000203 null 677074 ~ 828020 (-)
bowfin (Amia calva) AMCG00010091 LOC108435138,LOC105014579,LOC106585820 coding CM030129.1 CM030129.1 13643088 ~ 13675666 (-)