XLOC_001794


Basic Information

Item Value
gene id XLOC_001794
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 1538299 ~ 1540732 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005803
ACAGGCGGCCATGACTTCAGCTGTAGAGGAGAGTGCAGATGATGAACTGATCTCAGCTCAGGTGAAGACAGAAGCTCCTGGTCTCCTCTCTGTGGATCTGCCGTCGCTCCAGAATGATGAGCTGAAGGACAGAAACTCCTCACTTCTCACacatccagcaaacacacaaacacagagagagcgCTTGTTTATTCTTCAggattttttcttcttcagtattTTATACGTTTTTGCTCCTGAAGTTTTTACCTTCTTGTATGACTCTGAGAGAGCTGGACAGGGGTTTCTTCTCCACACTGGCCGTCAGTAAGGGACTGTGCGTCTCAATATGGTTCACCAGCTGAAGAAGAGGACAGGCAATCAAGCAGAAAACATCCATTCATGTGCTAATCAgcattaaaatgtgttgaaaatatttgtttaatacatttatttgataaataacaCATTTCTTCAACTATAGgcgatgtctatgtgtacatgttcagaGATGTGTACTAGTGTATGAACTCAGTTTTACGTCTCACCAGTCGGGTATTAGCAAACTCTCTGTCCATGTGGTCAGCGATGCTCTGCAGTCTGAGCAGCTGATTGTCCATCTCTGAGAGCCGTGCTGAGATCTGACTCCGGGACATCATTATCTGCTCCAGGGGGTCCCGGGAAGCCCGAACGTTGGTCATTACTTGCTCTAGGGAGTATCGGGGAGCTCGGATGCCAGCCAGGACACTCAGAGTCACGGGGTCTCCACTAAGAACAGCTTCAGGAGACGTGCACACTACTGAGGGCTCTATTGGAGAGCAAGACCAGGACACTACTGTTAGGACATTCTGACATCATTAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005803 True 840 lncRNA 0.47 2 1538299 1540732

Neighbor

gene id symbol gene type direction distance location
XLOC_001793 gdnfa coding upstream 124138 1396940 ~ 1414161 (+)
XLOC_001792 unc5c coding upstream 430741 1052591 ~ 1107558 (+)
XLOC_001791 NA coding upstream 601257 859355 ~ 937042 (+)
XLOC_001790 CU694495.1 coding upstream 732940 805244 ~ 805359 (+)
XLOC_001789 NA coding upstream 741405 733787 ~ 796894 (+)
XLOC_001795 ora5 coding downstream 49872 1590604 ~ 1591103 (+)
XLOC_001796 sgsm1b coding downstream 98144 1638876 ~ 1675362 (+)
XLOC_001797 CU929183.1 coding downstream 124190 1664922 ~ 1665038 (+)
XLOC_001798 triap1 coding downstream 140786 1681518 ~ 1684882 (+)
XLOC_001799 NA coding downstream 157333 1698065 ~ 1713235 (+)
XLOC_001786 NA non-coding upstream 994710 540293 ~ 543589 (+)
XLOC_001779 NA non-coding upstream 1117407 419233 ~ 420892 (+)
XLOC_001800 NA non-coding downstream 163173 1703905 ~ 1712770 (+)
XLOC_001803 NA non-coding downstream 363623 1904355 ~ 1921020 (+)
XLOC_001804 NA non-coding downstream 426125 1966857 ~ 1991468 (+)

Expression


Co-expression Network