XLOC_001799


Basic Information

Item Value
gene id XLOC_001799
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 1698065 ~ 1713235 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005668
AATATAAGAGGTATGAAAGAGTCCAGCCGTGCAAAGTAGAAGTGGACAAGTGGAAGACGTGCTGCTGCCGCCGCCACGAGGGTCCCGGACCCCCGCAGTTTGCAAACACAGACATGTGAAGCTCCAGTCTGTCAGGTCTGTCTTGAGGTGCTTTTGTGTCTTTACTGCCGTTCCCTCTGAAGAGCATATCATCAAGGCTTAGAGTCCCAGGTTTTGTCTAAATGTTATTAATCACATAGATGAGGGAAGAGCCCCAGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005668 True 258 lncRNA 0.50 2 1698065 1713235

Neighbor

gene id symbol gene type direction distance location
XLOC_001798 triap1 coding upstream 13183 1681518 ~ 1684882 (+)
XLOC_001796 sgsm1b coding upstream 22703 1638876 ~ 1675362 (+)
XLOC_001797 CU929183.1 coding upstream 33027 1664922 ~ 1665038 (+)
XLOC_001795 ora5 coding upstream 106962 1590604 ~ 1591103 (+)
XLOC_001794 NA coding upstream 157333 1538299 ~ 1540732 (+)
XLOC_001801 apc coding downstream 136639 1849874 ~ 1893095 (+)
XLOC_001802 C3AR1 coding downstream 186360 1899595 ~ 1900662 (+)
XLOC_001803 NA coding downstream 191120 1904355 ~ 1921020 (+)
XLOC_001804 NA coding downstream 253622 1966857 ~ 1991468 (+)
XLOC_001805 cntnap3 coding downstream 462348 2175583 ~ 2393791 (+)
XLOC_001791 NA non-coding upstream 761023 859355 ~ 937042 (+)
XLOC_001790 CU694495.1 non-coding upstream 892706 805244 ~ 805359 (+)
XLOC_001789 NA non-coding upstream 901171 733787 ~ 796894 (+)
XLOC_001806 NA non-coding downstream 689073 2402308 ~ 2437908 (+)
XLOC_001807 NA non-coding downstream 786298 2499533 ~ 2504042 (+)
XLOC_001815 FP085363.1 non-coding downstream 975330 2688565 ~ 2688681 (+)

Expression


Co-expression Network