XLOC_001805 (cntnap3)


Basic Information

Item Value
gene id XLOC_001805
gene name cntnap3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2175583 ~ 2393791 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003605
CATGGATCACTTTCGCTACCAGTCTTCACATTCAGTCCGATGTTTGAGAACTGTTGCAGTTATCGCTCAGTTAGAGCTGTGATTCTCCGCTGGTGTCCGGTTTGCCTCAGTCGGCCTTCACTAGTTCATCAGAGCTGTCGAGCAGTCACGGGCCGGGATTCGCCAAACTCAACCGGAGAGACGGTGCTGGGGGCTGGTCTCCGCTGGACTCTAATAAGTATCAGTGGCTGGAGATCAAGCTGGAGCAGCGCACTGAGATTACGGGGGTCTCCAGCCAGGGCCGATACGGCAGCTCAGACTGGGTCACTCGCTACCTCCTCATGTTCAGTGACACGGGACACAACTGGAGACCGTACCGCCAGGAAGACAGCATAGGGGCATTTTCTGGGAACTCCAATGCTGACAGTGTAGTGATGTACAAACTCCAGCAACCAGTGGTGGCTCAGTATCTCCGGATCCTGCCGCTCGACTGGAACCCCAACGGGAGGATCGGCCTGAGGCTTGAGGCTTACGGCTGCCAATACAGTGAAGATGCTGAGCTGTTCCTCCATACATCAGACCTGCACGACGATGTTGTTTTCCACATTAATTATCAGTTTAATACTTGCCCTCCGGGGGTTGTTGACATGCCGACTGTGCAAGCAAACAGATCAATGTCTCGAAAGTGTCGCCAAGTGTTTCAGGAGGTCAGactactttgtttgtttgtttgtttggtaacactttacttgaaggggtgttcacaAGACTTTCATTAAACATTTAGAATCATGACATAAAACCTGTCATGAATgggaatgagattttatgcatctTTATAA
>TCONS_00003606
GGTTGGTGGATTGGTgaagaagaaggtcgctggAGCTGTGATTCTCCGCTGGTGTCCGGTTTGCCTCAGTCGGCCTTCACTAGTTCATCAGAGCTGTCGAGCAGTCACGGGCCGGGATTCGCCAAACTCAACCGGAGAGACGGTGCTGGGGGCTGGTCTCCGCTGGACTCTAATAAGTATCAGTGGCTGGAGATCAAGCTGGAGCAGCGCACTGAGATTACGGGGGTCTCCAGCCAGGGCCGATACGGCAGCTCAGACTGGGTCACTCGCTACCTCCTCATGTTCAGTGACACGGGACACAACTGGAGACCGTACCGCCAGGAAGACAGCATAGGGGCATTTTCTGGGAACTCCAATGCTGACAGTGTAGTGATGTACAAACTCCAGCAACCAGTGGTGGCTCAGTATCTCCGGATCCTGCCGCTCGACTGGAACCCCAACGGGAGGATCGGCCTGAGGCTTGAGGCTTACGGCTGCCAATACAGGTCAGACGTGGCTGGTTTTGATGGTGCTGCTCACCTGCTCTACAGGCCGGATCCCGGTGTCAATCCTGCAGATAAAGACATGTTATCCATGAACTTCAAAACCATGCAGAGCTCCGGCCTTCTGCTGCACATGGAGGCTCACAGCGGACACACACTGACTCTGGACCTGTTCAAAGGAAGACTCGTACTGGCTTTATCAGCTGATTTCCACCCTCTCTGGTCTGTCGGGAGTCTTCTGGACGACCAGCACTGGCACCATGTCAGCATTGAACGGGTTAGAGGACTGGTCAACTTCACCGTGGACAAAAACACCCAGGCTACACAAACAAAAGGTTGTACAAGTCacttaagaaataaaataataataatgataataatgatattaatggggcgtcacggtggcAAATCTCACTCCAGGAGAAACTTCCACGGCTGCTTGGAAAACGTGTTTTACAATGGCGTCAGTGTGATTGATGGCGCCAAAGAGAAGCGAGTGGCCATTACAGGAAACGTCAGCTTTGCCTGTTCTGAGTCTATTGAAGTGCCAGTGACGTTCGCCGGTCCTAGAAGCTTCCTGGCCGTGCCGTGGGTCTCCGGTGGAGAAAGTGTGTCGGTCAGCCTGGAATTCAGAACGTGGAATAAAGCGGGTCTGCTGATGACCTTTGACCTTCAGCAGAACGCAGGAACACTGTGGCTTTATCTGAGCGAAGCCAAAGCACGACTGCAGATCCAGAAGAGCGATCCACAGAGTGTGTTCTTTCTCTCCACAGGTGTTAATTTAAATGATGGTCAGTGGCACCGGCTGGAGCTGGCCATCCGTCGGGGGCGTCTCGCAGTCACCGTGGACCAAACAGACAGCTCTGCAGTGGCCACTTCTGTCTTCGCGGCTCCTGACAGCGTGCTATTCTTAGGCGGATGTCCAGGAGACGGCAGCGGCTGCAGAAACCCCTTCAATGTTTTCCAGGGATGTATGCGGCTCATCCGGACGGACGGCGCTTTAGTGGATCTTATCAAAGTGCAGCAGATGTTGTTGGGGAATTTCAGCGATCTGCAGATGGACGTGTGTGGGATAGTCGACAGATGCTCCCCGAACCATTGTGAACACGGAGGGAAATGCTCGCAGTCATGGAGCACGTTTCACTGCAACTGCTCTGCCACAGGCTACAGCGGAGCGACCTGCCACAGCTCCATTTACGAAGCATCGTGTGAGGCCTACAAACACAAAGGAAACACTTCTGGCTTTTACTACATCGACGTGGATGGAAGCGGCCCCATCAAACCTCAGCTAATCTACTGCAACATGTCAGataaAGCCTGGATGGTGATCCAGCATAATAACACGGAGCTCACCAAATTAAAAACATCCTCTGGGATAAATCAGCACTTGGCCCATTTTAACTATTCGGCGGACGCGGAGCAGATCCGGGCCGTCATCAGCCAATCCGAACACTGCGAGCAGGAGCTGTCCTACCACTGCAGAAAGTCCCGGCTCCTGAACACTCCAGACGGTGCCCCCTTCAGCTGGTGGGTGGGTGGCTCTGGTGAAGCACACATGTACTGGGGTGGAGCAGTGCCCGGCAGTCAGCAGTGCGCCTGTGGTCTGCAGGGGAACTGTGTGCATCCAGAACACTTCTGCAACTGTGACGCCGACAGCAAAGACTGgtccAATGACTCTGGTTTGCTAGCTCATAAAGAGCATTTGCCGGTGCAATCGCTGGCGCTGGGAGACATCAGCCGCTCGGGGTCTGAAGCGGCGTATAGAGTCGGCCCACTGCAGTGCTACGGTGACGGTAACTTCTGGAACACTGCCTACTTCAACAAGGAGACGTCATACCTGCACTTTCCCACCTTCCATGGGGAGCTGAGCGCAGACATCTCCTTCCTGTTCAAAACCAGCTCTTCATCAGGAGTGTTCCTGGAGAATCTGGGCTTCAAAGACTTCATCCGCATCGAGCTGAGCTCGCCAACTGAGGTGGTGTTCTCCTTTGACGTGGGCAACGGTCCGCTGGACGTGCGAGTGCAGACGCCGAGCGCATTAAACGACGAGCGCTGGCATCACGTCAGAGCCGAACGCAACGTGAAGGAGGCCTCACTGTGTGTGGACCAGCATCCGGCTGCCGTGCAGAAAGCCCCCGCTGACGGACACATCCATCTGCAGCTCAACAGCCAGCTGTTCGTAGGAGGAACGGCGTCCAGGCAGAAGGGCTTTCTGGGCTGCATCCGCTCTCTGAAGCTGAACGGCAGGACTCTGGATCTGGAGGAGAGGGCTGCGATCACGCCTGGAGTGAGTGCTGGATGTCCCGGTCACTGCAGCAGCTACGGTGGCCTGTGTCTAAATCACGGCTCCTGTGTGGAAAAATACAGCGGCTTCACCTGCGACTGCAGCCTCTCGCCCTTCACTGGAACCTTCTGTCATAAAGAACTTTCTGCCTTCTTCAAACCGGGAACATCAGTGACGTACACATTTAAGGAGCCGTACGAGCTGAACAGGAACATCAGCGCACAGTCGTCCTCCATCTACTCTGATTTAACGCTGAGAGGAGAGAATATTTCACTGAGCTTCAGGACGAGTCAAGCTCCGGCGCTGCTGCTTTACGTCAACTCCTACTACAGAGAATACCTGTCCATCCTGCTCAACAGAAACGGTCTGAAACCATCTCTTCCTCTCTCCAGCGGCAGGAATCTGGCCAACGGGCAGCTCCACAGAGTCAGCGTCCAGAGACTGGCAGAGACGCTCAGCATTCAGATCTActcagatgtgtgtttgtgttcttgTTTTGCAGACTCTGGTGAAGTGGATCCAGAGATCGGTCGTCTGAATGCTCTGGGCTTCACCGGCTGTCTGTCTGTGGTCCAGTTTAACTCCATCTCTCCGCTGAAGGCAGCTTTACTGTATCCCGACACCAGTCCTGTCATAGTCACCGGATCGCTGAGCGAATCCGGCTGCGGATCGTCTTTATTGTCCAACCCTCACGCAGCGGAGACCACTCACTCCCTCACAGGTAAAGCCAGTACGGGCGAGCCCATAGTCAATGCCATCAACGGTGACTCTGCACTCATCGGAGGAGTGATCGCGGTGGTGATCTTCGTCAGTCTCTCAGCTCTGGCGGTAACAGCGAGATTTCTCTACCGACGGAAAGAAACCTTTCAAAGCCAGGAGCCCAAAGCTGGAAAAACTGACGACAGTCCTGAAACGCCATTCAACACGGATCCAAACTCACAGAGCATCATCAGCGATAACCAAAAAGAATACTTCATATGA
>TCONS_00003607
CTGTGATTCTCCGCTGGTGTCCGGTTTGCCTCAGTCGGCCTTCACTAGTTCATCAGAGCTGTCGAGCAGTCACGGGCCGGGATTCGCCAAACTCAACCGGAGAGACGGTGCTGGGGGCTGGTCTCCGCTGGACTCTAATAAGTATCAGTGGCTGGAGATCAAGCTGGAGCAGCGCACTGAGATTACGGGGGTCTCCAGCCAGGGCCGATACGGCAGCTCAGACTGGGTCACTCGCTACCTCCTCATGTTCAGTGACACGGGACACAACTGGAGACCGTACCGCCAGGAAGACAGCATAGGGGCATTTTCTGGGAACTCCAATGCTGACAGTGTAGTGATGTACAAACTCCAGCAACCAGTGGTGGCTCAGTATCTCCGGATCCTGCCGCTCGACTGGAACCCCAACGGGAGGATCGGCCTGAGGCTTGAGGCTTACGGCTGCCAATACAGGTCAGACGTGGCTGGTTTTGATGGTGCTGCTCACCTGCTCTACAGGCCGGATCCCGGTGTCAATCCTGCAGATAAAGACATGTTATCCATGAACTTCAAAACCATGCAGAGCTCCGGCCTTCTGCTGCACATGGAGGCTCACAGCGGACACACACTGACTCTGGACCTGTTCAAAGGAAGACTCGTACTGCAGCTCAGAAAAGgcAGGGCTTTATCAGCTGATTTCCACCCTCTCTGGTCTGTCGGGAGTCTTCTGGACGACCAGCACTGGCACCATGTCAGCATTGAACGGGTTAGAGGACTGGTCAACTTCACCGTGGACAAAAACACCCAGCAGTTCCAGCTCCCCGAGTACTGGAGCCGCTCTGAGATTGACGAGATCAGTGTTGGTGGTTCTTCACCATCTGGACTCCAGAAATCTCACTCCAGGAGAAACTTCCACGGCTGCTTGGAAAACGTGTTTTACAATGGCGTCAGTGTGATTGATGGCGCCAAAGAGAAGCGAGTGGCCATTACAGGAAACGTCAGCTTTGCCTGTTCTGAGTCTATTGAAGTGCCAGTGACGTTCGCCGGTCCTAGAAGCTTCCTGGCCGTGCCGTGGGTCTCCGGTGGAGAAAGTGTGTCGGTCAGCCTGGAATTCAGAACGTGGAATAAAGCGGGTCTGCTGATGACCTTTGACCTTCAGCAGAACGCAGGAACACTGTGGCTTTATCTGAGCGAAGCCAAAGCACGACTGCAGATCCAGAAGAGCGGCCGGATTCTGACCGACGTCACAGCAGGTGTTAATTTAAATGATGGTCAGTGGCACCGGCTGGAGCTGGCCATCCGTCGGGGGCGTCTCGCAGTCACCGTGGACCAAACAGACAGCTCTGCAGTGGCCACTTCTGTCTTCGCGGCTCCTGACAGCGTGCTATTCTTAGGCGGATGTCCAGGAGACGGCAGCGGCTGCAGAAACCCCTTCAATGTTTTCCAGGGATGTATGCGGCTCATCCGGACGGACGGCGCTTTAGTGGATCTTATCAAAGTGCAGCAGATGTTGTTGGGGAATTTCAGCGATCTGCAGATGGACGTGTGTGGGATAGTCGACAGATGCTCCCCGAACCATTGTGAACACGGAGGGAAATGCTCGCAGTCATGGAGCACGTTTCACTGCAACTGCTCTGCCACAGGCTACAGCGGAGCGACCTGCCACAGCTCCATTTACGAAGCATCGTGTGAGGCCTACAAACACAAAGGAAACACTTCTGGCTTTTACTACATCGACGTGGATGGAAGCGGCCCCATCAAACCTCAGCTAATCTACTGCAACATGTCAGataaAGCCTGGATGGTGATCCAGCATAATAACACGGAGCTCACCAAATTAAAAACATCCTCTGGGATAAATCAGCACTTGGCCCATTTTAACTATTCGGCGGACGCGGAGCAGATCCGGGCCGTCATCAGCCAATCCGAACACTGCGAGCAGGAGCTGTCCTACCACTGCAGAAAGTCCCGGCTCCTGAACACTCCAGACGGTGCCCCCTTCAGCTGGTGGGTGGGTGGCTCTGGTGAAGCACACATGTACTGGGGTGGAGCAGTGCCCGGCAGTCAGCAGTGCGCCTGTGGTCTGCAGGGGAACTGTGTGCATCCAGAACACTTCTGCAACTGTGACGCCGACAGCAAAGACTGgtccAATGACTCTGGTTTGCTAGCTCATAAAGAGCATTTGCCGGTGCAATCGCTGGCGCTGGGAGACATCAGCCGCTCGGGGTCTGAAGCGGCGTATAGAGTCGGCCCACTGCAGTGCTACGGTGACGGTAACTTCTGGAACACTGCCTACTTCAACAAGGAGACGTCATACCTGCACTTTCCCACCTTCCATGGGGAGCTGAGCGCAGACATCTCCTTCCTGTTCAAAACCAGCTCTTCATCAGGAGTGTTCCTGGAGAATCTGGGCTTCAAAGACTTCATCCGCATCGAGCTGAGCTCGCCAACTGAGGTGGTGTTCTCCTTTGACGTGGGCAACGGTCCGCTGGACGTGCGAGTGCAGACGCCGAGCGCATTAAACGACGAGCGCTGGCATCACGTCAGAGCCGAACGCAACGTGAAGGAGGCCTCACTGTGTGTGGACCAGCATCCGGCTGCCGTGCAGAAAGCCCCCGCTGACGGACACATCCATCTGCAGCTCAACAGCCAGCTGTTCGTAGGAGGAACGGCGTCCAGGCAGAAGGGCTTTCTGGGCTGCATCCGCTCTCTGAAGCTGAACGGCAGGACTCTGGATCTGGAGGAGAGGGCTGCGATCACGCCTGGAGTGAGTGCTGGATGTCCCGGTCACTGCAGCAGCTACGGTGGCCTGTGTCTAAATCACGGCTCCTGTGTGGAAAAATACAGCGGCTTCACCTGCGACTGCAGCCTCTCGCCCTTCACTGGAACCTTCTGTCATAAAGAACTTTCTGCCTTCTTCAAACCGGGAACATCAGTGACGTACACATTTAAGGAGCCGTACGAGCTGAACAGGAACATCAGCGCACAGTCGTCCTCCATCTACTCTGATTTAACGCTGAGAGGAGAGAATATTTCACTGAGCTTCAGGACGAGTCAAGCTCCGGCGCTGCTGCTTTACGTCAACTCCTACTACAGAGAATACCTGTCCATCCTGCTCAACAGAAACGGACATTTGGACGTCAAGTACAAACTGGCCCACAGCAGAGAGGCCGAGGTTTTTCGAGCCAGCGGCAGGAATCTGGCCAACGGGCAGCTCCACAGAGTCAGCGTCCAGAGACTGGCAGAGACGCTCAGCATTCAGGTTGATCAGCATGAGAAGGAAGAGTTCAATCTCACGTCAGACACTGAATTCAACGCCATCAAATCGATCGTCATTGGAAAAGTGCTTGACTCTGGTGAAGTGGATCCAGAGATCGGTCGTCTGAATGCTCTGGGCTTCACCGGCTGTCTGTCTGTGGTCCAGTTTAACTCCATCTCTCCGCTGAAGGCAGCTTTACTGTATCCCGACACCAGTCCTGTCATAGTCACCGGATCGCTGAGCGAATCCGGCTGCGGATCGTCTTTATTGTCCAACCCTCACGCAGCGGAGACCACTCACTCCCTCACAGATCATGTGGGTACAGTAGGTACGGGCGAGCCCATAGTCAATGCCATCAACGGTGACTCTGCACTCATCGGAGGAGTGATCGCGGTGGTGATCTTCGTCAGTCTCTCAGCTCTGGCGGTAACAGCGAGATTTCTCTACCGACGGAAAGAAACCTTTCAAAGCCAGGAGCCCAAAGCTGGAAAAACTGACGACAGTCCTGAAACGCCATTCAACACGGATCCAAACTCACAGAGCATCATCAGCGATAACCAAAAAGAATACTTCATATGA

Function

symbol description
cntnap3 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including CNTNAP4 (contactin associated protein family member 4).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091113-51 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including CNTNAP4 (contactin associated protein family member 4).

Ensembl:

ensembl_id ENSDARG00000067824

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003605 False 821 processed_transcript 0.50 5 2175583 2267357
TCONS_00003606 False 3747 mRNA 0.54 24 2232023 2393791
TCONS_00003607 True 3814 mRNA 0.55 23 2234283 2393791

Neighbor

gene id symbol gene type direction distance location
XLOC_001804 NA coding upstream 184115 1966857 ~ 1991468 (+)
XLOC_001803 NA coding upstream 254563 1904355 ~ 1921020 (+)
XLOC_001802 C3AR1 coding upstream 274921 1899595 ~ 1900662 (+)
XLOC_001801 apc coding upstream 282488 1849874 ~ 1893095 (+)
XLOC_001799 NA coding upstream 462348 1698065 ~ 1713235 (+)
XLOC_001806 NA coding downstream 8517 2402308 ~ 2437908 (+)
XLOC_001807 NA coding downstream 105742 2499533 ~ 2504042 (+)
XLOC_001808 zmp:0000001301 coding downstream 135246 2529037 ~ 2550378 (+)
XLOC_001809 spina coding downstream 175002 2568793 ~ 2575387 (+)
XLOC_001810 nxnl2 coding downstream 188463 2582254 ~ 2585625 (+)
XLOC_001800 NA non-coding upstream 462813 1703905 ~ 1712770 (+)
XLOC_001797 CU929183.1 non-coding upstream 510545 1664922 ~ 1665038 (+)
XLOC_001815 FP085363.1 non-coding downstream 294774 2688565 ~ 2688681 (+)
XLOC_001823 NA non-coding downstream 583744 2977535 ~ 2979504 (+)
XLOC_001827 NA non-coding downstream 868787 3262578 ~ 3269818 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000178_00511893_00586668 NA coding CI01000178 null 511893 ~ 587038 (+)