XLOC_001806


Basic Information

Item Value
gene id XLOC_001806
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2402308 ~ 2437908 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005807
AAAATGCAAAGCAGCACGCTCCAATTTACCCCCTCAATATTTTGCACATAATCAAGTGTATCAGCAATTAAATGCACACATTATCGTGACCTTGGCATGGCGGATGATGATAACACGCGCGCGGGGCGGAAGGATATTCGGAGCTCGCAGTGACCGACTGGGGCCTGATTACCGGCGCGTCACAGCTCTTAACGCTTCTAATCAGGCTACATGTTTTATTCAGATTCACCACTGATGTGCGGCTCTACACTTAATTTGCGACGATGATGATGGCGATAGGATATGCGCTCGACTCAAATTAAAGGCTGTTTCACGGCAACTCCGACTTTAGGATCGTTTATGGACGCTGATTTGCAGGTCCCATCAGCACAGAGATGATGTTTTAGAGGAGCACGTGGCGTCTTTCAACCAAAGCAGGGCATCTATAACTTATTTAGGTCCTTGAACAGCCTTAAAAGAGACATACAGGATAAGAAGCACACCCAAAGGTCATCTAACCACcacatttatgtattaattatgcAACTTTCAATATCACGCCTAAGATACATGAGATATTACAGAATTTTCAAGTATAttccatacatttattttaaattaacatgCAGCAAATGGAAACTGAACCCATTAAcgttatttatgaaaaataatgcaaaaagtgAATTGAAACATATGATTCTGTCCCtattgttaaactttttaaaccaCTAGCAAAGTTTGCGTTtatccttcgtggcgtagattcaataaggtactgggaatttcctctgagattttgctccatattgtcatgatagcatcacacagttgctgcagatttgtcggctgcacatccatcatGCGAATCTCCCAATCatcacatcccaaatgtgctctattggattgaggtctggtgactgtggaggccatttgagtgcagtgaactcattgtcatgttcaagaaaccagtctggattctgaaacactcagattacactttcccattctgatgctcggtatgaacttcagcagatcctcttgaccatgcctaaatgcattgagttgctgccatgtgattggctgttcagaaatttgcgttaacaagcagttggacaggtgtacctaataaagtggccggtaattgCATATTGTATTATTGAAAGataatatattacagaaaattgaTGTTTCATGTAAGTTTTTATTTAACTTAGTATAGTAAACACACCAGAGTATGAAAATTACACTTGAATGTATAATTCTGGAGACAGAGACAGTCAAAAATAAGTCTAGTGGGAGTCCTTAAGTTGATACTTTTAAGACAAAATGTCTCTAAATCCACataaaacattctttttttttagagatgACTTGATATGATTTGTGTTGTTATTATTCACAACTGCTTCATTAACATTTTTAGGGTATAATAGAAGGTTTATTTTGGAGACTCAAAATGTACCCACAATTCTAGAATCACCAACATGTTACAGTATATATTTGTAATAGTTCCTACGACCTAATTCTCCCTTAAAATACTCCCTACACAAGCAGCGCACTGGAGTTAATTATCTCCCCCACACAGACAGTAAGCATCGTAGAGCTTCGTCGTGCTCTCGCTGATGTCCTGAATgtcacacagaaaaaaataaataaataaaaaaggaaaggaaTGGAGGAGTTTTATTGCTGCAGGTCCAACATAAATCTGGCTCGGCTAAACTCTGGAATCAACATAAGCGATTACCCAGCACTTGACTGAGAAGATAGAGACTCGTCATGTATCCCCAGGGTTTAGTGAGGCTAAACTGTTTGAAGCATCTCAAAGAAATTACATACAACTTCACAGCTCAAAGCCATGTCTTAAATCATGGAACCACAATACTTGCAGAAAAGCAGCACAATGACATTACATTGTTTTTATGCATACTCCATGGTAATACCTTGCTATTCCTATTAGTAGAATAGGAATTTAATCAgtgtattgttagtttttttgtcaCGTGACTTGTGTGGAGACCTGGCAGGCTAAAAACAAAGGGTTGCAGTAGCAGCTACACTGGGATCGCAATAGAAGCGCAGCACAATCCAGTCATATTTTCAAAATACCAATATTTGATCAACAGAATaaaaccgagatatgatcacaaagaGTCAATTGTGGGCACTTGCAATCCATATTCTGCACTTGCGGTCATTTTTAGTCACTTATAATAGTCACGTGCCTGTCAGAGCTACAATTGGTGACGTTTACATCTGTCTGGTGGATATTCCTGAG
>TCONS_00005808
AAAATGCAAAGCAGCACGCTCCAATTTACCCCCTCAATATTTTGCACATAATCAAGTGTATCAGCAATTAAATGCACACATTATCGTGACCTTGGCATGGCGGATGATGATAACACGCGCGCGGGGCGGAAGGATATTCGGAGCTCGCAGTGACCGACTGGGGCCTGATTACCGGCGCGTCACAGCTCTTAACGCTTCTAATCAGGCTACATGTTTTATTCAGATTCACCACTGATGTGCGGCTCTACACTTAATTTGCGACGATGATGATGGCGATAGGATATGCGCTCGACTCAAATTAAAGGCTGTTTCACGGCAACTCCGACTTTAGGATCGTTTATGGACGCTGATTTGCAGGTCCCATCAGCACAGAGATGATGTTTTAGAGGAGCACGTGGCGTCTTTCAACCAAAGCAGGGCATCTATAACTTATTTAGGTCCTTGAACAGCCTTAAAAGAGACATACAGGATAAGAAGCACACCCAAAGTGTTGATGCGGGGCGGACTGGAGAAACTGGCACAGGTTCTGCGATGACTTTGGCTTCTCTAATTGGATTTCCTGTTGCCGGTGACGAGCTCACAGGCCTGGATGGACGCCAGTCGACTGCATCTGGGTTCGGTCCTTCAAGCTTCAGCGGTTCACTGATTCTCATTCATTACCCTGGCGTGTGAAAGCGCTCCTCAGAATAGGGAAATTGGAAGAAGAAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005807 False 2257 lncRNA 0.39 2 2402308 2404778
TCONS_00005808 True 709 lncRNA 0.49 3 2402308 2437908

Neighbor

gene id symbol gene type direction distance location
XLOC_001805 cntnap3 coding upstream 8517 2175583 ~ 2393791 (+)
XLOC_001804 NA coding upstream 410840 1966857 ~ 1991468 (+)
XLOC_001803 NA coding upstream 481288 1904355 ~ 1921020 (+)
XLOC_001802 C3AR1 coding upstream 501646 1899595 ~ 1900662 (+)
XLOC_001801 apc coding upstream 509213 1849874 ~ 1893095 (+)
XLOC_001807 NA coding downstream 61625 2499533 ~ 2504042 (+)
XLOC_001808 zmp:0000001301 coding downstream 91129 2529037 ~ 2550378 (+)
XLOC_001809 spina coding downstream 130885 2568793 ~ 2575387 (+)
XLOC_001810 nxnl2 coding downstream 144346 2582254 ~ 2585625 (+)
XLOC_001811 wu:fb59d01 coding downstream 149326 2587234 ~ 2595731 (+)
XLOC_001799 NA non-coding upstream 689073 1698065 ~ 1713235 (+)
XLOC_001800 NA non-coding upstream 689538 1703905 ~ 1712770 (+)
XLOC_001797 CU929183.1 non-coding upstream 737270 1664922 ~ 1665038 (+)
XLOC_001815 FP085363.1 non-coding downstream 250657 2688565 ~ 2688681 (+)
XLOC_001823 NA non-coding downstream 539627 2977535 ~ 2979504 (+)
XLOC_001827 NA non-coding downstream 824670 3262578 ~ 3269818 (+)
XLOC_001830 CU570980.1 non-coding downstream 970875 3408783 ~ 3408900 (+)

Expression


Co-expression Network