XLOC_001810 (nxnl2)


Basic Information

Item Value
gene id XLOC_001810
gene name nxnl2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2582254 ~ 2585625 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003611
ACCACAGTAGGAAGCGGTTTGTAAATACGCGTCCCCTCAGCCAGAAGCGGTCAGAAGAAGAATCTCAGGATAATCTTTACACGTACTTCAGACAACTTTTTACGACACAAAACGATACCTTAGGGAACGTAAAAAGCAACCGAGAGCCTCCAGCGATGGTCGAGGTGTTTTCAGGCCGGACGCTGGTGAATAAAGAGGGGGATTTGGTGGAGCCGGAGGAGGCGCTCCGCAATAAGGTGGTGGGTCTGTATTTCTCCGCCGGCTGGTGTCCGCCCTGCAGGGACTTCACTCCGCTGCTCTGCGACTTTTACACGGAGCTGGTGGAGGAGACTGAACCGCCAGCACAGTTCGAGATCGTCTTCATATCCTCAGATAAATCCACCGAGGACATGGTGGAGTATTATCACGACATGCACGGAGACTGGCTGGCGTTACCCTGGACAGACCCATACAAACATGAACTGAAGAAGAGGTACAACATCACAGCCGTCCCAAAGCTGGTGATTGTGAAGGAGAATGGTCAGGTCATCACTGACAAGGGCCGAAAGCAGATCCGGGATCAGGGGCTGGCCTGCTTCAGGAGCTGGATCGAGGTGGCAGAGATCTTCCAGAACTTTAAAGGCTAGAAATCAGGACGAAAATGCTGCTCTCCGTTTACAAGGGCTCTTTCTATTTTATGCAACAAGCTTTAAACCAGTCTATTTAGGTTAACAGTCCACATGACTAGTCATATCAACAATGCGTTGGTTTGACTTGCTTGTATGTGTTGTGGTAGTGAAACAGAACAtttttgacaggtagtgtatatttaagggtgaactatccctttaaataaataaataaatctgaattgtacgtgcgtgtgtgtgtgtgtgtgcagcaggtGTTTACTAGATCTGTTGTTATGGATCATCAAAATGCCTCTTGTTCCTCCGTGTCTCATTAAAACTCACAGATCCTCC

Function

symbol description
nxnl2 Predicted to act upstream of or within photoreceptor cell maintenance and sensory perception. Is expressed in olfactory placode and peripheral olfactory organ. Orthologous to human NXNL2 (nucleoredoxin like 2).

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0045494 photoreceptor cell maintenance biological_process
GO:0007600 sensory perception biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-041212-55 Predicted to act upstream of or within photoreceptor cell maintenance and sensory perception. Is expressed in olfactory placode and peripheral olfactory organ. Orthologous to human NXNL2 (nucleoredoxin like 2).

Ensembl:

ensembl_id ENSDARG00000003934

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003611 True 962 mRNA 0.48 3 2582254 2585625

Neighbor

gene id symbol gene type direction distance location
XLOC_001809 spina coding upstream 6867 2568793 ~ 2575387 (+)
XLOC_001808 zmp:0000001301 coding upstream 31876 2529037 ~ 2550378 (+)
XLOC_001807 NA coding upstream 78212 2499533 ~ 2504042 (+)
XLOC_001806 NA coding upstream 144346 2402308 ~ 2437908 (+)
XLOC_001805 cntnap3 coding upstream 188463 2175583 ~ 2393791 (+)
XLOC_001811 wu:fb59d01 coding downstream 1609 2587234 ~ 2595731 (+)
XLOC_001812 CU856539.2 coding downstream 15205 2600830 ~ 2667208 (+)
XLOC_001813 ccl27b coding downstream 83780 2669405 ~ 2671295 (+)
XLOC_001814 setd9 coding downstream 99333 2684958 ~ 2691375 (+)
XLOC_001815 FP085363.1 coding downstream 102940 2688565 ~ 2688681 (+)
XLOC_001804 NA non-coding upstream 590786 1966857 ~ 1991468 (+)
XLOC_001803 NA non-coding upstream 661234 1904355 ~ 1921020 (+)
XLOC_001800 NA non-coding upstream 869484 1703905 ~ 1712770 (+)
XLOC_001823 NA non-coding downstream 391910 2977535 ~ 2979504 (+)
XLOC_001827 NA non-coding downstream 676953 3262578 ~ 3269818 (+)
XLOC_001830 CU570980.1 non-coding downstream 823158 3408783 ~ 3408900 (+)
XLOC_001834 NA non-coding downstream 1271442 3857067 ~ 3857885 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000178_00699229_00701221 NXNL2 coding CI01000178 null 698062 ~ 702541 (+)