XLOC_018127 (zgc:153157)


Basic Information

Item Value
gene id XLOC_018127
gene name zgc:153157
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 27732578 ~ 27733791 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035732
ATTTTCCATCGGTCCCTTCACCGCAAAACACAGATGTTCTCTATATGTCCTTTCACATGTCATTCTGCACATCAATCGCATCTCAGCTCTGCGTTTGCTTATTGCGTCAATACCCACTGGTCACCCAGGCGCTGTGGACGCGTACTGCTTGAATAAGCTCCACTCGCCGCTGTCATGCTGAAAACACACTGCTCCTGTGGATTTGCAAAATTGGAggaatgatgaatgaataaaacacagcGTGGATACCCGACAAACGCTGTGTAAACCGTCAGCAGTTTTCTTCAATCAGCCGTCAATAACAAGCGTTCAAGACGGACGGCGTACAGGAGCACAGAGGGAGAATCCGCGCCAACATGAGGGAACGGGACTTTATGCCAAACATGGAAAGGGGCAAACCGGCGACATACACAGGAGACAAAAAAGCTAAAATGGCTGCTAAAACCAATAAAAAGTGGGTGAGACTGGCTACTGTTTTCGCATATGTCTTGTCGGTGTCGTTGGCTGCTATAATACTGGCTATTTATTACAGTTTGATATGGAAACCAACGTCTGCTTCAGTGTCTGGACGGTCCGATGTTTTGATGACGACTACAGTTATGGCTATAAACACAAGTAACATCTCAGTAAGTGACGTGTCTACTAAGGTGAATAATACATCACTGGTTAGCCCGAAATCAACACAAACAACATATGACCTGTCCACTTCTCAAATGCATTGGGGTGATAAAAAAGGTCATGAAGGCCTTATTGATATCCCCACAACAAAAATGAAGAAAACCGACCAAGCAGGGACATCTGCCTCAACACACATTCAAAGAAAATCAGGACTTTTCAGTACAGCAGAAGTTAGCCATGTGTTGAAAACTAGTGTTCTAGTAGCAGGTGAGTCAAGTGAGGCTTTGTTGGCACGTGGAGCCACATCATCTTCCAAACAAACCGTCTATGGCAGTTCTGGATATGATGCCAGTAAGAATTGGGGTTTAGTCTCTCCCACAACTGACCAGGCATCCTGGACAAGCTACAGTGCAGGACCTGACGTCTCCTCTTTGACAGAACGTGGTCTGGACTTAATGGAGGGCTCGTCTGCGTTGCAGGAGGAGTTGGTTACCAAGGACACAGAGAATCCAATTGGTGTGTGACACCAGATTGTTTGTGTGGCATGTAATTATATGACATTAGAGGCGATGACTGggcagagaagaaaaaaaaaa

Function

symbol description
zgc:153157 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005246 calcium channel regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-224 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000070423

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035732 True 1214 mRNA 0.45 1 27732578 27733791

Neighbor

gene id symbol gene type direction distance location
XLOC_018126 zbtb25 coding downstream 20608 27707766 ~ 27711970 (-)
XLOC_018125 prph2lb coding downstream 342320 27384138 ~ 27390258 (-)
XLOC_018124 serpina10a coding downstream 350887 27371394 ~ 27381691 (-)
XLOC_018123 asb2a.1 coding downstream 402195 27316678 ~ 27330383 (-)
XLOC_018122 asb2a.1 coding downstream 420903 27295701 ~ 27311675 (-)
XLOC_018128 syndig1l coding upstream 88253 27822044 ~ 27864964 (-)
XLOC_018129 NA coding upstream 380973 28114764 ~ 28164152 (-)
XLOC_018130 NA coding upstream 499486 28233277 ~ 28233592 (-)
XLOC_018131 ino80 coding upstream 532536 28266327 ~ 28352352 (-)
XLOC_018132 vps18 coding upstream 620478 28354269 ~ 28361574 (-)
XLOC_017928 CU539064.1 misc downstream 17678877 10053405 ~ 10053701 (-)
XLOC_018118 BX248515.3 non-coding downstream 678358 27054095 ~ 27054220 (-)
XLOC_018116 BX248515.2 non-coding downstream 769822 26959533 ~ 26962756 (-)
XLOC_018112 NA non-coding downstream 1024052 26631070 ~ 26708526 (-)
XLOC_018107 NA non-coding downstream 1274197 26445903 ~ 26458381 (-)
XLOC_018103 BX470119.2 non-coding downstream 1537737 26194726 ~ 26194841 (-)
XLOC_018136 BX569801.1 non-coding upstream 877481 28611272 ~ 28612322 (-)
XLOC_018140 NA non-coding upstream 1126651 28860442 ~ 28863882 (-)
XLOC_018147 NA non-coding upstream 1693147 29426938 ~ 29429462 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_05991862_05992674 INAFM2 coding CI01000325 null 5990127 ~ 5992733 (-)