XLOC_001813 (ccl27b)


Basic Information

Item Value
gene id XLOC_001813
gene name ccl27b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2669405 ~ 2671295 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003614
GATGGATCTCATTGTGTTGGGGATTTTACTGTGCATCGCCTTCAGCGGCGCTCAAGGCGTCACACCGAGATGTTGTGTTGAAACTACAAAAAGGTTTCCACTCGATCTACTGAAGAAAGTCAATAGATATGAGGTGCAGACAAGCAGTGGAGCGTGCACTATTGATGCTCTTGTATTGCATGTGGGTGACATGAGATACTGCGCAACACCCAAGATGGAGCAGTTTCTGCAGAAGCTGATGAAGCGAATGGCTCGTCTAAAAGCCTCTGCTGTGTGAATGAGCTCAGGTGATGTCAAGAGGAGCAAACACTTCACTATAAAGATGTTTAAGGAAACACTTACTCTGTTCTTC

Function

symbol description
ccl27b Predicted to enable chemokine activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular space. Orthologous to human CCL27 (C-C motif chemokine ligand 27).

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005576 extracellular region cellular_component
GO:0008009 chemokine activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-140714-1 Predicted to enable chemokine activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular space. Orthologous to human CCL27 (C-C motif chemokine ligand 27).

Ensembl:

ensembl_id ENSDARG00000079713

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003614 True 352 mRNA 0.46 3 2669405 2671295

Neighbor

gene id symbol gene type direction distance location
XLOC_001812 CU856539.2 coding upstream 2197 2600830 ~ 2667208 (+)
XLOC_001811 wu:fb59d01 coding upstream 73674 2587234 ~ 2595731 (+)
XLOC_001810 nxnl2 coding upstream 83780 2582254 ~ 2585625 (+)
XLOC_001809 spina coding upstream 94018 2568793 ~ 2575387 (+)
XLOC_001808 zmp:0000001301 coding upstream 119027 2529037 ~ 2550378 (+)
XLOC_001814 setd9 coding downstream 13663 2684958 ~ 2691375 (+)
XLOC_001815 FP085363.1 coding downstream 17270 2688565 ~ 2688681 (+)
XLOC_001816 grk5 coding downstream 44253 2715548 ~ 2755378 (+)
XLOC_001817 pnx coding downstream 127990 2799285 ~ 2801857 (+)
XLOC_001818 aebp1 coding downstream 135841 2807136 ~ 2838190 (+)
XLOC_001807 NA non-coding upstream 165363 2499533 ~ 2504042 (+)
XLOC_001806 NA non-coding upstream 231497 2402308 ~ 2437908 (+)
XLOC_001804 NA non-coding upstream 677937 1966857 ~ 1991468 (+)
XLOC_001803 NA non-coding upstream 748385 1904355 ~ 1921020 (+)
XLOC_001800 NA non-coding upstream 956635 1703905 ~ 1712770 (+)
XLOC_001823 NA non-coding downstream 306240 2977535 ~ 2979504 (+)
XLOC_001827 NA non-coding downstream 591283 3262578 ~ 3269818 (+)
XLOC_001830 CU570980.1 non-coding downstream 737488 3408783 ~ 3408900 (+)
XLOC_001834 NA non-coding downstream 1185772 3857067 ~ 3857885 (+)

Expression


Co-expression Network