XLOC_018145 (chrm5b)


Basic Information

Item Value
gene id XLOC_018145
gene name chrm5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 29228337 ~ 29229854 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035771
ATGGACATGGATATAAAAAACATTACTGTGAGGGGAAATGTATCTGCCATCCCGCCTGACCCATACAGTCTGCTGGAGGTCATAACCATTGCCACAGTATCAGCCATTGTGAGTCTCATCACAATAGTGGGGAACGTTTTAGTGATGCTCTCCTTCAAAGTCAACAGCCAACTGAAGACCGTCAACAATTACTACTTACTCAGTTTAGCTTTCGCAGACCTGATTATCGGTGTGTTCTCTATGAACCTCTACACGTGCTACATTCTCATGGGATACTGGTCTTTAGGGAATACAGCATGTGATCTGTGGTTGGCACTTGATTACGTTGCAAGCAATGCATCAGTGATGAACTTGCTGGTCATCAGCTTTGATAGATACTTCTCCATTACAAGGCCGCTTACCTACAGGGCTAAACGAACCCCGAAGCGGGCAGGGATCATGATTGGCATGGCCTGGTTGATATCGTTTATATTGTGGGCTCCACCCATTCTGTGCTGGCAGTACTTTGTTGGAGAGAGGAAAGTTCCTCTTGACCAGTGCCAAATCCAGTTTTTCTCAGAACCCATAATTACATTTGGGACAGCCATAGCGGCCTTTTATGTCCCAGTATCCATCATGACCATACTATATTGCAAAATCTACAAAGAAACAGAAAAACGCACTAAGAATTTAGCAGAACTTCAGGGATATCCATCGCTGGACAGCCAGGACGGCCCTAAAGTACGAAAACCAATCCTTCGATGCTTTAGCTTTAAAAACAAGAGAGACGGGACTCAAGCATCATGGTCTTCGTCCAACCAGAGTTACGTAACTCGGACAACATTGCAGTCTGATGACTTGTGGACAAAATCTGAGCAGGTCACCACCCTGAACAGTTACACCTCATCCGAGGACGATGACCGGTCAGTCTCAGAGTCAACGCCGAGAGAATCCTTCAAGAACCAGGAACCACCAGTAAGTAAGAACGGACAGCTGGTCTGCTATGAAGATAGCAAATATCTAAGTGATCTTGCAAAATGCTCACAAACGAACAATAAAAAGTGCTTGTCATACAAATTCAAGCCAATCATTAGCGACATCACTGTTTTGCAAGGTAATAGTGAGAGTGAGAGAGCAAACCCGGATCAGTCCTCAGACCAACAGGCTCCTTCCTCCACATCCTCTTCTACCAAACCAGAAGACCCAAACCTTAAGATCCAGATGACCAAACGTAAAAGAATGGTTCTCATCAAGGAGAAGAAAGCAGCTCAGACTCTTAGTGCCATCCTTCTAGCCTTTCTTCTTACTTGGACACCATACAACATCATGGTGCTCATCTCCACCTTCTGTTCCAACTGCATCCCAACATCCCTCTGGCAGCTGGGCTACTGGCTCTGCTACGTCAACAGCACCGTCAACCCCATGTGCTACGCCTTATGCAACAAGACCTTCCAGAAGACCTTTTGGATGTTAATCCTCTGCAAGTGGAAGAAGAATAGGGGAGAGGAGAAGCTGTACTGGGGTGGTCAAAACCATTAA

Function

symbol description
chrm5b Predicted to enable G protein-coupled acetylcholine receptor activity and G protein-coupled serotonin receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting G protein-coupled acetylcholine receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite and synapse. Predicted to be integral component of plasma membrane. Is expressed in eye. Orthologous to human CHRM5 (cholinergic receptor muscarinic 5).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007187 G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger biological_process
GO:0007197 adenylate cyclase-inhibiting G protein-coupled acetylcholine receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007165 signal transduction biological_process
GO:0030425 dendrite cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0016907 G protein-coupled acetylcholine receptor activity molecular_function
GO:0004993 G protein-coupled serotonin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-169 Predicted to enable G protein-coupled acetylcholine receptor activity and G protein-coupled serotonin receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting G protein-coupled acetylcholine receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite and synapse. Predicted to be integral component of plasma membrane. Is expressed in eye. Orthologous to human CHRM5 (cholinergic receptor muscarinic 5).

Ensembl:

ensembl_id ENSDARG00000069598

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035771 True 1518 mRNA 0.46 1 29228337 29229854

Neighbor

gene id symbol gene type direction distance location
XLOC_018144 thbs1b coding downstream 175946 29036328 ~ 29052391 (-)
XLOC_018143 acot21 coding downstream 272034 28946709 ~ 28956303 (-)
XLOC_018142 susd6 coding downstream 296299 28885990 ~ 28932038 (-)
XLOC_018141 srsf5b coding downstream 343508 28869969 ~ 28884829 (-)
XLOC_018140 NA coding downstream 364455 28860442 ~ 28863882 (-)
XLOC_018146 ryr3 coding upstream 38590 29268444 ~ 29420713 (-)
XLOC_018147 NA coding upstream 197084 29426938 ~ 29429462 (-)
XLOC_018148 grem1a coding upstream 239899 29469753 ~ 29475172 (-)
XLOC_018149 actc1a coding upstream 246998 29476852 ~ 29483514 (-)
XLOC_018150 rrm2 coding upstream 262615 29492469 ~ 29499426 (-)
XLOC_017928 CU539064.1 misc downstream 19174636 10053405 ~ 10053701 (-)
XLOC_018136 BX569801.1 non-coding downstream 616015 28611272 ~ 28612322 (-)
XLOC_018130 NA non-coding downstream 994745 28233277 ~ 28233592 (-)
XLOC_018129 NA non-coding downstream 1064185 28114764 ~ 28164152 (-)
XLOC_018118 BX248515.3 non-coding downstream 2174117 27054095 ~ 27054220 (-)
XLOC_018151 BX248136.1 non-coding upstream 265446 29495300 ~ 29495435 (-)
XLOC_018156 NA non-coding upstream 457781 29687635 ~ 29691465 (-)
XLOC_018158 NA non-coding upstream 560088 29789942 ~ 29834538 (-)
XLOC_018160 NA non-coding upstream 697331 29927185 ~ 29933758 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_06831162_06832685 CHRM5B coding CI01000325 null 6831125 ~ 6833510 (-)