XLOC_018159 (rnf144ab)


Basic Information

Item Value
gene id XLOC_018159
gene name rnf144ab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 29836276 ~ 29864530 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035803
CAGCAGCAACCGCGCGCGTCTCCAAGCGCAGTCAAATGGCGCCTCTCCAAACAGCCCGAGCGACCAGTCCGACCAGCTGATGTTAATTAGAGCATAAACCGCTTCTGTAACATAATCACCTCTTAATGTGATGTGATTCTGTGCGCTATGATATCACGATTTATCTGCTGCAAATGCGGACGTACAGGAGGACATTGCGCTCAGTTGTACGTGGAGCTGATGTTATTCCAGTAACGGATTGACTGTTACATACATTCATCCTAAGCGTCCCAGATCTGCATACCATGAGCAGCTCTCGCTACGAACCCAGTTGGGACGTGGACCTGGCACCTCTCCTGTCCTGTAAACTGTGCCTGGGAGAGTTTCCGCTGGAACAGATGACCACCATCTCCCAGTGCCAGTGCATATTTTGCAGTCTGTGTTTGAAGCAATATGTTGAACTGCTCATTAAAGAGGGCCTCGAAACGGCTATTAGCTGTCCAGATTCTACCTGCCCAAAACAAGGACATTTGCTGGAGAATGAGATTGAGTGTATGGTGGCTGGTGAGGTCATGCAACATTATAAGAGACTCCAGTTTGAGCGAGAGGTGCTTCTGGATCCCTGTCGAACCTGGTGCCCATCATCCTCATGCCAAGCAGTGTGCCAGCTGAATGAAGCAGAGGTGCAGCTGCCGCAGCCTGTGCAGTGCCCTGAGTGCAGTCTGCGCTTTTGCTCTGCCTGCAGGGCTGACTGTCACACTGGCCAGGCCTGTCAGGAGATGCTGCCAATTACCACTTTCCTGCCTGGGGAAAACGGCAGCTCCAACCTCAAGAGTCAGGAGGACGAGGCTCCGATCAAACGCTGTCCTAAATGTAAAGTGTACATTGAGAGGGATGAAGGCTGTGCTCAGATGATGTGCAAGAACTGCAAGCATGCCTTCTGCTGGTACTGCCTGGAGTCACTGGACGATGACTTTTTACTGATCCACTATGATAAAGGACCATGTCGAAACAAATTGGGTCATTCCAGAGCCTCCGTCATCTGGCATCGGACACAGGTTGTGGGGATCTTTGCTGGCTTTGGTCTGCTGTTGTTAGTGGCCTCCCCTTTCCTCTTGCTGGCCACTCCGTTCGTGCTCTGCTGCAAATGCAAGTGTAAACGAGGAGACGACGACCCCCTTCCTACCTAGAGCTCCATCCCAGCTTCAGGAGGTGACGCTCAGCTTGTCTGAAAGTGGATCAGCTGTGATCCCGTCGCACCTGCTTCTCCTGAGCACACTTTATACAGGGGCACTGGTGAAAAACACGGCTCATCTGCTCGGGAGACTGTACTTCTGAAAGTTTTGACTGGCATTGAaaggtgttttggaggagcggaGGAGCTGATTGGACGAGCCACTGGAGTTAATCAGACAAACAAACACTACAGTTACTTTATGACACTGTACAACTGTCTTTTTGTTACAAACTGTCTTGTATCTTTTCCGTTCTTTAGTGTTTCTTCACTTCATGTGTTAAGCTATTTTCAATGTTGTTTATTCTGGGTTAAAACAAAAGACATTCTACTGACTACAGTACATGTATGAGAGGAATACATTTATTAGCAGTGCTTTTACACTTTTCTTGTAGCATATTCACATAACCTCAATATTTCAGCCATTTCCTTCATCTAATTGCATATGCATGCTGGAGGCTGAGGTTGTTTGGCTTTCTGCACCTCAGTCTGCCACTAGCTTTTATATGCTTCCTATATGCTCCTACTTAGGACCGTTCTTCCATTTAAATCTACCCAATTACCAGACGTAGCAGGCGTGTCACCTGATGCCTTCTCAAAGCTTGTAGGCTTCGGTGTTGCTGAAAGAATTCTTATTATTACCATGGAAAACAACCGGTCTCATAGCAATCAGTTTAACACTAAGCTATCACAAATGGATCATTATTGTATGCTAATGTTGTAAGCACAACGTGAAAGGTGTCATTTAAAGAATAATTTTGTTGATGTAACGCATATGTTGGCTTTTGTTTGTATTTCCAACCAATGAGGGTCTTATTCGCAACCTGTTGAAGATCAAGATCCAACCTGCATTACCATGTGCCTGCCAATTTAGGTCAGAGTAATCAGGCCAGCGAGGCTTAACTTCTTACTTTTCAGGTCACTCATGgagttgtatttatttaattaatttattttggggGAGGAGTAATACTTTAGGGAAAATTTTGCCAAATGTGACTATTAAGCCCATGCGTCTAGCATATTAAGAGTTGGTTGAGGACTAGGGAACACCTAGTTTTTGTTCTTGTTTCTTCAGCTAAATATGCCTTTcgttttcatttatgtttttgtaactttttttaagtGTTGAAACTTTTTGTAGCTAACTGTATGTGATGTGTATCCACATTTTTCacgtttaaatatattattatgttgCAA
>TCONS_00035804
GTGCGCTATGATATCACGATTTATCTGCTGCAAATGCGGACGTACAGGAGGACATTGCGCTCAGTTGTACGTGGAGCTGATGTTATTCCAGTAACGGATTGACTGTTACATACATTCATCCTAAGCGTCCCAGATCTGCATACCATGAGCAGCTCTCGCTACGAACCCAGTTGGGACGTGGACCTGGCACCTCTCCTGTCCTGTAAACTGTGCCTGGGAGAGTTTCCGCTGGAACAGATGACCACCATCTCCCAGTGCCAGTGCATATTTTGCAGTCTGTGTTTGAAGCAATATGTTGAACTGCTCATTAAAGAGGGCCTCGAAACGGCTATTAGCTGTCCAGATTCTACCTGCCCAAAACAAGGACATTTGCTGGAGAATGAGATTGAGTGTATGGTGGCTGGTGAGGTCATGCAACATTATAAGAGACTCCAGTTTGAGCGAGAGGTGCTTCTGGATCCCTGTCGAACCTGGTGCCCATCATCCTCATGCCAAGCAGTGTGCCAGCTGAATGAAGCAGAGGTGCAGCTGCCGCAGCCTGTGCAGTGCCCTGAGTGCAGTCTGCGCTTTTGCTCTGCCTGCAGGGCTGACTGTCACACTGGCCAGGCCTGTCAGGAGATGCTGCCAATTACCACTTTCCTGCCTGGGGAAAACGGCTCCAACCTCAAGAGTCAGGAGGACGAGGCTCCGATCAAACGCTGTCCTAAATGTAAAGTGTACATTGAGAGGGATGAAGGCTGTGCTCAGATGATGTGCAAGAACTGCAAGCATGCCTTCTGCTGGTACTGCCTGGAGTCACTGGACGATGACTTTTTACTGATCCACTATGATAAAGGACCATGTCGAAACAAATTGGGTCATTCCAGAGCCTCCGTCATCTGGCATCGGACACAGGTTGTGGGGATCTTTGCTGGCTTTGGTCTGCTGTTGTTAGTGGCCTCCCCTTTCCTCTTGCTGGCCACTCCGTTCGTGCTCTGCTGCAAATGCAAGTGTAAACGAGGAGACGACGACCCCCTTCCTACCTAGAGCTCCATCCCAGCTTCAGGAGGTGACGCTCAGCTTGTCTGAAAGTGGATCAGCTGTGATCCCGTCGCACCTGCTTCTCCTGAGCACACTTTATACAGGGGCACTGGTGAAAAACACGGCTCATCTGCTCGGGAGACTGTACTTCTGAAAGTTTTGACTGGCATTGAaaggtgttttggaggagcggaGGAGCTGATTGGACGAGCCACTGGAGTTAATCAGACAAACAAACACTACAGTTACTTTATGACACTGTACAACTGTCTTTTTGTTACAAACTGTCTTGTATCTTTTCCGTTCTTTAGTGTTTCTTCACTTCATGTGTTAAGCTATTTTCAATGTTGTTTATTCTGGGTTAAAACAAAAGACATTCTACTGACTACAGTACATGTATGAGAGGAATACATTTATTAGCAGTGCTTTTACACTTTTCTTGTAGCATATTCACATAACCTCAATATTTCAGCCATTTCCTTCATCTAATTGCATATGCATGCTGGAGGCTGAGGTTGTTTGGCTTTCTGCACCTCAGTCTGCCACTAGCTTTTATATGCTTCCTATATGCTCCTACTTAGGACCGTTCTTCCATTTAAATCTACCCAATTACCAGACGTAGCAGGCGTGTCACCTGATGCCTTCTCAAAGCTTGTAGGCTTCGGTGTTGCTGAAAGAATTCTTATTATTACCATGGAAAACAACCGGTCTCATAGCAATCAGTTTAACACTAAGCTATCACAAATGGATCATTATTGTATGCTAATGTTGTAAGCACAACGTGAAAGGTGTCATTTAAAGAATAATTTTGTTGATGTAACGCATATGTTGGCTTTTGTTTGTATTTCCAACCAATGAGGGTCTTATTCGCAACCTGTTGAAGATCAAGATCCAACCTGCATTACCATGTGCCTGCCAATTTAGGTCAGAGTAATCAGGCCAGCGAGGCTTAACTTCTTACTTTTCAGGTCACTCATGgagttgtatttatttaattaatttattttggggGAGGAGTAATACTTTAGGGAAAATTTTGCCAAATGTGACTATTAAGCCCATGCGTCTAGCATATTAAGAGTTGGTTGAGGACTAGGGAACACCTAGTTTTTGTTCTTGTTTCTTCAGCTAAATATGCCTTTcgttttcatttatgtttttgtaactttttttaagtGTTGAAACTTTTTGTAGCTAACTGTATGTGATGTGTATCCACATTTTTCacgtttaaatatattattatgttgC

Function

symbol description
rnf144ab Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of ubiquitin ligase complex. Predicted to be active in Golgi apparatus. Orthologous to human RNF144A (ring finger protein 144A).

GO:

id name namespace
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0031624 ubiquitin conjugating enzyme binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-486 Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of ubiquitin ligase complex. Predicted to be active in Golgi apparatus. Orthologous to human RNF144A (ring finger protein 144A).

Ensembl:

ensembl_id ENSDARG00000042557

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035803 False 2416 mRNA 0.45 8 29836276 29864530
TCONS_00035804 True 2271 mRNA 0.45 8 29836278 29864390

Neighbor

gene id symbol gene type direction distance location
XLOC_018158 NA coding downstream 1738 29789942 ~ 29834538 (-)
XLOC_018157 id2b coding downstream 49066 29784927 ~ 29787210 (-)
XLOC_018156 NA coding downstream 144811 29687635 ~ 29691465 (-)
XLOC_018155 si:ch211-195d17.2 coding downstream 152493 29676874 ~ 29683783 (-)
XLOC_018154 cpsf3 coding downstream 202769 29619820 ~ 29633507 (-)
XLOC_018160 NA coding upstream 62655 29927185 ~ 29933758 (-)
XLOC_018161 sox11b coding upstream 168098 30032628 ~ 30035326 (-)
XLOC_018162 NA coding upstream 227729 30092259 ~ 30099019 (-)
XLOC_018163 NA coding upstream 258960 30123490 ~ 30258573 (-)
XLOC_018164 allc coding upstream 490906 30355436 ~ 30370927 (-)
XLOC_017928 CU539064.1 misc downstream 19782575 10053405 ~ 10053701 (-)
XLOC_018151 BX248136.1 non-coding downstream 340841 29495300 ~ 29495435 (-)
XLOC_018147 NA non-coding downstream 406814 29426938 ~ 29429462 (-)
XLOC_018140 NA non-coding downstream 972394 28860442 ~ 28863882 (-)
XLOC_018166 BX276180.4 non-coding upstream 508133 30372663 ~ 30372883 (-)
XLOC_018167 BX276180.2 non-coding upstream 508677 30373207 ~ 30373427 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_07195504_07200452 RNF144AA, RNF144AB, RNF144A coding CI01000325 null 7195347 ~ 7200452 (-)