XLOC_001818 (aebp1)


Basic Information

Item Value
gene id XLOC_001818
gene name aebp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2807136 ~ 2838190 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003620
TGTCAGAGGAATTCCTTTCCACTACAACAGCGGAAAACAGCCACAATCCCCCTTACATCTGACCTCCACACCAGCTTCATTTATTCCATCTCCAGCGCAGACCAAGAGTCTGCAAACATTCAGATCAACGACTTTTCATAGACCAGAGTGCTAGCTGACCGGTTTATGCACACACTTACCATCTCTGAACAGTAGCACTGGTGCAGAAGATCCCAGAAGACCATGAGGGTTTTAGTATGTGCAGCGTTATTTGCTCTATGCTGGATTTTGACATTTGCTATCAATGAAGAGTTGGCTAATGCTCCCAACCAGAGAACCAGAAGCATCCAAATGAGACAAAGCAATGGAGTTAAATCCAACAGAGATGATCTGCAGGAAGGGTTTTCAGAGGACACTCAGATGGACGAGCCTGGAGAAGAAATGGCTGAAAAGGAAAAACCAAAGGGTAAAAAGACACCAGAGGAGATCTTAGCTGCCAAGGCTAAGAAGGCGGCAGAGAAGGAAGCCAAAGCCAAGAAACCGAAGCCCACAAAAAAACCCAAACCAACAAAGAAACCAAAACCTCCAAAGGCCACCAAGAAGTCAAAGCCTCCAAAAGCCACCAAAAAGCCGAAAGCAGCGAAGCCAACAACACCAGCTAGAGAAACTAAACCGACCAAAAAGCCAACaatggaggaagaggaggagaaacTGCTGCTGGAGTTGGGATGGGACACATTGTCACCAAAGGAGACAGAAATGGAGAAACCCATTGGCCCAGATCATGACATGCACAGCAAGAAAGACCCCACAACACCTCCATCAGTCAAAGAGCATATGCCGGATAACTGGGACAGCCGACatgaaatccaagagcctGACCTCATTCCTAAAGTCAAGCAGCCGTCCTCCACCGATGACCCGAGTATATACTTACCAATCCCAGAGGAAGCCACTACCACCCCTCGAACAATCGCCCCTTGGTACGAGGAATATGATTATGCCGACTTGGCGGCAAAAAAGCAGGAGGAAGAGCTGGAAAAAGCAAGAAAGGCCAAAGAGGAGAAGGCAGAAAAACTGCGGAAGATGtgggaagaggaggaggaggaaaagaggAAGCAGACGGCTCTTCATGCCGAGCCAAAGAAGTGTCCTCCTCTTGGACTGGAGTCCCATCGAGTGGAGGATGATCAGATTCTGGCGTCTTCTTCATCTAATCTTGGTTATTCAGCTCTGAGAGGACGGCTCAACATGCAGAATTCGGCTGATGAGGAGGATGTTTACGGTGGAGCGTGGTGCGCTGATACGGAGGAGAAGGAGCACTGGTTTCAGGTGGACGGCCGACGAGAGGTGGAGTTTACCGGTGTAATCACACAGGGCAGAAACTCAGAGTCAAACAATGACTTTGTGTCCTCATTTTTCGTGGCCTTCAGTAACGACAGTCGTGAATGGACGGTTCTTCATGATGGTTATGCTGAGTGGCTCTTTTATGGGAATGTGGATAAAGACACTCCAGTAATGACGGAGTTCTCGTATCCGGTGGTTGCGCGGTACATCCGTGTGCTGCCGCAGAGCTGGAACGGGAGTCTGTGCATGAGGCTGGAGGTACTCGGCTGCCAGTTACCCACTAGTTATGCAACTGAGAATGACGTTCCACCAACAGATGATCTGGATTACAGGCATCACAACTATAAAGAGATGAGACAGATGATGAAGGTGATCAATGAGGAATGCCCTAATATCACCAGAATTTATAACATCGGGAAAAGCTTTCAAGGGCTGAAGATGTACGCCATGGAGATCTCAGACAACCCTGGAGAACACGAGCCAGGTGAACCAGAATTCAGGTACACGGCAGGGCTTCATGGGAACGAGGTGCTGGGCCGGGAGCTTCTGCTGCTCCTCATGCAGTTCATCTGCAAAGAATACAATGACGACAACCCGAGAGTGCACCGCCTGGTGGAAACGGTGCGAATTCATCTGGTGCCATCGCTAAACCCTGACGCCTATGAGCTGGCATACGAGATGGGATCTGAGATGGGAAACTGGGCTTTGGGACACTGGACAGAGGAGGGGTACGACATTTTCCAGAATTTCCCAGACCTGAACAGTGTTCTGTGGGGTGCGGAGGACAGAGGATGGGTGCCGCGGATCGTTCCCAATCACCACATTCCCATCCCTGAGAACTTTCTCAATGGCTCTGTGGCGACTGAAACTAAAGCCATCATCAGCTGGATGGAGAGGACGCCGTTTGTTTTAGGCGCGAATCTGCAGGGCGGAGAGAAGCTGGTGGCGTACCCATTCGACATGCAACGTCCACCGCGGGCCACGAGCACGGACGGACGGGTCGGTCAGCCGGTGCAGGAGTACCACAACATGAACGAGGAGACCTGGGCTCGGATTCAGCGGCAGAACGAAGGCGCTCTCCGCGAAACAGCGGATGAAAACCTGTTCCGGTGGCTCGCCACGACGTATGCACACAGTCACCTCACCTTGACGGAAAACCACCGCGGGTCCTGCCATACCGATGACATCACCGGCGGACAGGGCATCATCAACCGCGCCAGCTGGAAACCAGTTGTGGGCAGCATGAACGACTTCAGCTACCTGCACACCAACTGCTTCGAGATTTCCATCTTTCTTGGGTGCGATAAGTTTCCCCATGAGAGTGAATTGCCGTCGGAGTGGGAAAACAACCGTGAGGCGCTGCTGGCTTTCATCGAGCAGGTGCATCGAGGCATTAAAGGGGTTGTGAGAGACGTCGATGGGAATCTTCTGGCAAATGCCACAGTGTCAGTGGAGGGAATCAAACATGACGTCAAAACAGCTTCCACTGGTGATTACTGGCGTCTCCTCAACCCAGGCGAGTATCGCGTAACAGCGCGAGCGGATGGTTACTCCTCTCAGACGCGTCTTTGCATTGTCGGCTATGATGCCAACGCAACACCCTGCAGTTTCACCTTGACCAAATCTAACTGGGCTCGTATCCAGCAAATCTTGGCTCAAAGCGGAAAGAGACCAAGACTGGTTAACAACATCCCTCGAAACGCCAACAACCAAGTCAATGGTGGAAGCACAGGGCCCGCCGGTGGCTCCCAAAACGAACGTTTGAACCGCATACGACTGATGCGCATGAGGAAACTGCGGATGGAGAGGATGAAAAGCAGCACAACTACAGAAATGACCACCTCAACAACCACAACCACACCTGaacccacaacaacaacaacactgggGTCAACAAGTGAATCTTGGTATGACTGGTTTGAACAGGAGAGCTTTAACTTTGAGCACACAATAGATGAAGATTAGAGAAGAATCACCAgacgtttacatacactgtataaaaagccacataaccatttaaaaaagaaaagagatgttaatgtgactcaacgttttct
>TCONS_00003621
CCACAATCCCCCTTACATCTGACCTCCACACCAGCTTCATTTATTCCATCTCCAGCGCAGACCAAGAGTCTGCAAACATTCAGATCAACGACTTTTCATAGACCAGAGTGCTAGCTGACCGGTTTATGCACACACTTACCATCTCTGAACAGTAGCACTGGTGCAGAAGATCCCAGAAGACCATGAGGGTTTTAGTATGTGCAGCGTTATTTGCTCTATGCTGGATTTTGACATTTGCTATCAATGAAGAGTTGGCTAATGCTCCCAACCAGAGAACCAGAAGCATCCAAATGAGACAAAGCAATGGAGTTAAATCCAACAGAGATGATCTGCAGGAAGGGTTTTCAGAGGACACTCAGATGGACGAGCCTGGAGAAGAAATGGCTGAAAAGGAAAAACCAAAGGGTAAAAAGACACCAGAGGAGATCTTAGCTGCCAAGGCTAAGAAGGCGGCAGAGAAGGAAGCCAAAGCCAAGAAACCGAAGCCCACAAAAAAACCCAAACCAACAAAGAAACCAAAACCTCCAAAGGCCACCAAGAAGTCAAAGCCTCCAAAAGCCACCAAAAAGCCGAAAGCAGCGAAGCCAACAACACCAGCTAGAGAAACTAAACCGACCAAAAAGCCAACaatggaggaagaggaggagaaacTGCTGCTGGAGTTGGGATGGGACACATTGTCACCAAAGGAGACAGAAATGGAGAAACCCATTGGCCCAGATCATGACATGCACAGCAAGAAAGACCCCACAACACCTCCATCAGTCAAAGAGCATATGCCGGATAACTGGGACAGCCGACatgaaatccaagagcctGACCTCATTCCTAAAGTCAAGCAGCCGTCCTCCACCGATGACCCGAGTATATACTTACCAATCCCAGAGGAAGCCACTACCACCCCTCGAACAATCGCCCCTTGGTACGAGGAATATGATTATGCCGACTTGGCGGCAAAAAAGCAGGAGGAAGAGCTGGAAAAAGCAAGAAAGGCCAAAGAGGAGAAGGCAGAAAAACTGCGGAAGATGtgggaagaggaggaggaggaaaagaggAAGCAGACGGCTCTTCATGCCGAGCCAAAGAAGTGTCCTCCTCTTGGACTGGAGTCCCATCGAGTGGAGGATGATCAGATTCTGGCGTCTTCTTCATCTAATCTTGGTTATTCAGCTCTGAGAGGACGGCTCAACATGCAGAATTCGGCTGATGAGGAGGATGTTTACGGTGGAGCGTGGTGCGCTGATACGGAGGAGAAGGAGCACTGGTTTCAGGTGGACGGCCGACGAGAGGTGGAGTTTACCGGTGTAATCACACAGGGCAGAAACTCAGACAATGACTTTGTGTCCTCATTTTTCGTGGCCTTCAGTAACGACAGTCGTGAATGGACGGTTCTTCATGATGGTTATGCTGAGTGGCTCTTTTATGGGAATGTGGATAAAGACACTCCAGTAATGACGGAGTTCTCGTATCCGGTGGTTGCGCGGTACATCCGTGTGCTGCCGCAGAGCTGGAACGGGAGTCTGTGCATGAGGCTGGAGGTACTCGGCTGCCAGTTACCCACTAGTTATGCAACTGAGAATGACGTTCCACCAACAGATGATCTGGATTACAGGCATCACAACTATAAAGAGATGAGACAGATGATGAAGGTGATCAATGAGGAATGCCCTAATATCACCAGAATTTATAACATCGGGAAAAGCTTTCAAGGGCTGAAGATGTACGCCATGGAGATCTCAGACAACCCTGGAGAACACGAGCCAGGTGAACCAGAATTCAGGTACACGGCAGGGCTTCATGGGAACGAGGTGCTGGGCCGGGAGCTTCTGCTGCTCCTCATGCAGTTCATCTGCAAAGAATACAATGACGACAACCCGAGAGTGCACCGCCTGGTGGAAACGGTGCGAATTCATCTGGTGCCATCGCTAAACCCTGACGCCTATGAGCTGGCATACGAGATGGGATCTGAGATGGGAAACTGGGCTTTGGGACACTGGACAGAGGAGGGGTACGACATTTTCCAGAATTTCCCAGACCTGAACAGTGTTCTGTGGGGTGCGGAGGACAGAGGATGGGTGCCGCGGATCGTTCCCAATCACCACATTCCCATCCCTGAGAACTTTCTCAATGGCTCTGTGGCGACTGAAACTAAAGCCATCATCAGCTGGATGGAGAGGACGCCGTTTGTTTTAGGCGCGAATCTGCAGGGCGGAGAGAAGCTGGTGGCGTACCCATTCGACATGCAACGTCCACCGCGGGCCACGAGCACGGACGGACGGGTCGGTCAGCCGGTGCAGGAGTACCACAACATGAACGAGGAGACCTGGGCTCGGATTCAGCGGCAGAACGAAGGCGCTCTCCGCGAAACAGCGGATGAAAACCTGTTCCGGTGGCTCGCCACGACGTATGCACACAGTCACCTCACCTTGACGGAAAACCACCGCGGGTCCTGCCATACCGATGACATCACCGGCGGACAGGGCATCATCAACCGCGCCAGCTGGAAACCAGTTGTGGGCAGCATGAACGACTTCAGCTACCTGCACACCAACTGCTTCGAGATTTCCATCTTTCTTGGGTGCGATAAGTTTCCCCATGAGAGTGAATTGCCGTCGGAGTGGGAAAACAACCGTGAGGCGCTGCTGGCTTTCATCGAGCAGGTGCATCGAGGCATTAAAGGGGTTGTGAGAGACGTCGATGGGAATCTTCTGGCAAATGCCACAGTGTCAGTGGAGGGAATCAAACATGACGTCAAAACAGCTTCCACTGGTGATTACTGGCGTCTCCTCAACCCAGGCGAGTATCGCGTAACAGCGCGAGCGGATGGTTACTCCTCTCAGACGCGTCTTTGCATTGTCGGCTATGATGCCAACGCAACACCCTGCAGTTTCACCTTGACCAAATCTAACTGGGCTCGTATCCAGCAAATCTTGGCTCAAAGCGGAAAGAGACCAAGACTGGTTAACAACATCCCTCGAAACGCCAACAACCAAGTCAATGGTGGAAGCACAGGGCCCGCCGGTGGCTCCCAAAACGAACGTTTGAACCGCATACGACTGATGCGCATGAGGAAACTGCGGATGGAGAGGATGAAAAGCAGCACAACTACAGAAATGACCACCTCAACAACCACAACCACACCTGaacccacaacaacaacaacactgggGTCAACAAGTGAATCTTGGTATGACTGGTTTGAACAGGAGAGCTTTAACTTTGAGCACACAATAGATGAAGATTAGAGAAGAATCACCAgacgtttacatacactgtataaaaagccacataaccatttaaaaaagaaaagagatgttaatgtgactcaacgttttctcttttaggtaagttaggattatcacatgtgtttctgttctgcttaatagcagaataatgagagagatatttgttgagaaattgttataacttttcttgaaagtcaaatttacacacaataagattattatggcTCTTAAAAAGTtgagatgatggtgtcaaggttttgtaagtttctgattggctaatcgaCAACATTTGAgctaatgtgaggcacaactgtagaatagtattgaaggaaaacctcaaacacactgcttccttgtgtgacaacatgggaaaataaacaagccagaatcaacaacaaagccagattacagttagttaaattacactgggaaaaagactaatgtttggagacatgtcctgtggtctgatggaactaagattgaactgtttggccataatgatcagtgttacatctggaggacaaaggggaaaacTTACAAGCCtacaacaccatcccaactgtgaagtatggggacggccgcatcatgttgtggggctgttttgctgcaggagggactggtccacttcacagcatagatggcatcttgaagaaagaacattatgtagaaatactgaagcaacttctcaagacatcagccaggaaattacaacttggccacagatgggtcttccaaacagaccatgaccctaagcatactgccaaattagttcaaatgtgctttgagGACAATAGAGTGAATGTtttagagtggccatcacaaagccctgagctcaatcctattgacaatgtgtgggcagagttgaaaaagcttgtgcgagcaagacagcctacaaatctgactcagttacagcaattctgtcaggaggaatgggccaaaattcctgcaaactattgtgagaagcttgtggaaggatacccaaaacataaccaaagttatacagtttaaaagcaaagctaaaaacataccaaggaaatgtgtgtaaactttcgactgtctagaaattaataaaaaacattctCTCATTATtgtggcatttagcaaatgtaaatcatttaggtaatcctaacagacctaaaatagtaaacgtttagtgatttaccatcagacattttttttaaaaatggttctgttccttttttttagagtgtatgtaaacgtcTGGGTTTAACTGTATGTGGATCCTTAAAGCCCTTTTAAAGCTTTAAGGCTCGTAAGGGGATAGTTTACTCACAAAATGAAAATTTCTTTCTATTGTTGATCAAAAAaattagatattttgaagaaataccCATTCTGCTGATggaaaaatatcttgttttgttcaacagaagcaagaaaatGATCAAAGTTTAGAACAATTTTAGTAAATGTTGAGTTGTGAGCCATCCATAAATCGTAGATCATGCTCTCTGTGGAACAGAGTCTATCAGACAGAAATATTATATCTTATTTAATTCATGAATCCTGTTCACtagattttgttttgtattaaaagGTGGTAAATGCCTGTCCTCAAGTTTCGTGCTTGTGCAAATATTATAATTGCACACTTTTTTCTAATAAAATGTGTCAATATCA

Function

symbol description
aebp1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and collagen binding activity. Involved in negative regulation of transcription by RNA polymerase II and regulation of collagen fibril organization. Located in extracellular exosome. Colocalizes with collagen-containing extracellular matrix. Implicated in Ehlers-Danlos syndrome classic-like 2.

GO:

id name namespace
GO:0016485 protein processing biological_process
GO:0006508 proteolysis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0005615 extracellular space cellular_component
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2390 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome classic-like 2. Orthologous to human AEBP1 (AE binding protein 1).

Ensembl:

ensembl_id ENSDARG00000091726

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003620 False 3383 mRNA 0.51 20 2807136 2836641
TCONS_00003621 True 4886 mRNA 0.46 20 2807176 2838190

Neighbor

gene id symbol gene type direction distance location
XLOC_001817 pnx coding upstream 5279 2799285 ~ 2801857 (+)
XLOC_001816 grk5 coding upstream 51758 2715548 ~ 2755378 (+)
XLOC_001814 setd9 coding upstream 115761 2684958 ~ 2691375 (+)
XLOC_001815 FP085363.1 coding upstream 118455 2688565 ~ 2688681 (+)
XLOC_001813 ccl27b coding upstream 135841 2669405 ~ 2671295 (+)
XLOC_001819 ykt6 coding downstream 3015 2841205 ~ 2850936 (+)
XLOC_001820 ccar2 coding downstream 37830 2876020 ~ 2898402 (+)
XLOC_001821 erap1a coding downstream 60918 2899108 ~ 2921297 (+)
XLOC_001822 zfyve16 coding downstream 137784 2975974 ~ 3026523 (+)
XLOC_001823 NA coding downstream 139345 2977535 ~ 2979504 (+)
XLOC_001807 NA non-coding upstream 303094 2499533 ~ 2504042 (+)
XLOC_001806 NA non-coding upstream 369228 2402308 ~ 2437908 (+)
XLOC_001804 NA non-coding upstream 815668 1966857 ~ 1991468 (+)
XLOC_001803 NA non-coding upstream 886116 1904355 ~ 1921020 (+)
XLOC_001827 NA non-coding downstream 424388 3262578 ~ 3269818 (+)
XLOC_001830 CU570980.1 non-coding downstream 570593 3408783 ~ 3408900 (+)
XLOC_001834 NA non-coding downstream 1018877 3857067 ~ 3857885 (+)
XLOC_001839 NA non-coding downstream 1451515 4289705 ~ 4299850 (+)

Expression


Co-expression Network