XLOC_001820 (ccar2)


Basic Information

Item Value
gene id XLOC_001820
gene name ccar2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2876020 ~ 2898402 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003625
GATGAACTGACACacgaaacaaacaaaagcatCAACGTAGATTAAAAAACAACCACGAACACAAAATACACATGAGGCAGCGTGTGTTTACTGGGGTGGTCACTCAGATGCAGGAGCATCATGGGATTGTGGATCAGGATGTTCATTTTCCAATGAGTGTTGTGGTTGGTCGTATGCCTGTTGTGGGTGAAAAAGTGTTGGTGAAAGCAATCCAGGACTCTCAAAAGCCCATCAGCTGGACGGCACAGAAAGTTCAGACCCTGAACGGACAGcCCTTTAAATCTCCCCCTCCGCTGCTGCCCTCCATGTCATCCACTCTGAAGCCGGGGATTTTAGGGACCAAACCACAACCTCTGCTGAAATCCCCCAAAATACCACCGCTGATTCCCAGTATGCAGCCAAATTCTG
>TCONS_00003626
GATGAACTGACACacgaaacaaacaaaagcatCAACGTAGATTAAAAAACAACCACGAACACAAAATACACGAGAAACGAAAATCTGATATGGAGactcagATGAGGCAGCGTGTGTTTACTGGGGTGGTCACTCAGATGCAGGAGCATCATGGGATTGTGGATCAGGATGTTCATTTTCCAATGAGTGTTGTGGTTGGTCGTATGCCTGTTGTGGGTGAAAAAGTGTTGGTGAAAGCAATCCAGGACTCTCAAAAGCCCATCAGCTGGACGGCACAGAAAGTTCAGACCCTGAACGGACAGcCCTTTAAATCTCCCCCTCCGCTGCTGCCCTCCATGTCATCCACTCTGAAGCCGGGGATTTTAGGGACCAAACCACAACCTCTGCTGAAATCCCCCAAAATACCACCGCTGATTCCCAGTATGCAGCCAAATTCTGGTGGGATGATCCAGCTGTCCCATCACCAGCAGATGGGCTGGAATGGGCCATTTGATGGATGGGGTGGAGGACGGAAGAGGCACTCGGAGGGGATGGGAGGGCGCAGAGCTGGACGCTGGGAGGACGGTGGTGGAGGGCTGTGGGGAGGAGACCTCATGCACCAGAAACGAAAGAGATGGAGGGCCACATCAGAAGAGGAAGCGCCCAAAAAGACCAGCTCTGCAGCCACACACAGCGTGCCTCTGTTCTCCTGCTTCTCCAGGGACACCCAGGCCTGTGATTACCTGGAGCTTCAGCGCCGGTATCCACACCTGCACATCCCATCCAGCCTCTTCCACCTCCAGCTGTCCT
>TCONS_00003627
GATGAACTGACACacgaaacaaacaaaagcatCAACGTAGATTAAAAAACAACCACGAACACAAAATACACaagCAATCATTATACTTTCTTTTGCATGCAAAGGAGAAACGAAAATCTGATATGGAGactcagATGAGGCAGCGTGTGTTTACTGGGGTGGTCACTCAGATGCAGGAGCATCATGGGATTGTGGATCAGGATGTTCATTTTCCAATGAGTGTTGTGGTTGGTCGTATGCCTGTTGTGGGTGAAAAAGTGTTGGTGAAAGCAATCCAGGACTCTCAAAAGCCCATCAGCTGGACGGCACAGAAAGTTCAGACCCTGAACGGACAGcCCTTTAAATCTCCCCCTCCGCTGCTGCCCTCCATGTCATCCACTCTGAAGCCGGGGATTTTAGGGACCAAACCACAACCTCTGCTGAAATCCCCCAAAATACCACCGCTGATTCCCAGTATGCAGCCAAATTCTGGTGGGATGATCCAGCTGTCCCATCACCAGCAGATGGGCTGGAATGGGCCATTTGATGGATGGGGTGGAGGACGGAAGAGGCACTCGGAGGGGATGGGAGGGCGCAGAGCTGGACGCTGGGAGGACGGTGGTGGAGGGCTGTGGGGAGGAGACCTCATGCACCAGAAACGAAAGAGATGGAGGGCCACATCAGAAGAGGAAGCGCCCAAAAAGACCAGCTCTGCAGCCACACACAGCGTGCCTCTGTTCTCCTGCTTCTCCAGGGACACCCAGGCCTGTGATTACCTGGAGCTTCAGCGCCGGTATCCACACCTGCACATCCCATCCAGCCTCTTCCACCTCCAGCTGTCCTGGACGGAAAGTTTCCCTCTGGACCAGCCACTACCTCTAAGAGGACCCTGTCTCTTCCACATAGGACCAAACCAGCCGGAGACTGAAGCGGACGTTTGCGAGTCCACCGATGATGCTTTTGCTGTTAGGGTCCTGTTGTTTTCTATGCCGTGTCTTGAGGACGTGTATTCACAGTGTTGTAACCTCTCGAATGACGGTCAGACGCAGAAGGAGGCCGTTCATCCCTCCACACTTCTCAAATTTCTGATAGTGGACAGTGGAGGTGAACAGCGTCTTCCAGGAGGCCACTGGTCCCCGGAAGCAGACGGAGCCAATCCAGCGAAGGACAGTTTGACGCTGGTCAACACGGCGGTCCGATGCTTGAAGGAGCAAGCTGGACTGGACCTCTCAGCCTGCACACAGTGGTATAAGATGGCGGAGCTGAGATATCTTTCAGGAGATAAAGTGGAGACCGTCGTGGTCTTAATGCCAGATGTGTGGAATCTAGTGCCATCAGAAGAAGAGTGGGCGAGCTTACAGCTGGAAGATGACCTGTCACTCCCAGAATCTCCGTCTGTGGTTTTTCACCCATCAGCCGGACTAAATCTGTCTGCGGTTTCTCTGTCGTCGCTGCTGGAGCCGCAGACCCTTCAGACCAGAGACAGCTGTGAGGTGAGCTTGATTGCGGAGATGTTCAGCGAGATGCTCCAGAGGGATTTTGGGCTTCAGCTGTATCGGTGTCTCTGCAGTCTGCCTCAAAACATCAGCGACCCACAGACTGAAGCCAAACAGGACAACAACACCGCCAAGgaggaggaggaggagattaAAAAGTCCGACAAAAAGACCACAAAGAAGAAAGATTCGAGTGATGCAAGGAAAACAGTCAAAGAAGAGAAAGACGCAGAGGACGCCATGCTGACAGACGAGACTGAAGCAGTGGGAAAGCAGCCATCGAGAGACGGTAAAACTGTGAGCGCAGGAGTGGAAGAGCAGAGCAGCAACGCAGCCGACAATCAGACCTCCAAACACTGTGAGCGTCCTCCGGGCTGGACGGACGAACTGCCCCGTAAAGTGCTTCTGTCCTGCGTGTTCTTCGACCGGCAGCTGACAGGAAGTCTTCGGGAAGCAGATCTGGTCAACATCCTGCTGTCGCTCGGCCTGTTTCTCAGTCCTGCTCAGGCGCAGGATTTGGTCAAAAGGGCTGCAGTCGGTGGGCTGTGCCTCTACAGAAATCTGTGCAGCCGTTGGTCAGACAGCGCTCCTTCAGACGCCAGCGCCATAGCTGAAGGAAATAAAGCGATGTTGCCCACTCAGCCGTGTAAAGACAGAGGGTCGGTCCGTCGCACCAGTAACACCGATGTGGTGAATTACAAAGGGAAAGTCGTCAACCTGCCAAACCTGCTGCAGTGTCTGGAAAGCAGCAAAGTGGCGCAGCGGGACCTGGAGAAGAGTGTGGCCGCACTGCAGTCCAGACTGGATGCAGCAGAAGCACTACAGGCCTCCAGTGAACAGGAGCTGGCCCAGCAGAAAGAGCTGAAGAGGAAACTGGAGAAAGCCGAGATGATCAATAAAACATACGAGAAGAGTTTGAAAGAAAACGCCGGACAGATGACCGCTGTCATCGAGAAAATGCAGAGGATGGTCGAACAGACAACGACCATCACAAATGCTAATGCAGGAAAGGAAGAGAAGCTGTGATGTCCTGGAAGCTGATTGGACGGTGCTGGACTGAGCAGAGTAGAAAGAAACCTGCAAAATAAAAGATTCTTTAGCTTTgtctattaaaataaacaggtaatttattattattgttataattttggGGTGTAAAACAGTACGTGCTTTTAAGCACATAGATAATGGGAAGAATTGTGTCGGTGGGCCTTTGTAAAGGTTTTTATCCATTAAAATGAACGTTGACTCACTTTAGAATGTAAAAcctttattcaattttattttgttatgatTTCTGGCAGCTATGAAAGTGTAATCCTTGTATGAAACTGTCAACTCATAAACGGATATGACTGTTTGTAGTGCTGTACAATGGTTTTATTGTATGTtcttgtatttattgtattttttaaaattggttttattgttttcttttctttttacatgTGAGTTTACAATGGTGGGCTAATGTCAGAtctcttttaaaatcattttgatGAATTGGATTTTATTGAtttgtatttatcttttttttttttttgttactgagCATTGAAGCATTACTGTTATAAAGCATTCACATACATAACTAGATTTCTGATGGTTAAGATCTAGTGAAAGGTCACTTATTGGAAATACTGCCAGAATTTTCCCTTGCAATTAAATAATTATGAGTCCA
>TCONS_00003628
ACGTAGATTAAAAAACAACCACGAACACAAAATACACCAATCATTATACTTTCTTTTGCATGCAAAGGAGAAACGAAAATCTGATATGGAGactcagATGAGGCAGCGTGTGTTTACTGGGGTGGTCACTCAGATGCAGGAGCATCATGGGATTGTGGATCAGGATGTTCATTTTCCAATGAGTGTTGTGGTTGGTCGTATGCCTGTTGTGGGTGAAAAAGTGTTGGTGAAAGCAATCCAGGACTCTCAAAAGCCCATCAGCTGGACGGCACAGAAAGTTCAGACCCTGAACGGACAGcCCTTTAAATCTCCCCCTCCGCTGCTGCCCTCCATGTCATCCACTCTGAAGCCGGGGATTTTAGGGACCAAACCACAACCTCTGCTGAAATCCCCCAAAATACCACCGCTGATTCCCAGTATGCAGCCAAATTCTGGTGGGATGATCCAGCTGTCCCATCACCAGCAGATGGGCTGGAATGGGCCATTTGATGGATGGGGTGGAGGAC
>TCONS_00003629
ATGGAGactcagATGAGGCAGCGTGTGTTTACTGGGGTGGTCACTCAGATGCAGGAGCATCATGGGATTGTGGATCAGGATGTTCATTTTCCAATGAGTGTTGTGGTTGGTCGTATGCCTGTTGTGGGTGAAAAAGTGTTGGTGAAAGCAATCCAGGACTCTCAAAAGCCCATCAGCTGGACGGCACAGAAAGTTCAGACCCTGAACGGACAGcCCTTTAAATCTCCCCCTCCGCTGCTGCCCTCCATGTCATCCACTCTGAAGCCGGGGATTTTAGGGACCAAACCACAACCTCTGCTGAAATCCCCCAAAATACCACCGCTGATTCCCAGTATGCAGCCAAATTCTGGTGGGATGATCCAGCTGTCCCATCACCAGCAGATGGGCTGGAATGGGCCATTTGATGGATGGGGTGGAGGACGGAAGAGGCACTCGGAGGGGATGGGAGGGCGCAGAGCTGGACGCTGGGAGGACGGTGGTGGAGGGCTGTGGGGAGGAGACCTCATGCACCAGAAACGAAAGAGATGGAGGGCCACATCAGAAGAGGAAGCGCCCAAAAAGACCAGCTCTGCAGCCACACACAGCGTGCCTCTGTTCTCCTGCTTCTCCAGGGACACCCAGGCCTGTGATTACCTGGAGCTTCAGCGCCGGTATCCACACCTGCACATCCCATCCAGCCTCTTCCACCTCCAGCTGTCCTGGACGGAAAGTTTCCCTCTGGACCAGCCACTACCTCTAAGAGGACCCTGTCTCTTCCACATAGGACCAAACCAGCCGGAGACTGAAGCGGACGTTTGCGAGTCCACCGATGATGCTTTTGCTGTTAGGGTCCTGTTGTTTTCTATGCCGTGTCTTGAGGACGTGTATTCACAGTGTTGTAACCTCTCGAATGACGGTCAGACGCAGAAGGAGGCCGTTCATCCCTCCACACTTCTCAAATTTCTGATAGTGGACAGTGGAGGTGAACAGCGTCTTCCAGGAGGCCACTGGTCCCCGGAAGCAGACGGAGCCAATCCAGCGAAGGACAGTTTGACGCTGGTCAACACGGCGGTCCGATGCTTGAAGGAGCAAGCTGGACTGGACCTCTCAGCCTGCACACAGTATAAGATGGCGGAGCTGAGATATCTTTCAGGAGATAAAGTGGAGACCGTCGTGGTCTTAATGCCAGATGTGTGGAATCTAGTGCCATCAGAAGAAGAGTGGGCGAGCTTACAGCTGGAAGATGACCTGTCACTCCCAGAATCTCCGTCTGTGGTTTTTCACCCATCAGCCGGACTAAATCTGTCTGCGGTTTCTCTGTCGTCGCTGCTGGAGCCGCAGACCCTTCAGACCAGAGACAGCTGTGAGGTGAGCTTGATTGCGGAGATGTTCAGCGAGATGCTCCAGAGGGATTTTGGGCTTCAGCTGTATCGGTGTCTCTGCAGTCTGCCTCAAAACATCAGCGACCCACAGACTGAAGCCAAACAGGACAACAACACCGCCAAGgaggaggaggaggagattaAAAAGTCCGACAAAAAGACCACAAAGAAGAAAGATTCGAGTGATGCAAGGAAAACAGTCAAAGAAGAGAAAGACGCAGAGGACGCCATGCTGACAGACGAGACTGAAGCAGTGGGAAAGCAGCCATCGAGAGACGGTAAAACTGTGAGCGCAGGAGTGGAAGAGCAGAGCAGCAACGCAGCCGACAATCAGACCTCCAAACACTGTGAGCGTCCTCCGGGCTGGACGGACGAACTGCCCCGTAAAGTGCTTCTGTCCTGCGTGTTCTTCGACCGGCAGCTGACAGGAAGTCTTCGGGAAGCAGATCTGGTCAACATCCTGCTGTCGCTCGGCCTGTTTCTCAGTCCTGCTCAGGCGCAGGATTTGGTCAAAAGGGCTGCAGTCGGTGGGCTGTGCCTCTACAGAAATCTGTGCAGCCGTTGGTCAGACAGCGCTCCTTCAGACGCCAGCGCCATAGCTGAAGGAAATAAAGCGATGTTGCCCACTCAGCCGTGTAAAGACAGAGGGTCGGTCCGTCGCACCAGTAACACCGATGTGGTGAATTACAAAGGGAAAGTCGTCAACCTGCCAAACCTGCTGCAGTGTCTGGAAAGCAGCAAAGTGGCGCAGCGGGACCTGGAGAAGAGTGTGGCCGCACTGCAGTCCAGACTGGATGCAGCAGAAGCACTACAGGCCTCCAGTGAACAGGAGCTGGCCCAGCAGAAAGAGCTGAAGAGGAAACTGGAGAAAGCCGAGATGATCAATAAAACATACGAGAAGAGTTTGAAAGAAAACGCCGGACAGATGACCGCTGTCATCGAGAAAATGCAGAGGATGGTCGAACAGACAACGACCATCACAAATGCTAATGCAGGAAAGGAAGAGAAGCTGTGA

Function

symbol description
ccar2 Predicted to enable RNA polymerase II complex binding activity and nuclear receptor coactivator activity. Predicted to be involved in RNA splicing and regulation of transcription, DNA-templated. Predicted to act upstream of or within positive regulation of apoptotic process. Predicted to be located in cytoplasm. Predicted to be part of DBIRD complex. Predicted to be active in nucleus. Orthologous to human CCAR2 (cell cycle and apoptosis regulator 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0044609 DBIRD complex cellular_component
GO:0030374 nuclear receptor coactivator activity molecular_function
GO:0000993 RNA polymerase II complex binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-207 Predicted to enable RNA polymerase II complex binding activity and nuclear receptor coactivator activity. Predicted to be involved in RNA splicing and regulation of transcription, DNA-templated. Predicted to act upstream of or within positive regulation of apoptotic process. Predicted to be located in cytoplasm. Predicted to be part of DBIRD complex. Predicted to be active in nucleus. Orthologous to human CCAR2 (cell cycle and apoptosis regulator 2).

Ensembl:

ensembl_id ENSDARG00000038302

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003625 False 408 mRNA 0.48 4 2876020 2878183
TCONS_00003626 False 789 mRNA 0.53 8 2876020 2882174
TCONS_00003627 False 3156 mRNA 0.48 19 2876020 2898402
TCONS_00003628 False 506 mRNA 0.49 6 2876054 2880278
TCONS_00003629 True 2376 mRNA 0.54 18 2876378 2897747

Neighbor

gene id symbol gene type direction distance location
XLOC_001819 ykt6 coding upstream 25084 2841205 ~ 2850936 (+)
XLOC_001818 aebp1 coding upstream 37830 2807136 ~ 2838190 (+)
XLOC_001817 pnx coding upstream 74163 2799285 ~ 2801857 (+)
XLOC_001816 grk5 coding upstream 120642 2715548 ~ 2755378 (+)
XLOC_001814 setd9 coding upstream 184645 2684958 ~ 2691375 (+)
XLOC_001821 erap1a coding downstream 706 2899108 ~ 2921297 (+)
XLOC_001822 zfyve16 coding downstream 77572 2975974 ~ 3026523 (+)
XLOC_001823 NA coding downstream 79133 2977535 ~ 2979504 (+)
XLOC_001824 rasgrf2a coding downstream 151234 3049636 ~ 3106762 (+)
XLOC_001825 ckmt2a coding downstream 212602 3111004 ~ 3129887 (+)
XLOC_001815 FP085363.1 non-coding upstream 187339 2688565 ~ 2688681 (+)
XLOC_001807 NA non-coding upstream 371978 2499533 ~ 2504042 (+)
XLOC_001806 NA non-coding upstream 438112 2402308 ~ 2437908 (+)
XLOC_001804 NA non-coding upstream 884552 1966857 ~ 1991468 (+)
XLOC_001803 NA non-coding upstream 955000 1904355 ~ 1921020 (+)
XLOC_001827 NA non-coding downstream 364176 3262578 ~ 3269818 (+)
XLOC_001830 CU570980.1 non-coding downstream 510381 3408783 ~ 3408900 (+)
XLOC_001834 NA non-coding downstream 958665 3857067 ~ 3857885 (+)
XLOC_001839 NA non-coding downstream 1391303 4289705 ~ 4299850 (+)

Expression


Co-expression Network