XLOC_018200


Basic Information

Item Value
gene id XLOC_018200
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 33230163 ~ 33293844 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036882
ACCGACTCAACTCTGCCGCCACGTGGACACTGGACGATCACGCAATGCGCCAGTCTGTTTACATTCGGAAACGAGGATGTGATTATCAGACTGAATGATGTCCAGTTTGAGACCAGCAGACTCTTCAGATCACTTCACACAGCGTCACACAAGCGTCTCCTTCCATCCGCACTACTTGCACAGAGACAGGCCTCTCTTTCTAAACCCCGATTAGCAGAATTCCCATCGGGATGTGGGATCGAGGACAGGAACGGGATCAAGGAGACAAGAGATGATCCCATTTTTCCCCCCAAATCCTGCCTCTCAGAGGAAATGAGGCGCAGCGCCACCTCTCACCTCCATGGTTTTGATGTGCCGCCCTGTTTGGACACTGtgggcatttatttattttataactgaTCCCGGTTCAGCTCCAGCTGGAGGGAATAAAGCAGATGGAATGTTTTGGAGTGTAAACAGACTGGAGCTCTTATAGACCAGAAGGTAGTGTCTATACCTCGACCCGTCccgactgctgatctgtgctgaAAGGGGTCAGTTTGGGAAGTGACCTCGCTCCTTTTCAAACCACAAATAATGAGACGTGAAGCTCGTCAGCGATGGTTTATCAAGAGATCAAAAGATCTGCCCGTTCAGCGTCAGAATGTGCTGAATTCGATGTCTTTTCTGCATGTTGAATGAGTGTTTGTACAGCAGGAGTTGATACCTGGAGGGAGCAGTTTTCACATCACTCACGGTCCGCTGTGCTGTTTATTTATCTAGACGGTGTGTGTTATAAACACTGAGAATTTATGAGCACTTCCACTCTAGGCTTGTGTGTCTGTTTGGTTTGGAGCTTTTAGGCTTGTTCTGACAAAAAAAGGCCTTTAAAGTTGAGTCCAAAATATgagtcatattattattttttcttctgttcaaAGTACACAAGATATGAAAAAAGGTTTGATTGTTAGAACTGAGATAGCAAGTCATACCCTTTTTATTTCAATGCAATTcacaattaatgtttttttaatcaaaacaacatttgcaGGGAGACTTTGtctaaaaatgtggaaaagttaGAGAAAAAAACCGAAGCAGAGAGAAAATATTTTAGTTGATATTATAACTTTGTCtgacttgattgattgattttgtgACGTATTATGACTTTAAAatacttggtaacactttattttgacagtctatttgagtattaatagactgtctgcttaatatctgtggatactgctccttcaacagacatttaactgacaataagaaacttgacatgtacatgtcaacttgcactaaccctaaccccaatctaacagtctacttataatctaataagaattagttggcatgtagatgcaatgcaacttaaattcaac

Function

GO:

id name namespace
GO:0030695 GTPase regulator activity molecular_function
GO:0005096 GTPase activator activity molecular_function
GO:0060589 nucleoside-triphosphatase regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036882 True 1376 lncRNA 0.41 2 33230163 33293844

Neighbor

gene id symbol gene type direction distance location
XLOC_018199 nbas coding downstream 55264 32838467 ~ 33174899 (-)
XLOC_018197 si:dkey-6f10.3 coding downstream 477706 32655858 ~ 32752457 (-)
XLOC_018198 si:dkey-6f10.4 coding downstream 560821 32666384 ~ 32669342 (-)
XLOC_018196 CR354385.1 coding downstream 580204 32649843 ~ 32649959 (-)
XLOC_018195 CU138515.2 coding downstream 769772 32460275 ~ 32460391 (-)
XLOC_018201 NA coding upstream 55330 33349174 ~ 33463368 (-)
XLOC_018202 smek1 coding upstream 173317 33467161 ~ 33487729 (-)
XLOC_018203 erh coding upstream 200080 33493924 ~ 33497128 (-)
XLOC_018204 paplnb coding upstream 205534 33499378 ~ 33512443 (-)
XLOC_018205 si:dkey-65b13.13 coding upstream 219820 33513664 ~ 33515890 (-)
XLOC_017928 CU539064.1 misc downstream 23176462 10053405 ~ 10053701 (-)
XLOC_018188 NA non-coding downstream 1091095 32137025 ~ 32139068 (-)
XLOC_018183 NA non-coding downstream 1485657 31557868 ~ 31744506 (-)
XLOC_018178 AL929014.1 non-coding downstream 2184958 31045075 ~ 31045205 (-)
XLOC_018210 BX571790.1 non-coding upstream 407273 33701117 ~ 33701233 (-)
XLOC_018211 NA non-coding upstream 414274 33708118 ~ 33711255 (-)
XLOC_018212 NA non-coding upstream 419696 33713540 ~ 33717068 (-)
XLOC_018213 NA non-coding upstream 427150 33720994 ~ 33722205 (-)
XLOC_018177 NA non-coding downstream 2162857 31002188 ~ 31067306 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G109521 NA non-coding CI01000019 null 2488291 ~ 2491656 (-)
bowfin (Amia calva) G99624 NA unknown CM030132.1 CM030132.1 16131044 ~ 16131387 (+)
tiger barb (Puntius tetrazona) G83999 NA non-coding NC_056709.1 CM032078.1 22842132 ~ 22844908 (-)