XLOC_018204 (paplnb)


Basic Information

Item Value
gene id XLOC_018204
gene name paplnb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 33499378 ~ 33512443 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035868
TCTGCATGGACATCAGTGTCACAACTCTCTCGCCGTGACCGAGTCAGCTTGACATTTACAAAGACGCTGAGAAGATGATGCTCCACTCTCTTCTCGGGACTTTGTGCCTGATCTCTGCCGTTTTCAGTTTGAGGCCACCATCTGATGATTATTATGGTGAATATGGCCCTTATGGACCCTGCAGCCGTACATGTGGTGGAGGAGTCGCTGTGAGAACAAGGATCTGCAACACGATGAGGACGGATGGTGGACACAATTGCGTGGGACCATCAAAGTCCTACAAGCTCTGTAACACACAGGAATGCCCTGCTGGATCTAGAGATTTCCGTGAGGAGCAGTGTTCCCACTTTGACCAAATGACCTTCCAGGGGAAACGTTATACCTGGCAGCCATACTATGGAGCTTCAAACCCGTGTGAGCTGGTCTGTGTGCCCAGAGGAGAGAACTTCTACTACCGTCACAGACCCGCTGTGGTGGACGGCACTCTATGCCACGTGGGCCGCAGAGACGTGTGTGTTGAGGGCGTCTGCAGAGCGGTGAGCCATGGAGAGATTGTGGGCTTTGAGGATCGTGATATTCCTGTCACTTCTAGACATGGACCTGGTGCTGCTGTCCATCTGGACACTTACAGATACACATACAGTGCCTACTCTGAGTGTTCCCGTTTATGTGGAGGAGGTGTTCAGAGCCGCACTGTTTACTGTGTTCATGAGAGAACATCGGCAATGGTTGATGAGTCCCATTGCATTGCAAAGGGCCTCAGAAAACCAACTGCACAGGTTGCCTGCAATGAACACGCCTGTGCCGAATACAGCGCCGGCCCATTTGGTGATTGTTCAGTGACCTGTGGTGAAGGGCTGCAGACACGAGAGGTGATCTGTGTCGGGGCCAGAGGAGAGCGACTCTCTGAGCACCACTGCAGTGGACTCACGCGACCACAGGCCACCAAAGCCTGCAAGAGACCGGCCTGCCATCAGGTCTTCAGATACTACACCAACGACTTCAGCCTGTGCACCCGGAGCTGTGGAACTGGCACCCGTGAGCGTAGAGTGGTGTGCATGGATTTGGATCAGCATCCTTATTCAGATGACAGATGTGCTTCTCTTTCCAGACCTCATGCTGTGGAGAACTGCAACACACAGCCCTGTCCTGGCCCGCAGACGGTGCCCAGTGTGCAGAACCCCAATGGTTACGAGAGCTCCTTGCGTGGATTTGTGTCTTACACTCACGGCCCAGTATCAGTTTACAGACCAAGCGATCCTTATCCCACAGTGACTGGTCCTCATTGCGCTCAGTCTCATTACGGCTGCTGTCCTGATGGCCACACTACAGCCTCTGGGCCTCGTGGAGAAGGCTGTGCTCATGATGACTGCCAGAGATCCAGaTACGGCTGCTGTCTGGATGGAATAACAGCTGCTCTGGGTTACAGAAGAGCGGGATGTCCTGACTCCTCCTATGGGGATCACAGTCCCTCTGCTAGTGTGTGCTCCTTGGCACGAGATGTCGGGCCCTGTTATGAATATAAATCTCGCTTCTACTTTGATCATTCCTCTGGCTCTTGCTCCCAGTTCTGGTTTGGTGGATGCCAAGGAAATGGCAATAACTTTGTCTCCAAGGTGGCGTGCGAGCGGACGTGTAAGGCTTCTGTCAGAGGAAGAGAACCAACGTCCAGGAGAGTGATCTACGATGTCAGAGGTTATAGAGTGAGATCCCGTGCATAATAAATGTCCAGACAAATCCAACTCATAAACATGTAGATAAAACTTCAATTGTGCTGATTTGAAAGCAGTCTTGGGTTTATACTGACATCTACTGGCATTGATTTGTTTAAACTAAGCTTTTTTAAGGGATGAGAGAGAAACACTTTATCAAACATGACTGCATCAAAGCTAAAGATAATTTCCTTTCTTTTTATGTTTCGGTGTAAGTACTTTGGTTGTATACTCTTCCTAAGCCATTAAAGTGTTAACACAAA
>TCONS_00035869
ATGATGCTCCACTCTCTTCTCGGGACTTTGTGCCTGATCTCTGCCGTTTTCAGTTTGAGGCCACCATCTGATGATTATTATGGTGAATATGGCCCTTATGGACCCTGCAGCCGTACATGTGGTGGAGGAGTCGCTGTGAGAACAAGGATCTGCAACACGATGAGGACGGATGGTGGACACAATTGCGTGGGACCATCAAAGTCCTACAAGCTCTGTAACACACAGGAATGCCCTGCTGGATCTAGAGATTTCCGTGAGGAGCAGTGTTCCCACTTTGACCAAATGACCTTCCAGGGGAAACGTTATACCTGGCAGCCATACTATGGAGCTTCAAACCCGTGTGAGCTGGTCTGTGTGCCCAGAGGAGAGAACTTCTACTACCGTCACAGACCCGCTGTGGTGGACGGCACTCTATGCCACGTGGGCCGCAGAGACGTGTGTGTTGAGGGCGTCTGCAGAGCGGTGAGCCATGGAGAGATTGTGGGCTTTGAGGATCGTGATATTCCTGTCACTTCTAGACATGGACCTGGTGCTGCTGTCCATCTGGACACTTACAGATACACATACAGTGCCTACTCTGAGTGTTCCCGTTTATGTGGAGGAGGTGTTCAGAGCCGCACTGTTTACTGTGTTCATGAGAGAACATCGGCAATGGTTGATGAGTCCCATTGCATTGCAAAGGGCCTCAGAAAACCAACTGCACAGGTTGCCTGCAATGAACACGCCTGTGCCGAATACAGCGCCGGCCCATTTGGTGATTGTTCAGTGACCTGTGGTGAAGGGCTGCAGACACGAGAGGTGATCTGTGTCGGGGCCAGAGGAGAGCGACTCTCTGAGCACCACTGCAGTGGACTCACGCGACCACAGGCCACCAAAGCCTGCAAGAGACCGGCCTGCCATCAGGTCTTCAGATACTACACCAACGACTTCAGCCTGTGCACCCGGAGCTGTGGAACTGGCACCCGTGAGCGTAGAGTGGTGTGCATGGATTTGGATCAGCATCCTTATTCAGATGACAGATGTGCTTCTCTTTCCAGACCTCATGCTGTGGAGAACTGCAACACACAGCCCTGTCCTGGCCCGCAGACGGTGCCCAGTGTGCAGAACCCCAATGGTTACGAGAGCTCCTTGCGTGGATTTGTGTCTTACACTCACGGCCCAGTATCAGTTTACAGACCAAGCGATCCTTATCCCACAGTGACTGGTCCTCATTGCGCTCAGTCTCATTACGGCTGCTGTCCTGATGGCCACACTACAGCCTCTGGGCCTCGTGGAGAAGGCTGTGCTCATGATGACTGCCAGAGATCCAGaTACGGCTGCTGTCTGGATGGAATAACAGCTGCTCTGGGTTACAGAAGAGCGGGATGTCCTGACTCCTCCTATGGGGATCACAGTCCCTCTGCTAGTGTGTGCTCCTTGGCACGAGATGTCGGGCCCTGTTATGAATATAAATCTCGCTTCTACTTTGATCATTCCTCTGGCTCTTGCTCCCAGTTCTGGTTTGGTGGATGCCAAGGAAATGGCAATAACTTTGTCTCCAAGGTGGCGTGCGAGCGGACGTGTAAGGCTTCTGTCAGAGGAAGAGAACCAACGTCCAGGAGAGTGATCTACGATGTCAGAGGTTATAGAGTGAGATCCCGTGCATAATAAATGTCCAGACAAATCCAACT
>TCONS_00035870
GTGTTCAGAGCCGCACTGTTTACTGTGTTCATGAGAGAACATCGGCAATGGTTGATGAGTCCCATTGCATTGCAAAGGGCCTCAGAAAACCAACTGCACAGGTTGCCTGCAATGAACACGCCTGTGCCGAATACAGCGCCGGCCCATTTGGTGATTGTTCAGTGACCTGTGGTGAAGGGCTGCAGACACGAGAGGTGATCTGTGTCGGGGCCAGAGGAGAGCGACTCTCTGAGCACCACTGCAGTGGACTCACGCGACCACAGGCCACCAAAGCCTGCAAGAGACCGGCCTGCCATCAGGTCTTCAGATACTACACCAACGACTTCAGCCTGTGCACCCGGAGCTGTGGAACTGGCACCCGTGAGCGTAGAGTGGTGTGCATGGATTTGGATCAGCATCCTTATTCAGATGACAGATGTGCTTCTCTTTCCAGACCTCATGCTGTGGAGAACTGCAACACACAGCCCTGTCCTGGCCCGCAGACGGTGCCCAGTGTGCAGAACCCCAATGGTTACGAGAGCTCCTTGCGTGGATTTGTGTCTTACACTCACGGCCCAGTATCAGTGACTGGTCCTCATTGCGCTCAGTCTCATTACGGCTGCTGTCCTGATGGCCACACTACAGCCTCTGGGCCTCGTGGAGAAGGCTGTGCTCATGATGACTGCCAGAGATCCAG

Function

symbol description
paplnb Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Orthologous to human PAPLN (papilin, proteoglycan like sulfated glycoprotein).

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6023 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Orthologous to human PAPLN (papilin, proteoglycan like sulfated glycoprotein).

Ensembl:

ensembl_id ENSDARG00000042186

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035868 False 1975 mRNA 0.50 14 33499378 33512443
TCONS_00035869 False 1670 mRNA 0.53 13 33499609 33512275
TCONS_00035870 True 676 mRNA 0.56 5 33503167 33507458

Neighbor

gene id symbol gene type direction distance location
XLOC_018203 erh coding downstream 2250 33493924 ~ 33497128 (-)
XLOC_018202 smek1 coding downstream 11649 33467161 ~ 33487729 (-)
XLOC_018201 NA coding downstream 36010 33349174 ~ 33463368 (-)
XLOC_018200 NA coding downstream 205534 33230163 ~ 33293844 (-)
XLOC_018199 nbas coding downstream 324479 32838467 ~ 33174899 (-)
XLOC_018205 si:dkey-65b13.13 coding upstream 1221 33513664 ~ 33515890 (-)
XLOC_018206 rock2bl coding upstream 42938 33555381 ~ 33556983 (-)
XLOC_018207 si:dkey-65b13.9 coding upstream 51982 33564425 ~ 33566640 (-)
XLOC_018208 rock2b coding upstream 58869 33571312 ~ 33583779 (-)
XLOC_018209 rock2b coding upstream 88603 33601046 ~ 33705044 (-)
XLOC_017928 CU539064.1 misc downstream 23445677 10053405 ~ 10053701 (-)
XLOC_018196 CR354385.1 non-coding downstream 849419 32649843 ~ 32649959 (-)
XLOC_018195 CU138515.2 non-coding downstream 1038987 32460275 ~ 32460391 (-)
XLOC_018188 NA non-coding downstream 1360310 32137025 ~ 32139068 (-)
XLOC_018210 BX571790.1 non-coding upstream 188674 33701117 ~ 33701233 (-)
XLOC_018211 NA non-coding upstream 195675 33708118 ~ 33711255 (-)
XLOC_018212 NA non-coding upstream 201097 33713540 ~ 33717068 (-)
XLOC_018213 NA non-coding upstream 208551 33720994 ~ 33722205 (-)
XLOC_018214 NA non-coding upstream 213449 33725892 ~ 33728373 (-)

Expression


Co-expression Network