XLOC_018218 (selp)


Basic Information

Item Value
gene id XLOC_018218
gene name selp
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 33948642 ~ 33966148 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035885
TTGTTCATTGTGAGCCCCTCTGGCTTACTCATCTTTCTGATCTGGGACCTCCACCCTCAATGAACTGTTCTCACCCCCATGGAAACTTTAGCTTTGGATCTCAGTGTATGTTCTGGTGTGCAAACAGTCATGAGCTCAATGGAACCAGTCAGCTTGTCTGCACCTCCAATGGGTACTGGACTCATTCACCACCCATTTGTGTTGaagaaagaaactcaaacagactTGGAGTAAATGGAAGGGAAGATAATAATGGCAGtacttttgggtgaacaatccattTAATTGCACTTACAAAGGATGttactaaaatattttgtgtttccaGTAAAGGAGATGTCAGTGAGTGCCAGTATGCTGATATATGCTGCTGTGGGAGCTGTTTCTTCAGCTGGTTTACTTTTACTGGGTGGACTTATATTTTTGTTGACTCGCCAAATCACCAAAAAAGCTCATTACAGTCTGAATAAATCCTCATTGGAAGGAGACTTAAACCTGgcatttgaattaaattaaatctatgtCAATTCCTACTAAATGAaattgttcatgttgttttgtacttgcaataaatgaattaatacgTG
>TCONS_00035886
TCAATGCCTGGACTTACCATTACAACATCGACAGTAAGTTGGACTGGACAGCAGCTCGTCAGTGGTGTCAAACGCATTTCACGGATATGGTGGCCATCCAAAACCAGGCAGAAATTGCATACCTCAACGAAATCCTCCCCTTCCATCGGGCATACTACTGGATTGGCATTAGGAAGATTGACGGCCATTGGACATGGGTTGGGACCAAAAAGCGCTTGACCGTCGAAGCAGCAAACTGGGCGACAAATGAACCGAATAACCAGGGGACTGGAGAAGACTGTGTGGAGATTTACATCAAGAGGAACAAAGACACTGCCAAGTGGAACGACGAGAGGTGCAGCAAGAAGAAAGCAACTGTGTGTTATTTAGCCTCTTGCACTGAGATATCCTGCAGTGAGCATGCTAGGTGTGTGGAGACTATTGGGAACTACACATGTCAATGTGACGCTGGATTCATGGGTCCACGCTTTGTCCAGTGCCAGCCAGTTGAAAACCCACAGCAAGGTCTTGTGAAGTGTGACGGCGCCTTTGGAGAGTTTAACTTTAACTCATCATGCCAGTTCCAATGTGCCACTGGTTTCAATCTGGTGGGGGCAGAGAGGATACACTGCTTGACAACAGGACATTGGAACGACACCCTTCCTGTTTGTCAGGCTGTCAAATGTCAGGCAATCATTGATGCCCCTCGTGGTTGGACAATGATCTGCACTCATCCGCTTTCCATGAATAGCTTCAACTCCAGCTGTGAGTTTGAGTGTAAGGAGGGTTTTGAGCTCAATGGTTCAAAGACAACCTGGTGTGACCACACTGGCCACTGGACAGACAAAGCCCCCACTTGCACAGTGGTGACCTGTAATCCCCTCCTGGCCCCTGCAAATAGCAGTTTGGCCTGTGCTGATCCACTGGGAAAATCCTCCTTCCGTTCTTCTTGCAATGTTACCTGTGATGAGGGATACAAACTAAGAGGAAGAGCCGCACTAACCTGCCAGAGAGAAGGCAACTGGTCAGCACCATTGCCTGTATGTGAAGTGGTAAAGTGTGACTCACTGAAACCCATCGCGAACGGCTCCTACCAATGTCATGACTCTGTCGATGAGTTTTCTTATGGCTCCACTTGTTGGTTTAAATGTGATTCTGGTTTTGTCCACAATGGTACAAATTCCACTCACTGCACCAAACAGGGGAACTGGAGTCATATATCACCTATTTGTCATGCTGTACAGTGTCCTCCTCTCTCTGATACACCAAAATATGGAAGTGTGAGCTGTGTACACCCCCTGTCTACCAATAGCTACAACTCCAGCTGTGAGTTTAAGTGTGAGGAGGGTTTGGTGCTCAGAGGCACAGATTCCACTCATTGTGATCACACTGGGCACTGGACAAACACAGCACCTATTTGTACAGCTGTTGCTTGTGACCCTCTCGTGACCCCTGTGAATAGCAACCTGACCTGTGCCAATCCATTAGGGAAGTTCTCTTTTCGTACTTCTTGTGAGGTTATTTGTGAGGTGGGATACAAACTCAGAGGAGATACAACACTCAACTGTCTGAGTAATGGCAACTGGTCAGCACCAACGCCTGCATGTAAAGTCATAAGATGTGAAGCTCTGGAGTCTGTTCATCATGGTTCTGTACACTGTCATGACCTGCTGGAGGAGTTCAGCTATGGCTCTGAGTGCTGGCTTGAGTGTGAAGCTGGATTTACTTTGAATGGAACTAATTCCACTTACTGCACCTCACAAGGGAAGTGGAAGCAGGAGCTTTCTGTCTGTCAAGCACAGCAGTGCAGCTCATTAACTGACCCCTCTCATGGTAGTTTAACCTGCACACATCCCCATGGACAGTTCAGCTTTGGTACAGTGTGTGAAGTAAGCTGTCAGGCAGGCTTCAAACTGCACGGCACACCCAAAATGGAGTGTTTGGAGATGGGGAAGTGGACAGACACCCCACCCTTTTGCTTGGcTCAAGAGTGCCCTCTTTTGAGCGCTCCAGAAAATGGCTGGATGAATTGCTCTCATCCTCACTCTCTGTTTAGCTATGAATCCCAGTGTCTTCTGGGGTGTGAGACTGGCTTTGAGTTAACAGGAGAGCcagatatacagtgctcagcttcTGGGAACTGGAGTCAGGAGATGCCTTCGTGTGCTGTTGTTCATTGTGAGCCCCTCTGGCTTACTCATCTTTCTGATCTGGGACCTCCACCCTCAATGAACTGTTCTCACCCCCATGGAAACTTTAGCTTTGGATCTCAGTGTATGTTCTGGTGTGCAAACAGTCATGAGCTCAATGGAACCAGTCAGCTTGTCTGCACCTCCAATGGGTACTGGACTCATTCACCACCCATTTGTGTTGTAAAGGAGATGTCAGTGAGTGCCAGTATGCTGATATATGCTGCTGTGGGAGCTGTTTCTTCAGCTGGTTTACTTTTACTGGGTGGACTTATATTTTTGTTGACTCGCCAAATCACCAAAAAAGCTCATTACAGTCTGAATAAATCCTCATTGGAAGGAGACTTAAACCTGgcatttgaattaaattaaatctatgtCAATTCCTACTAAATGAaattgttcatgttgttttgtacttgcaataaatgaattaatacgTG
>TCONS_00035887
GCAGTGCAACTGTCTAAATAGTAAATCACATTTGACAGTAATTTTGTATGCATTGCTCTGTAAATTTCCTTTCAGATTTCAtgcaaataaaactgaattgTGTCAAAAAAAGATGGTTTTGTTGGTGCATATTACTCTATTTTCTGGATCTCTGGTATTTATGACTGGAATGTATAATGTCAATGCCTGGACTTACCATTACAACATCGACAGTAAGTTGGACTGGACAGCAGCTCGTCAGTGGTGTCAAACGCATTTCACGGATATGGTGGCCATCCAAAACCAGGCAGAAATTGCATACCTCAACGAAATCCTCCCCTTCCATCGGGCATACTACTGGATTGGCATTAGGAAGATTGACGGCCATTGGACATGGGTTGGGACCAAAAAGCGCTTGACCGTCGAAGCAGCAAACTGGGCGACAAATGAACCGAATAACCAGGGGACTGGAGAAGACTGTGTGGAGATTTACATCAAGAGGAACAAAGACACTGCCAAGTGGAACGACGAGAGGTGCAGCAAGAAGAAAGCAACTGTGTGTTATTTAGCCTCTTGCACTGAGATATCCTGCAGTGAGCATGCTAGGTGTGTGGAGACTATTGGGAACTACACATGTCAATGTGACGCTGGATTCATGGGTCCACGCTTTGTCCAGTGCCAGCCAGTTGAAAACCCACAGCAAGGTCTTGTGAAGTGTGACGGCGCCTTTGGAGAGTTTAACTTTAACTCATCATGCCAGTTCCAATGTGCCACTGGTTTCAATCTGGTGGGGGCAGAGAGGATACACTGCTTGACAACAGGACATTGGAACGACACCCTTCCTGTTTGTCAGGCTGTCAAATGTCAGGCAATCATTGATGCCCCTCGTGGTTGGACAATGATCTGCACTCATCCGCTTTCCATGAATAGCTTCAACTCCAGCTGTGAGTTTGAGTGTAAGGAGGGTTTTGAGCTCAATGGTTCAAAGACAACCTGGTGTGACCACACTGGCCACTGGACAGACAAAGCCCCCACTTGCACAGTGGTGACCTGTAATCCCCTCCTGGCCCCTGCAAATAGCAGTTTGGCCTGTGCTGATCCACTGGGAAAATCCTCCTTCCGTTCTTCTTGCAATGTTACCTGTGATGAGGGATACAAACTAAGAGGAAGAGCCGCACTAACCTGCCAGAGAGAAGGCAACTGGTCAGCACCATTGCCTGTATGTGAAGTGGTAAAGTGTGACTCACTGAAACCCATCGCGAACGGCTCCTACCAATGTCATGACTCTGTCGATGAGTTTTCTTATGGCTCCACTTGTTGGTTTAAATGTGATTCTGGTTTTGTCCACAATGGTACAAATTCCACTCACTGCACCAAACAGGGGAACTGGAGTCATATATCACCTATTTGTCATGCTGTACAGTGTCCTCCTCTCTCTGATACACCAAAATATGGAAGTGTGAGCTGTGTACACCCCCTGTCTACCAATAGCTACAACTCCAGCTGTGAGTTTAAGTGTGAGGAGGGTTTGGTGCTCAGAGGCACAGATTCCACTCATTGTGATCACACTGGGCACTGGACAAACACAGCACCTATTTGTACAGCTGTTGCTTGTGACCCTCTCGTGACCCCTGTGAATAGCAACCTGACCTGTGCCAATCCATTAGGGAAGTTCTCTTTTCGTACTTCTTGTGAGGTTATTTGTGAGGTGGGATACAAACTCAGAGGAGATACAACACTCAACTGTCTGAGTAATGGCAACTGGTCAGCACCAACGCCTGCATGTAAAGTCATAAGATGTGAAGCTCTGGAGTCTGTTCATCATGGTTCTGTACACTGTCATGACCTGCTGGAGGAGTTCAGCTATGGCTCTGAGTGCTGGCTTGAGTGTGAAGCTGGATTTACTTTGAATGGAACTAATTCCACTTACTGCACCTCACAAGGGAAGTGGAAGCAGGAGCTTTCTGTCTGTCAAGCACAGCAGTGCAGCTCATTAACTGACCCCTCTCATGGTAGTTTAACCTGCACACATCCCCATGGACAGTTCAGCTTTGGTACAGTGTGTGAAGTAAGCTGTCAGGCAGGCTTCAAACTGCACGGCACACCCAAAATGGAGTGTTTGGAGATGGGGAAGTGGACAGACACCCCACCCTTTTGCTTGGcTCAAGAGTGCCCTCTTTTGAGCGCTCCAGAAAATGGCTGGATGAATTGCTCTCATCCTCACTCTCTGTTTAGCTATGAATCCCAGTGTCTTCTGGGGTGTGAGACTGGCTTTGAGTTAACAGGAGAGCcagatatacagtgctcagcttcTGGGAACTGGAGTCAGGAGATGCCTTCGTGTGCTGTTGTTCATTGTGAGCCCCTCTGGCTTACTCATCTTTCTGATCTGGGACCTCCACCCTCAATGAACTGTTCTCACCCCCATGGAAACTTTAGCTTTGGATCTCAGTGTATGTTCTGGTGTGCAAACAGTCATGAGCTCAATGGAACCAGTCAGCTTGTCTGCACCTCCAATGGGTACTGGACTCATTCACCACCCATTTGTGTTGTAAAGGAGATGTCAGTGAGTGCCAGTATGCTGATATATGCTGCTGTGGGAGCTGTTTCTTCAGCTGGTTTACTTTTACTGGGTGGACTTATATTTTTGTTGACTCGCCAAATCACCAAAAAAGCTCATTACAGTCTGAATAAATCCTCATTGGAAGGAGACTTAAACCTGgcatttgaattaaattaaatctatgtCAATTCCTACTAAATGAaattgttcatgttgttttgtacttgcaataaatgaattaatacgTG
>TCONS_00035888
tatttatttgtttttaagaaaagcaagacaatatttttggtATGTCGATTGAAGAGttgagatgcaaaaacctctaaatgccatctgaaaaaTTCTTCTGAGCATTTTTGGcaagctcctgtgtgtatgttcagtaaatccactttttttggcaaaaaataggttctttgcattgcctttaaagtgaaataactaaacaaaaatattggAGGCTGAAGAAAAATGCTTATAtaggagaaaatttcagatgggacttaaaggtttttgcatctgaactcttcaattgtCTTTTACAAACAGTTGTGAAATGTGTCCTTTTAATGACAGCGCTATTACACAATTTCCCGTGACTTGTTTCCCATGCAGTGCAACTGTCTAAATAGTAAATCACATTTGACAGTAATTTTGTATGCATTGCTCTGTAAATTTCCTTTCAGATTTCAtgcaaataaaactgaattgTGTCAAAAAAA
>TCONS_00036893
GCTGACGATACATGGGAATGTGCATATCCAATGATGTGTGCAAGTAAGTTTGTACTTTACAGTTGTGCACCACATTTATTAAGTATAGTTTATTTTGTGATCTTACATTAAAGAAATGTTTGGAAAACcctaaacttatttttattttacatatataaataatccTGAATAAAAAGCATTGAAAAGTAACATTTAGTCAGTATTATTTCCACCTATTAGAGGGCAGAAAGctttcatgtttatttaatgaaattatatagatgtgaatgtgaataaataacagattaatcatgatttatgaatataaaaagaTTTAGAGTGCTCACTGACACTTGTTTTATCGTTCCTCAGGCTATATCCATTTTCTAATTGCACTTTTGGCATCGGCTGTCATCTCAATGTTTTGTGGTTGTTTATGTGGTTGCTGCATCTGCAGAAAGAGTGAGTTTTGTGatctttaatttataatttataatataccACAATTACAGTATGTATGAAGAAAAATATATCAtctaatattttttccttttaaattttGGCTTTAGGTAAAAAGGTAACATCAAGGTAATTTGTTGTtatgtgtaattttgttttagcATTACCACTGATTTGGATGTATGGAAATCTTAATTCACAATGTTTTCTTGTAGAACACAACAGGAGACTATAAATCCAGCATATGAAGCAGAACCTCCGCCACTAGAGGGTCCTCTATGTTCAGCATAACCATTTTggtcttttttcttctttatttcatTCTATTTATATGCTTTGTATTctcaaacatgaaaaaaataagaatctttagtatttatttgtttttaagaaaagcaagacaatatttttggtATGTCGATTGAAGAGttgagatgcaaaaacctctaaatgccatctgaaaaaTTCTTCTGAGCATTTTTGGcaagctcctgtgtgtatgttcagtaaatccactttttttggcaaaaaataggttctttgcattgcctttaaagtgaaataactaaacaaaaatattggAGGCTGAAGAAAAATGCTTATAtaggagaaaatttcagatgggacttaaaggtttttgcatctgaactcttcaattgtCTTTTACAAACAGTTGTGAAATGTGTCCTTTTAATGACAGCGCTATTACACAATTTCCCGTGACTTGTTTCCCATGCAGTGCAACTGTCTAAATAGTAAATCACATTTGACAGTAATTTTGTATGCATTGCTCTGTAAATTTCCTTTCAGATTTCAtgcaaataaaactgaattgTGTCAAAAAAA
>TCONS_00035889
GATGGACATATCACACACATACTGAAACAATGACCTGGAATGATTCAAGAAAGTGGTGTCAAACTCATCACACAGACATTGTGATGGTCCACAATGAAAACGTGACAAATGCTCTGAAAGAAAAGCTGCCAAAACTAAACTCTGCTCCTTACTACTGGATTGGAATGAAAAAGATCAATGACACTTGGATGTGGGTTGCCAATGGACAGGCTGCAGACTATATAAACTGGGCAGAAACAGAGCCCAATAATCGACTGTCTGAAGAAAACTGTGTAGAAATGTACATTACCAGCTTAAGCAAAAGTGGAAATTGGAACGATGATAGCTGCAGTAACCCAAAGTACCCCGTGTGTCACAAAGCACACTGCCCTAACATAACGTGCGGTGATAGAAAAGTCTGTGAAGAACAAGTCAACGactacagctgtgtgtgtaaaccaggTTTCTTGGGGCCACAATGTGACACAGttGTTTCATGTCCGCACCTCTCCACACCAACCAAAGGCTGGATGGAGTGCTCTGGACTGTACGGGAATTATTCCCTTGACTCAAAATGTCAATTCTCCTGTGCAGCTGGTTATAAACTGAAAGGCACAGCTGAGCTCAACTGCAATTCATCAGGTGCATGGAATGCACCTCTACCTTCCTGTGCAGCGGAGTGTTTTCCCCTTCTGTTGTTTGGTGGTAGACTGATAAACTGCACTGAAGCACATGACAGCTCTAGGTCTGCCTGTACAGTTCAGTGTCCTCCTGGTCATCTGCTGCTGGGTTTTTCTCGGTTTTCCTACAGAGCTGACGATACATGGGAATGTGCATATCCAATGATGTGTGCAA

Function

symbol description
selp Predicted to enable oligosaccharide binding activity and sialic acid binding activity. Acts upstream of or within hematopoietic stem cell migration to bone marrow and hemopoiesis. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane and extracellular space. Is expressed in head; trunk; and vascular cord. Human ortholog(s) of this gene implicated in IgA glomerulonephritis; atopic dermatitis; cerebrovascular disease (multiple); and coronary artery disease (multiple). Orthologous to several human genes including SELP (selectin P).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0035701 hematopoietic stem cell migration biological_process
GO:0097241 hematopoietic stem cell migration to bone marrow biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
ko04514 Cell adhesion molecules
ko04613 Neutrophil extracellular trap formation
ko05171 Coronavirus disease - COVID-19
ko05150 Staphylococcus aureus infection
ko05144 Malaria
ko05417 Lipid and atherosclerosis
ko04515 Cell adhesion molecules
ko04090 CD molecules
ko00536 Glycosaminoglycan binding proteins
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-110107-2 Predicted to enable oligosaccharide binding activity and sialic acid binding activity. Acts upstream of or within hematopoietic stem cell migration to bone marrow and hemopoiesis. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane and extracellular space. Is expressed in head; trunk; and vascular cord. Human ortholog(s) of this gene implicated in IgA glomerulonephritis; atopic dermatitis; cerebrovascular disease (multiple); and coronary artery disease (multiple). Orthologous to several human genes including SELP (selectin P).

Ensembl:

ensembl_id ENSDARG00000042138 ENSDARG00000096672 ENSDARG00000096787

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035885 False 587 processed_transcript 0.39 3 33948642 33951690
TCONS_00035886 False 2611 mRNA 0.47 14 33948642 33959815
TCONS_00035887 False 2790 mRNA 0.46 16 33948642 33961697
TCONS_00035888 False 473 lncRNA 0.32 1 33961587 33962059
TCONS_00036893 False 1284 lncRNA 0.30 1 33961587 33962870
TCONS_00035889 True 834 mRNA 0.45 4 33962828 33966148

Neighbor

gene id symbol gene type direction distance location
XLOC_018217 atf6 coding downstream 38770 33809434 ~ 33909872 (-)
XLOC_018216 fam102bb coding downstream 158639 33752967 ~ 33790003 (-)
XLOC_018215 NA coding downstream 213368 33734853 ~ 33735274 (-)
XLOC_018214 NA coding downstream 220269 33725892 ~ 33728373 (-)
XLOC_018213 NA coding downstream 226437 33720994 ~ 33722205 (-)
XLOC_018219 sele coding upstream 3282 33969430 ~ 33976937 (-)
XLOC_018220 scyl3 coding upstream 46423 34012571 ~ 34028969 (-)
XLOC_018221 tprb coding upstream 73133 34039281 ~ 34069956 (-)
XLOC_018222 pdcb coding upstream 118183 34084331 ~ 34090740 (-)
XLOC_018223 ptgs2b coding upstream 155670 34121818 ~ 34127415 (-)
XLOC_017928 CU539064.1 misc downstream 23894941 10053405 ~ 10053701 (-)
XLOC_018212 NA non-coding downstream 231574 33713540 ~ 33717068 (-)
XLOC_018211 NA non-coding downstream 237387 33708118 ~ 33711255 (-)
XLOC_018224 NA non-coding upstream 166422 34132570 ~ 34147596 (-)
XLOC_018225 BX248238.1 non-coding upstream 185585 34151733 ~ 34153001 (-)
XLOC_018229 NA non-coding upstream 535622 34501770 ~ 34502671 (-)
XLOC_018230 NA non-coding upstream 549360 34515508 ~ 34536019 (-)
XLOC_018231 NA non-coding upstream 679799 34645947 ~ 34650661 (-)

Expression


Co-expression Network