XLOC_001822 (zfyve16)


Basic Information

Item Value
gene id XLOC_001822
gene name zfyve16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2975974 ~ 3026523 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003631
CACCGGTTGGAAATGGTCGCTCGCGCAGGCGACTGGAATTTACTGAggaaaaagaaaacattagccaGATGCTAACAGTGAAATACAGATTTCGTCTGAAAACAACAAACGGAGACGACGGGACAATGACACATGTTAAGTTTTTCTGCAGGGCTAAGTGAGGTGTATCATACCCCCGTCCTAGGATGGACAGTTATTTTAAGGCTGCTGTGTGCGACCTGGACAAGCTTTTGGATGACTTTGAACTCAGTGCAGaAGAGCTTGAGAGCAAACCGGGCACGTATGTAAGCCCTCCTTGTCCGGACTCTACGCTCATCCCTGGTCGCTTTATACCAGAGCAGCACACAGTCCCACAAACACTCCCAGATGTCAACGCACTGCACTATGGACTTACATCGCAAAGTATTGACTCAAACCAAAAAGATTCCTATTCAAATGAATGGCCCCTCACAGGTGTGGACCTCTTGTCGTCCGTTGATAGTAGAGGCATCAAAAGTTCAGCTCCTCCTTGTCCTGACCGCTCGCTGAAGCCTGTGTGTGACCTGGTGAACGATACTGGTTCTGCAAACCTCCAGCAAGCTGATAGTCAGGAAGACTTTAAAGAGCTGGACATTCCAGACGTACAATCGACTGAGGGGCTGCTTGTGGACTTTGAGAGTCCAGAAGATCTTTCCAAACCCAGCCACAGTGAAATACTCAAACGTGACTCTGAGATTAATTGCAATTCCCTCAGTTTGCTGGATGTCATATTACCGGTTGTTGGCGAGCCTTATACTTCGAGTAGCATTACACTTTTGGAGACTGAAAGTTCCTGTCCTGAAGCCTCTAACTCAAACGGGCAGAATGATCGTCCGTGGAGTCAGATGGACGAAGATGATGTTTGTAACACATGTCCTAGTACTACAGAGGAAAATATTTCAGCATTCAGTGAAGAGCATGCTGTGTCGCTCCAGCCCGACTCAACATCTGAAGATGTCAGAAATCCAGAGGATTTAACTGGAAGTCCCACTTCGGAGAAGGAATCTTCTCTGTCTTGCTTGCCAATGGCTGTATCTATGTGTGGTTCCCTTGTGGCGACTTTAGACCCTCAAAAGGCAGCAGTGGTCGAAACCAAAGATGAGGCTGAACTAGAAACAAAATCAGCAATTCAAGAAGCTGAAGAGTTAACTCTTCCATTAGAAGAGCCAGTGCCTCCATTCTCCTCCAGCAGGCCTGATTCTTCACCTGAGGATGAACCTGAGATTGTCCAGATCATGTCGAACCCTGCTGCTGCAGGCCACTACCCTGAAAGAAACTTCAAACGCACCTTATCGCCAACGGACAAATTAACTTGTAGAGATTTGGGTGCAAGCAATCCGTCTCCATCCTATTCAGAAAGTCCAAATTATTCGTACGAGTTCGGTATTGCCAACGATTACCTACCTGAAAGCGACCAGACAGTGATGATGGTCACGGACGAGGAACTTGATGCCTTTCTAATGGGTCAAGGTGTGAAAATCAACCCCGATGCAGCGGTGGAAAAATTCAGTGATGACGGCTTTTCAGAATTTAATGGAAATGCTGAAAGAGATGGCTTCTTGGATGAGGAGTTGCAGAGTTGTAAAGTCGAGACTTTTGCCTCACCTGAGAGTGATGGCTCACAGTATCTGGAGGAGAGCGAAGGGTCAAACGTTTCCTCTTCATCTCAAGACAGCAGCCCGCTGAGAGCAGACTCTACTCAAACAATTACTCATGAAACCGTAACCAGCCCTGTTGAGATTCAATCCGTTTGCTCCCCGAACCAAGAGTCAACTTACGGTGGTGCAAGACCAAAGCAGTTGTCCAACCAAACCGTACGGCCTCCATCAGAACGACACAGAATCAGCCATGCCGAAGCCGATGTGGGAGGATCAGCGAATGGCTCGCAAGTGTCTCCTAACCAAGATGAAATCAACTGTGAACCACCGTCCTATCAGCAGTATGATAGCAGCTATGGCTGCGATGAGCTCTCGGAGCCTCCGCCTTACCCAGGAGAGATGTTGGAGGACGGGGAGTCATCTGTTGATCTGTCTGGACATGGGGCTGAAGGTTTGGGGTCAAAGCAGCCACCCTGGGTCCCTGACTCTGAGGCTCCTAACTGTATGAATTGTATGCAAAAGTTTACCTTTACTAAGAGGAGACACCATTGCAGAGCTTGTGGAAAAGTTTACTGTGCCAGCTGCTGCAATCGCAAATGTAGACTGAAATATCTGGATAAAGAGGCCCGGGTTTGTGTCATCTGCCATGTTACCATACAGAGAGctcaAGCCCATGAGAGAATGATGAGCCCCACTGGGCCCAGTCCCAATCCCAACATCCCATCAGAGTACTGCTCCACCATACCGCCCATGCAGCAGGCCCGCGCCGCCGGGACTCTCAACTCTCCCCCACCCACCGTCATGGTCCCCGTGTCTGTCCTCAAACACCCCGGTAATGACGgTTTTCCACGCGAGCAGAAGCATGTGTGGTTTGCCGATGGCATCCTGCCGAACGGTGAGGTAGCCGACACGACCAAACTCTCTGTGCAAACACGAAGATCTTCTCAGGAGTCGAGCCCAGTAACGCCAGACCCGCCGGCGCCTGACGATAAGTTTCCGGATGAGCGTGAGGAGAGTGTTGGAGGCAGATCTGACAGCCCTGTGGAGGCGAGCCGTCCACCCGTCAGAGGCCCGTGGGATTACGGTCTGCTGTGCGGCGTGGGCAACTGTGTGCAGAGAGATGCCAGTCTGGTGCCAGAGGATGATGACGGTCTGCCGCCACTTCTCATTATCACCGGAGAGGAGGAAGAAGGGGATTTATTGGTCGAGGAACGTCCTGCTGCTTgccaaatattgctgctgttggaggAAGGAGGTCCACAACCTCTCACCTTTGTGCTCAATGCCAACTTATTGGTGAACGTCAAGATcgtcacatATTGTGGCAAGAGGTGCTGGTGTCTGAGCTCTAATGGTCTGCAGGGAGTTGGACAGAAGGAGCTGGTGTTTATAATTGAGTGTCTCCCAGAGGAAAACAGCCTGCCTCGAGACGTATTCAACCTGTATGTTAGCATATACCAAGATGCACAAAAAGGGAAGTTCATCGAGCATCTTGGCAATGTGACATTCACGGATAGTTTCTTGGGTAGTAAAGACCACGGGGGCGTCCTGTTCTTCACGGCTACCTTTCAGCCGCTGGAGGGTCTCGCTCTGCCACAGGTCTCCTTCCTCTGTGGAGTTTTGATTCAGAAGTTAGAGGTTCCCTGGGCTAAAGTCTTTCCCCTCCGACTGCTGCTGGCTCTGGGGGCAAAATATAGTGtGTATCCCTGCCCTTTGATGAGCATCCGTTTCCGTGAGTCAGTTTTTAAAGAGACAGGACACACCATCATGAATCTGCTCACAGATCTGAGGAACTACCAGTACAGTTTACCTGTGGTGGAAAGTCTTCGGGTGCACATGGAGATGGGAAACAGCTACATCGAAATTCCCAAATCCAGGTTTAACGAGATGCTGAAGGTGGTGAACTCCTCCAATGAACACGTCATCAGTTTTGGTGCCTGTTTCAGCACTGAGGCCGATTCTCACTTGGTTTGCATTCAGAACGAGGACGGAAGTTACCAGACAAGCGCTAACAGCATACCAGGAAAAACCAGGAGAGTGACTGGAGCTAGTTTTGTGGTTTTTAACGGCGCTCTGAAAGCATCATCAGGATTCATCGCCAAATCCAGCATTGTGGAGGATGGGTTAATGGTGCAGATCCCTCCAGAGACGATGGAGGGTTTGCGACAGGCACTCAGGGACCAGAACGACTTCCAAATCCCCTGTGGAAAGACTGACTCGGAAGAGACACGGGAAAATGTGAATGTGCGCTGGGTCGACTGGACAGCACCTGTCAACGCTGGAGTCACCAGTCCAGTGGACGGCAAGTCTCTGGAGGGAGTGTCCAGCGTGAAGATCCAGCAGGACTCTGAGTTCGAGATGGATGGCCGAACCATCAGGTGTACTGAGGTCTTCTATTTGCTGAAGTCTTCAGACGTGTCCCTGCCTGCCATCCTCACATCATCAGCTCAGTTTCAGAGAGAGATCGCCACCGCCAGCTGTGCCGCCCTCTGCCCGCATCTCTCCGTGCTCATGGCCAATGGATTCAACTCTCTTGCACTCCGAGTCTCCACTGACTCAGACATGGTCGAGTACCAGGCTGGATCTTCTGGCCGCCTCCTGCCTCAGAAATACATGAACGATCTGGACGGGGCTCTAATTCCTGTCATCCACGGAGGAAGCTCCTGTGTACCCCATCAGGCCATGGACATGGAGTTTTTCTTCTACATCTCACTGAGCATTTGATCACTGGTGACTTATAAACTTTCCATCCACAGAGCAGCCAATGGGACTTCACGACCGATACCAATGAGGTGCAGGAGGAGACTCCGTGTCTGCTCTCTGAACAGGTATGGAGAGCTTGAAGAAGCGTTTTAAGGGACTATATTAGCGATCCTTTAGAATAAACCCGGATCTTGGATCAGCAACTCAAATAAAAGCGTGAGAA
>TCONS_00003632
ATGGACAGTTATTTTAAGGCTGCTGTGTGCGACCTGGACAAGCTTTTGGATGACTTTGAACTCAGTGCAGaAGAGCTTGAGAGCAAACCGGGCACGTATGTAAGCCCTCCTTGTCCGGACTCTACGCTCATCCCTGGTCGCTTTATACCAGAGCAGCACACAGTCCCACAAACACTCCCAGATGTCAACGCACTGCACTATGGACTTACATCGCAAAGTATTGACTCAAACCAAAAAGATTCCTATTCAAATGAATGGCCCCTCACAGGTGTGGACCTCTTGTCGTCCGTTGATAGTAGAGGCATCAAAAGTTCAGCTCCTCCTTGTCCTGACCGCTCGCTGAAGCCTGTGTGTGACCTGGTGAACGATACTGGTTCTGCAAACCTCCAGCAAGCTGATAGTCAGGAAGACTTTAAAGAGCTGGACATTCCAGACGTACAATCGACTGAGGGGCTGCTTGTGGACTTTGAGAGTCCAGAAGATCTTTCCAAACCCAGCCACAGTGAAATACTCAAACGTGACTCTGAGATTAATTGCAATTCCCTCAGTTTGCTGGATGTCATATTACCGGTTGTTGGCGAGCCTTATACTTCGAGTAGCATTACACTTTTGGAGACTGAAAGTTCCTGTCCTGAAGCCTCTAACTCAAACGGGCAGAATGATCGTCCGTGGAGTCAGATGGACGAAGATGATGTTTGTAACACATGTCCTAGTACTACAGAGGAAAATATTTCAGCATTCAGTGAAGAGCATGCTGTGTCGCTCCAGCCCGACTCAACATCTGAAGATGTCAGAAATCCAGAGGATTTAACTGGAAGTCCCACTTCGGAGAAGGAATCTTCTCTGTCTTGCTTGCCAATGGCTGTATCTATGTGTGGTTCCCTTGTGGCGACTTTAGACCCTCAAAAGGCAGCAGTGGTCGAAACCAAAGATGAGGCTGAACTAGAAACAAAATCAGCAATTCAAGAAGCTGAAGAGTTAACTCTTCCATTAGAAGAGCCAGTGCCTCCATTCTCCTCCAGCAGGCCTGATTCTTCACCTGAGGATGAACCTGAGATTGTCCAGATCATGTCGAACCCTGCTGCTGCAGGCCACTACCCTGAAAGAAACTTCAAACGCACCTTATCGCCAACGGACAAATTAACTTGTAGAGATTTGGGTGCAAGCAATCCGTCTCCATCCTATTCAGAAAGTCCAAATTATTCGTACGAGTTCGGTATTGCCAACGATTACCTACCTGAAAGCGACCAGACAGTGATGATGGTCACGGACGAGGAACTTGATGCCTTTCTAATGGGTCAAGGTGTGAAAATCAACCCCGATGCAGCGGTGGAAAAATTCAGTGATGACGGCTTTTCAGAATTTAATGGAAATGCTGAAAGAGATGGCTTCTTGGATGAGGAGTTGCAGAGTTGTAAAGTCGAGACTTTTGCCTCACCTGAGAGTGATGGCTCACAGTATCTGGAGGAGAGCGAAGGGTCAAACGTTTCCTCTTCATCTCAAGACAGCAGCCCGCTGAGAGCAGACTCTACTCAAACAATTACTCATGAAACCGTAACCAGCCCTGTTGAGATTCAATCCGTTTGCTCCCCGAACCAAGAGTCAACTTACGGTGGTGCAAGACCAAAGCAGTTGTCCAACCAAACCGTACGGCCTCCATCAGAACGACACAGAATCAGCCATGCCGAAGCCGATGTGGGAGGATCAGCGAATGGCTCGCAAGTGTCTCCTAACCAAGATGAAATCAACTGTGAACCACCGTCCTATCAGCAGTATGATAGCAGCTATGGCTGCGATGAGCTCTCGGAGCCTCCGCCTTACCCAGGAGAGATGTTGGAGGACGGGGAGTCATCTGTTGATCTGTCTGGACATGGGGCTGAAGGTTTGGGGTCAAAGCAGCCACCCTGGGTCCCTGACTCTGAGGCTCCTAACTGTATGAATTGTATGCAAAAGTTTACCTTTACTAAGAGGAGACACCATTGCAGAGCTTGTGGAAAAGTTTACTGTGCCAGCTGCTGCAATCGCAAATGTAGACTGAAATATCTGGATAAAGAGGCCCGGGTTTGTGTCATCTGCCATGTTACCATACAGAGAGctcaAGCCCATGAGAGAATGATGAGCCCCACTGGGCCCAGTCCCAATCCCAACATCCCATCAGAGTACTGCTCCACCATACCGCCCATGCAGCAGGCCCGCGCCGCCGGGACTCTCAACTCTCCCCCACCCACCGTCATGGTCCCCGTGTCTGTCCTCAAACACCCCGGTAATGACGgTTTTCCACGCGAGCAGAAGCATGTGTGGTTTGCCGATGGCATCCTGCCGAACGGTGAGGTAGCCGACACGACCAAACTCTCTGTGCAAACACGAAGATCTTCTCAGGAGTCGAGCCCAGTAACGCCAGACCCGCCGGCGCCTGACGATAAGTTTCCGGATGAGCGTGAGGAGAGTGTTGGAGGCAGATCTGACAGCCCTGTGGAGGCGAGCCGTCCACCCGTCAGAGGCCCGTGGGATTACGGTCTGCTGTGCGGCGTGGGCAACTGTGTGCAGAGAGATGCCAGTCTGGTGCCAGAGGATGATGACGGTCTGCCGCCACTTCTCATTATCACCGGAGAGGAGGAAGAAGGGGATTTATTGGTCGAGGAACGTCCTGCTGCTTgccaaatattgctgctgttggaggAAGGAGGTCCACAACCTCTCACCTTTGTGCTCAATGCCAACTTATTGGTGAACGTCAAGATcgtcacatATTGTGGCAAGAGGTGCTGGTGTCTGAGCTCTAATGGTCTGCAGGGAGTTGGACAGAAGGAGCTGGTGTTTATAATTGAGTGTCTCCCAGAGGAAAACAGCCTGCCTCGAGACGTATTCAACCTGTATGTTAGCATATACCAAGATGCACAAAAAGGGAAGTTCATCGAGCATCTTGGCAATGTGACATTCACGGATAGTTTCTTGGGTAGTAAAGACCACGGGGGCGTCCTGTTCTTCACGGCTACCTTTCAGCCGCTGGAGGGTCTCGCTCTGCCACAGGTCTCCTTCCTCTGTGGAGTTTTGATTCAGAAGTTAGAGGTTCCCTGGGCTAAAGTCTTTCCCCTCCGACTGCTGCTGGCTCTGGGGGCAAAATATAGTGtGTATCCCTGCCCTTTGATGAGCATCCGTTTCCGTGAGTCAGTTTTTAAAGAGACAGGACACACCATCATGAATCTGCTCACAGATCTGAGGAACTACCAGTACAGTTTACCTGTGGTGGAAAGTCTTCGGGTGCACATGGAGATGGGAAACAGCTACATCGAAATTCCCAAATCCAGGTTTAACGAGATGCTGAAGGTGGTGAACTCCTCCAATGAACACGTCATCAGTTTTGGTGCCTGTTTCAGCACTGAGGCCGATTCTCACTTGGTTTGCATTCAGAACGAGGACGGAAGTTACCAGACAAGCGCTAACAGCATACCAGGAAAAACCAGGAGAGTGACTGGAGCTAGTTTTGTGGTTTTTAACGGCGCTCTGAAAGCATCATCAGGATTCATCGCCAAATCCAGCATTGTGGAGGATGGGTTAATGGTGCAGATCCCTCCAGAGACGATGGAGGGTTTGCGACAGGCACTCAGGGACCAGAACGACTTCCAAATCCCCTGTGGAAAGACTGACTCGGAAGAGACACGGGAAAATGTGAATGTGCGCTGGGTCGACTGGACAGCACCTGTCAACGCTGGAGTCACCAGTCCAGTGGACGGCAAGTCTCTGGAGGGAGTGTCCAGCGTGAAGATCCAGCAGGACTCTGAGTTCGAGATGGATGGCCGAACCATCAGGTGTACTGAGGTCTTCTATTTGCTGAAGTCTTCAGACGTGTCCCTGCCTGCCATCCTCACATCATCAGCTCAGTTTCAGAGAGAGATCGCCACCGCCAGCTGTGCCGCCCTCTGCCCGCATCTCTCCGTGCTCATGGCCAATGGATTCAACTCTCTTGCACTCCGAGTCTCCACTGACTCAGACATGGTCGAGTACCAGGCTGGATCTTCTGGCCGCCTCCTGCCTCAGAAATACATGAACGATCTGGACGGGGCTCTAATTCCTGTCATCCACGGAGGAAGCTCCTGTGTACCCCATCAGGCCATGGACATGGAGTTTTTCTTCTACATCTCACTGAGCATTTGA
>TCONS_00003633
TTACCCAGGAGAGATGTTGGAGGACGGGGAGTCATCTGTTGATCTGTCTGGACATGGGGCTGAAGATCCAGCAGGACTCTGAGTTCGAGATGGATGGCCGAACCATCAGGTGTACTGAGGTCTTCTATTTGCTGAAGTCTTCAGACGTGTCCCTGCCTGCCATCCTCACATCATCAGCTCAGTTTCAGAGAGAGATCGCCACCGCCAGCTGTGCCGCCCTCTGCCCGCATCTCTCCGTGCTCATGGCCAATGGATTCAACTCTCTTGCACTCCGAGTCTCCACTGACTCAGACATGGTCGAGTACCAGGCTGGATCTTCTGGCCGCCTCCTGCCTCAGAAATACATGAACGATCTGGACGGGGCTCTAATTCCTGTCATCCACGGAGGAAGCTCCTGTGTACCCCATCAGGCCATGGACATGGAGTTTTTCTTCTACATCTCACTGAGCATTTGATCACTGGTGACTTATAAACTTTCCATCCACAGAGCAGCCAATGGGACTTCACGACCGATACCAATGAGGTGCAGGAGGAGACTCCGTGTCTGCTCTCTGAACAGGTATGGAGAGCTTGAAGAAGCGTTTTAAGGGACTATATTAGCGATCCTTTAGAATAAACCCGGATCTTGGATCAGCAACTCAAATAAAAGCGTGAGAAATA

Function

symbol description
zfyve16 Predicted to enable 1-phosphatidylinositol binding activity and metal ion binding activity. Predicted to be involved in endosomal transport. Predicted to be located in cytosol; endosome; and membrane. Predicted to be active in early endosome membrane. Orthologous to human ZFYVE16 (zinc finger FYVE-type containing 16).

GO:

id name namespace
GO:0016197 endosomal transport biological_process
GO:0005768 endosome cellular_component
GO:0005769 early endosome cellular_component
GO:0005829 cytosol cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0005545 1-phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091116-62 Predicted to enable 1-phosphatidylinositol binding activity and metal ion binding activity. Predicted to be involved in endosomal transport. Predicted to be located in cytosol; endosome; and membrane. Predicted to be active in early endosome membrane. Orthologous to human ZFYVE16 (zinc finger FYVE-type containing 16).

Ensembl:

ensembl_id ENSDARG00000075747

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003631 False 4542 mRNA 0.50 18 2975974 3026520
TCONS_00003632 False 4155 mRNA 0.51 17 2981090 3026318
TCONS_00003633 True 660 processed_transcript 0.51 4 2985044 3026523

Neighbor

gene id symbol gene type direction distance location
XLOC_001821 erap1a coding upstream 54677 2899108 ~ 2921297 (+)
XLOC_001820 ccar2 coding upstream 77572 2876020 ~ 2898402 (+)
XLOC_001819 ykt6 coding upstream 125038 2841205 ~ 2850936 (+)
XLOC_001818 aebp1 coding upstream 137784 2807136 ~ 2838190 (+)
XLOC_001817 pnx coding upstream 174117 2799285 ~ 2801857 (+)
XLOC_001824 rasgrf2a coding downstream 23113 3049636 ~ 3106762 (+)
XLOC_001825 ckmt2a coding downstream 84481 3111004 ~ 3129887 (+)
XLOC_001826 hic2 coding downstream 119184 3145707 ~ 3155957 (+)
XLOC_001827 NA coding downstream 236055 3262578 ~ 3269818 (+)
XLOC_001828 zgc:56235 coding downstream 273306 3299829 ~ 3322338 (+)
XLOC_001815 FP085363.1 non-coding upstream 287293 2688565 ~ 2688681 (+)
XLOC_001807 NA non-coding upstream 471932 2499533 ~ 2504042 (+)
XLOC_001806 NA non-coding upstream 538066 2402308 ~ 2437908 (+)
XLOC_001804 NA non-coding upstream 984506 1966857 ~ 1991468 (+)
XLOC_001803 NA non-coding upstream 1054954 1904355 ~ 1921020 (+)
XLOC_001830 CU570980.1 non-coding downstream 382260 3408783 ~ 3408900 (+)
XLOC_001834 NA non-coding downstream 830544 3857067 ~ 3857885 (+)
XLOC_001839 NA non-coding downstream 1263182 4289705 ~ 4299850 (+)
XLOC_001840 NA non-coding downstream 1288440 4314963 ~ 4318863 (+)

Expression


Co-expression Network