XLOC_018221 (tprb)


Basic Information

Item Value
gene id XLOC_018221
gene name tprb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34039281 ~ 34069956 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035894
GGACGAGGAGGAGTCACCGGAACGAAAAATGGCGGCTGTGTTGCAGCAGATACTTGAGCGGTCGGAGATATCGAAACTCCAAAAAACAGTTTTGACTAAATTAGAGAAGTACATTTCTGAGCAGCAATGTGAAGTTGATGACCTCAAGGCACAACAGGAGCAATTTCGTGTGGATAGCGAACAACAGTATTTTGACATCGAGAAAAAGTTCGCAGAGAGTCAGGCTCAGTTTGTGTCCCAGACTCAAGAACATCAGATCCTGAAAGAGGAGCACTATAAATTGGAGGATGAGCTGAAATGTTTAAGAGAGAACAATAAGGAGCAAGCAGCTTCATACGCCAAACTAGAATCTAAACAGAATGACCTTTCCAAAGCCAAAGATGAGCTCGAAGCAGAAAAAAGAGAGCTGGTCCGTACACTGGAAAGAAGATCTCAGGAGATGGAACACCAAAGCgaGGACCTTAAGCGTCTTAATGATCGATTGGTGGAAGTCAGTGCAGAAAAAATGCAGCTTCAGCTCAAACTGGAGGAGTCAGAAACCTCTGAAGTTTCaatcaagTATAAGGAAAAACGAATGGAGCAGGAGAAAGATCTACTCCAGTCTCAAGTGACCTGGCTGAACACTGAACTTAAAGCCAAAAGTGAAGAACTGCTGTCTCTGTCCCGGCAGAGAGGCAATGAGATCTTGGAGCTCCAGTGTAACCTTAATAACAAGGAGGACGAGATCACCCGCCTTCAAGATCAGGTGACCAGTCTGAAGGCGTCCAATGAGACCTTTCAGAAGCAAGCAGAGGAGATGATCATTAAGATGAGAGAGgcaAAAGAACAGCAAGCTGCTTTGGAAGAAAAGTTCAGTAATGAGCTCAATGCCAACATTAAGCTCTCAAATCTGTACAAGGGAGCAGCAGCTGATGCTGAGGCCAAGAGTGAAGAGCTCAGCAGAGCCGTTGATGAGCTTCATAAGCTGCTTAAAGAGGCTGGAGAGGCACATAAAGATCTGGAAGTGAAGATGGCAGATCTGGAAAGTCATAAGAATAAGGAAATTGCTGAACTTAAAGAGAAAATAagcagccaagaaaaagagcTGGACAATGCCAACGACCTGTTGTCTGACAGCAGACACAGAGGAGCTGCTTCAATTCTTACAGAAGAGCAGGTGACCATAATGTCCCCCACTGCTGCTGCAGTTGCCAAAATGATCAAACCAGGCATGAAACTCACAGAGatctaTACCGCATACGTTGAGACCCAAGAGCATTTACAGCGTGAAAAACTCGAGAACAAGCGACTGCACAAGTACCTGGATGACATTGTGCAGGAAATGGAAGCAAAGGCTCCTATACTGAAAAGACAGAGAGAAGAGTACGAGCGCATGCAGAAATCAGTTTCCAGTCTCTCTGCTAAATTAGAGCAAGCTGTCACGGAGGTACATCGCTTGCAAAAAGAATCGGATGAAAGCAACAAGCGTGCATCAGTTTTGGAAAGAGATAACCAGAGGTTTGAGGTTCAGCTGGCTGACATGGCTCAACAGGTGCGAGTTCTTCTCGTTGAGCTGGAGGAAGCACGTGGTAACCATGTTATGCGGGAGGATGATGATGTGGGTTCGGCAGATGTGAGCAGCACATCGGAGGTTATTTCTCAGCACCTGGTCACTTTCCGTAGCGTTGAAGAGCTGCAGCAGCAGAACCAGCGACTCCTAGTGGCGCTCAGAGACCTTAGTGAGGAAAAGGAGAAGGATGAATTGGAGGGAGACACCATGAAACGCAGTGAAGTGGAAAAATATCTCGAGGAGCTTCAGCGAGAGTTGGAGCAGCTGAAGGAAAAGAGAACTCAAGATCTGCAGAAGGTTGACACTGTGGCACGGCAGAGGGACATGTTCCGCATGCTTCTGACTCAGACTACTGGGGTCACTTTCCCGCAGGGTGCTGGAGCTGAGGAGCTTATGCTGACCTCTACGCCCCGTCGTTCTCCAGCCGTTACACCCACCACTGGCACCCCTACAGCACTGGTTGCCACAGCCATAGAATCCACTGAGTCAGTTGAGGCCAAGGCTGCACTGAAGCAGCTTCAGGAGGTCTTTGTGGcctataagaaagagaaaattgAGTCTGAAAAGGCACAAATTGAGCAAAATGAGAAACTGCAGGATCAAGTTACCGAACTTCGCTCGGAGAACATGAAGATCTCCACACAGCTAGAGTTCACGTCCAAAAGATATGAGATGCTCCAGGATAATGTTGAGGGCTATCGTAAGGATATTGCCTCTCTGAATGAGAAGCTTCAGAAACAGGCTGCAGCAATTCAGCAGAGTGAACAAaccacacacaccctcacacaggACCTACAAGCAGCAGCTGAGAAGCTCTCCATTGCTGAGTCTGAATTGGAGAACCTGCGTAAAGAGAGGGACATGTTGAAGCTAGTTGAGATCAGGCTGACCCAGGAGAAAGAGTCCTTCCAGGCCCAACAGCTTGGCCAAAATATGCTGCTGACCAACCTCAAATCAATACAGACTACTCTAGAGCGCTCTGAGACGGAGACAAGACAACGGCTGACTGCTCAGATTGAAAAGCAGGAGAGAGAGATCACCCAGCTCCAGAAGAGACTTGAGAATGAGGTGGAGCAGAAGCACCTGCTGGCACGGAATCAAGATGTGCAGCTGATGGACACTAAGAAGCAGCTGGAAGCACAGATTGCTCAGCACCACAAGACGAAAGAACAGCTCAGTGCTGCACAGCTTGAGTTAACCAACTTGAGATTGCAGTTGAATAGCGGGGAGAGCCGGCTGGCGTCCGCTGCAGTACATACAGGTCTGCAGGGCAGTGAGAGGGACATGGAGGTTCTGCGTGCCCAGATAAGGCAGACTGAGAACAGAATTGAAGAACTGACAGAGCGACTTAAAAACACTACTGCCAGTATGGAGCAATACAAGGCTATGAGTCTTAGCCTGGAGGAGTCTCTAGATAAGGAGAAGCAGGTAACTGAGCAAGTTCGTTCATCTGTAGAAAACCAAGTGGAGGCAGCTCAGGAGCAGTATAAACGGCTAGAGCAGAAACTGCTGGAAATGGACAAGGAGAAACAGAACTTGCTGGAAGAGAAAAACAAAGCTGTTGCTGCTGTAGAGCAAGAGctAACGGAGCTGAGAAAGTCTCTCAGCAGTGTGCAGGCAGAGCTCCAGAGTGCCCAGGAGAAAGCAGCTGTGGCTGCGGCACAGGAGCAGCAGGCCTTACTGGATGGTCAGGAGCAGGCTAAGATGGCAGCTGAGGCACAAGATAAATATGAGAGGGAGATGTTACTGCATGCGGCAGATGTGGAGGCACTGCAGGCTGCCAAAGCTCAGGCTCAACAGGCTTCTCTTGTCAGACAGCAGCTGGAGGAGAAAGTACAGATCACCAGCGCTCAACTGCTAGAGGCTCGTGTGTCATGGGAGGAACAAGAGAAGATTCTTAAGGAGGAGCAGTGTAAGATCCAGTCCCGCTGTGAAAATCTGCAGAGGCAGAACAAACTCCTCCATGAGCAGATCCAGACTCTGAGTGGACAGATGGCAAGTCAGCTGAAGCGAGCCACCACTGAGAGTCCACTCAACGTCTCCCTGACTGAAGAAGGAAAGTCTCAGGAGCAACTTCTTGAAATACTCAGATTTGTGCGCAGAGAGAAGGAGATCGCAGAGTCTCGGTTCGAGGTTGTCCAGGGGGAGAGTCTGAGGCACAGGCTCAGAGTGGAGCATCTGGAGAGAGAGCTGAAGGATATGCAAGAGAGTCTaaatgcagagagagagaggatgcAGGTGACTGCAAAGACTCTAGCCCAGCACGATGAGCTGATGAAGAAAACTGAGACCATGAATGTCCTGATGGAGACCAATAAGATGCTGAGAGAGGAGAAGGAAAAACTGGAGAAGGAGTTGCAGGATACTCAAGCCAAGATACGTAAACTAGAGTCCGACATCATGCCGGTGCAGGAGTCCAATTCAGAGCTGAGTGAGAAGAGTGGCATGCTTCAGGCAGAGAAGAAACTTCTGGAAGAAGACATCAAACGCTGGAAAGCTCGCACTCAGCACCTGGTGAGCCAGCAAAAAGACACTGACCCGGAAGAGTACAAGCGTCTGCACTCTGAGCGGGAAGCACATCTTAAACGCATCCAGCAACTTGTTGAAGAAACCGGCCGACTAAAAGCTGATGCTGCCAGGAGCAGTGGCTCTTTGACTACTCTGCAGTCTCAAGTGCAGAACCTAAGGGAGAACCTCGGAAAGGTGATGGTGGAGAGGGACAACCTGAAGAAAGACCAGGAGGCCAAAATACTGGACATCCAGGAGAAAATAAAAACCATCACACAAGTTAAAAAAATTGGTCGTCGGTATAAAACACAATATGAGGAGCTCAAGGTTGAATATGAAAAGTTGGTAGCAGCGGCGGCATCTGCACCAGCCCAGGATCAGGAGGCACAGCAGGCATCAGCTCAAGAACTTCAGAATCTTAAAGAGTCCCTCAATCAATCAGAGACCAGGATAAGAGAACTGGAAGGCCAACTAGAGAATCTCAATAGAACTGTAGGAGAGCGAGAAATGGAGGCCCGCAGTGCGCAGGAACAAGCCTCTCGTTTGCAGACAGAGTTAACGCGTCTCAGACAAGAGCTTCAGGAGAAATCATCTCAGGAGGAGCGTCTCAAACAGCAGCTGACTGAAAAGGAGGAGAGGACCAAGAAGGCCATATTATTGGCCAAGCAGAAGATCAGTCAACTTACTGGTATAAAAGGACAGTTTCAGAAGGAGAACGAGGAGCTGAAGCAACAAAAAGAGGAGTTGGAAGTGCGTGTGAGTGCGCTGAAGTCTCAGTATGAGGGGCGTCTGAGCAGACAGGAAAGGGAGCTACGAGACCTTCGCGAACAGCAGGAGAGACATGGAGAACAGAGGGATGAACCACAAGAGCAGGGCTCCAGCAAGACCCAGGAACCACAAAGGACAACAGAACAGCGACAGATTTCTCTGAAGACAACCCCAGCGGCAGAAAGAGGAAGtgctaGCACTTCTGAGCCCCCAACAGCCAACATAAAGCCCACACCTCTGGCAGCAACCCCCAGCAAGCCTCAAGTCATTCCTGGAAACAAATCCACTCCAAGAGCCAGCATCAAACCCATGATCACTCCTGCCCCGGTGCCCACTCCTACACCCACTGCCACAGTCATGCCCACCACACAGGTGGAAAGCCAAGAGCCCATGCAGTCCTCAGAGTCCCCATTGGAGCATGTGACTGTGTATGGCAGTGCCAGTGGTTCAGTAAGGTCCACGAGCCCTAATGTTCAGACCACCCTGGCTCAGCCTCTGCTGAACGTTCAACAGCAGAACCAAGCTACTGCATTCATCCAGCCCACCCAACAACAAACCCAACCCCCTGCTGAACCCTCCAATCAGGAGCCCCCAGCTGCTCTAATGCTGCCAACCTCACAGTTAGATAGGCCTCTTTCTACATCCACAGGGCTCTGGAGCGCCACCCCTAGCACAAGCAGTGCCAGTGCAGTTTCTGCATCTCCTGGTAGTGCCTTAAGCAAGCGCCCCCGTGAAGAGGAACAAGAGAGCATGTCTGCTGACACACAGTCCCAAGATGAGCCCAATGACTCTCCCACTTGCAAAAGGCTCCGAATCCATAGAGTGGGGTTGGAGGAAGAGATGTTGGCTGAGGACAGCACTGAGGCTGAAAGCGTTGTACCGGGTGAGATCCAGGAGGCTCCTGATGCTGGACAGGAGCTGGAGAACTACTCTACTCTGGAAGAAATGGATGAGGAACCAGGACCATCTCAGTCTGTCCCTGGAGATCGAATGCTGCCCCATCCATCTGAGACCCATCGAAGCCCAGAGGAGCCCGATCACCACGTCATAGTCATTGTTAGTGACACCGAGAGCGAAGGAGAACAGGAAGAGGAgtctgaggaggaggaggaggaagaggaagaagagcAGGATTatgaggaggaggatgaggaagaggaggaagaagatgatgatgatgatgaagaggatggAGGGATTGGGGAAGAGGGAGATGAAAGCAATGAGGAGAGTAGAGACGACAATGAGGCCTACGAAGGAGATGACACAGAGGGCCCTGATCCCACTGATCCGGGCACTGAGACAGAAGAAAGTCTTGGAGCGACAGACTCCACTCAGCGCATGGCAGATTCCCAGAGCTTTGAATCGAACACATTGGAAATGTTTGAAGTCCCCGTCACCAGCTCCGCCCCTCGACCTCCACAATCCCCCAGAAGGCCTCAGCATCCTCTGCCACCTCGGCTAAACATTTTGGCTGCTCCTGCTCAGGAACTCGGGCCTCCTGCTCAAGTACAGCGTCTTCCAGCTCGCCGGCAGTCAGTGGGACGAGGCCTTCAGCTTGCTTCTGGAATGGCCAGTAGTGCACAGCCTTTCTTTGAGGATGATGACAGGATGGTTCCCAGCACTCCTACACTTCCTCTTCGCTCTGATGGATTTGCAGAAGCCATACATTCTCCACAGGTGGCAGGTGTACCACGCTTTCGATTCGGGCTTTTAGATGAGCTCCCGCAGACCAGCTCCTCTCACTCAGACCTCAGTCAGCTGCCCTCACAAGGTTTAGGCATGTATGAGAGCTCTGTTTTTTTGGGATCTCATGAGGATGAGTCAGGGGGACGCAGTGTACCCACAACCCCTCTGCAGATCAGCGCTCCTGTGACAATTCTCTCAGAGGCTGCTGTATCTGAAGCGAGTGAACATGCTTCTCAGTCTGTGCCGATGGTGAGCACCTCTACCCCAGGCCTCAGTGCTCCAGCAGTGGAGGAGAGAGACGACATGTTCCTGGATGCAGGAGACAGTGCTGAAGCTTCACTTGAGGCCGTGTCTCAGACTGAGGCAGAAGAAGCAGCGCAGCCTTCAGATGATGCAAATCTGCCTTCAACAAGCCAGGAACCATCATCTAGTTCAGCAGACACAAGCAGCTCTCAGCCTCCTAAAGCCAGGAGCGGCTCTGGCAGACAGTGGACTGGTAGTCGAGGTTCTAGAAGCATTGTGAAGAGGGATGGACTGAGTGTTATGGGTGTGAGAGGACGCTTTGCCAGATGAAGCAAAATCCCAGCAGTCTTCATTCTAGTCTTCATCCTGAACTATTGGCTCCACAAGAACAGCTGTGCTTTATTCTGCTTCAGGACTTCAAGTCAGTGTATTATAGCTGTCGTTTGTTAGTTGTATGCTCTGAGCAAtccattgttgttatttttaatgattctacatccataaaataaattgttttgaagaaagaga
>TCONS_00035895
CTCTGATAATAACACACTCATTCAAAAGCGTATGACTTGGACTAACATTCTCAGCTTGAGAAAATGAACCACATATGCACTTTCCTCTAATTCTACTTTTCCCCTCCTTTCTACTACCTTTAATTTTTCCCAGGGCCCTGATCCCACTGATCCGGGCACTGAGACAGAAGAAAGTCTTGGAGCGACAGACTCCACTCAGCGCATGGCAGATTCCCAGAGCTTTGAATCGAACACATTGGAAATGTTTGAAGTCCCCGTCACCAGCTCCGCCCCTCGACCTCCACAATCCCCCAGAAGGCCTCAGCATCCTCTGCCACCTCGGCTAAACATTTTGGCTGCTCCTGCTCAGGAACTCGGGCCTCCTGCTCAAGTACAGCGTCTTCCAGCTCGCCGGCAGTCAGTGGGACGAGGCCTTCAGCTTGCTTCTGGAATGGCCAGTAGTGCACAGCCTTTCTTTGAGGATGATGACAGGATGGTTCCCAGCACTCCTACACTTCCTCTTCGCTCTGATGGATTTGCAGAAGCCATACATTCTCCACAGGTGGCAGGTGTACCACGCTTTCGATTCGGGCTTTTAGATGAGCTCCCGCAGACCAGCTCCTCTCACTCAGACCTCAGTCAGCTGCCCTCACAAGGTTTAGGCATGTATGAGAGCTCTGTTTTTTTGGGATCTCATGAGGATGAGTCAGGGGGACGCAGTGTACCCACAACCCCTCTGCAGATCAGCGCTC

Function

symbol description
tprb Predicted to be a structural constituent of nuclear pore. Predicted to be involved in mRNA export from nucleus and regulation of mitotic spindle assembly. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in nucleus. Predicted to be part of nuclear pore. Is expressed in liver. Orthologous to human TPR (translocated promoter region, nuclear basket protein).

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0006406 mRNA export from nucleus biological_process
GO:1901673 regulation of mitotic spindle assembly biological_process
GO:0005643 nuclear pore cellular_component
GO:0017056 structural constituent of nuclear pore molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6410 Predicted to be a structural constituent of nuclear pore. Predicted to be involved in mRNA export from nucleus and regulation of mitotic spindle assembly. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in nucleus. Predicted to be part of nuclear pore. Is expressed in liver. Orthologous to human TPR (translocated promoter region, nuclear basket protein).

Ensembl:

ensembl_id ENSDARG00000016630

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035894 False 7285 mRNA 0.50 50 34039281 34069956
TCONS_00035895 True 731 lncRNA 0.52 6 34042003 34045225

Neighbor

gene id symbol gene type direction distance location
XLOC_018220 scyl3 coding downstream 10312 34012571 ~ 34028969 (-)
XLOC_018219 sele coding downstream 62344 33969430 ~ 33976937 (-)
XLOC_018218 selp coding downstream 73133 33948642 ~ 33966148 (-)
XLOC_018217 atf6 coding downstream 129409 33809434 ~ 33909872 (-)
XLOC_018216 fam102bb coding downstream 249278 33752967 ~ 33790003 (-)
XLOC_018222 pdcb coding upstream 14375 34084331 ~ 34090740 (-)
XLOC_018223 ptgs2b coding upstream 51862 34121818 ~ 34127415 (-)
XLOC_018224 NA coding upstream 62614 34132570 ~ 34147596 (-)
XLOC_018225 BX248238.1 coding upstream 81777 34151733 ~ 34153001 (-)
XLOC_018226 hmcn1 coding upstream 87352 34157308 ~ 34292607 (-)
XLOC_017928 CU539064.1 misc downstream 23985580 10053405 ~ 10053701 (-)
XLOC_018215 NA non-coding downstream 304007 33734853 ~ 33735274 (-)
XLOC_018214 NA non-coding downstream 310908 33725892 ~ 33728373 (-)
XLOC_018213 NA non-coding downstream 317076 33720994 ~ 33722205 (-)
XLOC_018212 NA non-coding downstream 322213 33713540 ~ 33717068 (-)
XLOC_018211 NA non-coding downstream 328026 33708118 ~ 33711255 (-)
XLOC_018229 NA non-coding upstream 431814 34501770 ~ 34502671 (-)
XLOC_018230 NA non-coding upstream 445552 34515508 ~ 34536019 (-)
XLOC_018231 NA non-coding upstream 575991 34645947 ~ 34650661 (-)

Expression


Co-expression Network