XLOC_018227 (swt1)


Basic Information

Item Value
gene id XLOC_018227
gene name swt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34343649 ~ 34388331 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035904
GTAGTACAAGCGGTGTGGAGAAGTGAGCAGCTCTTAAAGATATTAATATAGTTTTCTACTCTTATTGTCATTCAGTTTCATATTTAACAACACTCATCTCGGTAggtaaacctttttttttgttgaaggGAAAACAACTAAAGCACAAAACGTTAGTAGATTCTTGAAGTCCTTCAGCGTCACAGAAGACTGTAAGTTGTAAACATTTAGGGTTTTGGCGATGGCTAGCAAGAaatcaaaaaagaagaaaaacaaaaaggagGAAAAACTCTCAAGTCGTTTATATGAAGATGAGAAGGAGGAGAGAGACACAAAGCGATGTATCAGCTCAAAAAGCAAGCACAAACATCATCATTGTGTAAGTTTTGATAAAGATGAAGCAAAAGGGAGAAGGGCCACTGTCTCATTGCCAGAGAAAACATTTGAAGCAATATTGAACCAAACAGATGCTGGAGAAAGCAAGAGCAAAAAGAAAAGatccaaaattaataaaaacaaaggaacagAGAAATCCAAACCAGTTCTTAATTTGCCTAATAAACATGAGAAAAAATGTGTGAATGCTAAAGACAAGCATAAAAATGCAAGTCCTCAAATCTCTAAAAACAAGGCTAAAAACCAGCCTTCCTCAGAAGAAGCttcaaaaaagagagaaaagttGGTGTCAAGAAAACCGCCATCAGAGGATCTCAGGTGGACACTTGCAAAGGATGACTGTTTAAAACTCCAGCAGAGAAGAATGAAGCCTGTGAAGCGCCGCTTGTCACAAGAGCTTCATGCTCAACCCAAACGAAGAAATATCAAAAACGGGACCGATGTTGCACAAACAAACTGTCAATTTAAATCTCCAACAGAAATGAGGAAAAAATTGGTGGGAAAAAGGTCCAAAAAGATCAACCAACCTGCTGGTGCCATCTTGCAGAATTCTCCTGGTAAAACCATGAAAAACAACTCAAAAGCAGCTATGTCAGCAGTGAAACATGTAAGATCCAAACTAAAACTACTAGAAGACATTTCACCCAAGAAGAAAGACCGCGCGAAGCAGAGGAAAACACTTGGTGTACTTTTAGGAGAAAAAAGTCCATCCTTTTGTGGATCTATAGCAAACACCAAATTCAAGATCCCAAAGTTACCCAGTGCTGTTaaagctcagacaaacacaaatttatttaatgtgaattCTTCAGATAGTAGGACTCAAATTACCACTCAGCCTTCTCTCCCTGGTTCTTCTCCAGCTAAACCCCAAAATTTCCTCTTGAGGCAGCAAATGCAGAAGCCTGAGGAGGTTTCTTCTCAAACCTCTTATGAACTCTCTTCTCTTTGCTCGTCACATCATTCATATGTATCACGCCAAGTCCAGCTGGTGTACACAGACGATAAAGGAGAGGTCACAATGACGGACGGTGCTTCTCACAATGATCAACATATATCGTCCCAAAAAGCTCCCAAAACCTACGACTTTGATCATGAGgTGCATCTGGTGGAGGAGCTTAACCTGGCACGCTCTGAGAGGCGACTGGAGGTCAATGTGGAGCAGAACTGTGGAGAGCTCACCTGCATGGACATTGATCCTCCAGAAGAGGGTGCCAACACCATTCTAAAAAAGCAAGCCCTCCTTATTGTTCTGGACACCAATGTGCTGCTCAGCCACCTGGAGTTTGTAAAGAAGATAAGATCACGTGGATTTGGAGGTCTGGGATTCCCAACATTGCTGATCCCGTGGGTGGTACTGCAGGAACTGGACTATCTAAAGAGTGGTAAACTCTCCAGCAAGGTTGAGGACAAAGCCAGGCCGGCAGTCCACTACATCTACAGCTGCCTGAAAAACCAGGAGCCCAGACTTATAGGCCAGTCAATGCAGCTGGCCTCCCAAGCTGACTGTGGACCTGGTGTTGTTAATAATGATGATAGAGTCCTGCAGTGCTGTCTGCAGTACCAAGCTCTGTACCCAGAGGGAGCTCTAGTTCTTTGCACCAATGATAAGAACTTGTGCAGCAAGGCTCTGCTCAGTGGGGTTAAGGCCTATAGTAAGGCAGACTTGGTAATTGAGGCAGAGGGAACCACATCCAAAATCTTTGAACCAGATCAACAATACATCTGTGCTCGCCCTGCTGTGATGTCCCCAGCTGGACCGGTAGAGAAAGACAACAGCAATAGCATTGTGGTGGATGAACAAGATTTGATCGAGTATGTGTCTTTGCTGGAGTCCTCCCTTCAGGCGGCGCTCTCTGAGGTACTAACGGAGGAGATGAAAGCAGCCTATGGAGACCTGTGGATTGAGATAGTGTATGTGAAGCCTCCCTGGAGTCTGGAGGGGCTGCTGAAGTGTTTTAAGAAGCACTGGATCGCCGTCTTCGGACTCATTATCAATAGAAGCCTGCTCAGCTGTGTGGAAATGCTCAGTGACTGTCTCTGTTCAGACAGGTCTGTAGAGCACACATCTATTCTTAGTGCTGTGAGTTTGGCTAAAGAGCTGCTGTCTGCACTGTCTGGCAGATCTCAGTACAGCGGTCACGTAGCCCATGCTCTTTCTACACTTCATACACTACAGCAAAGATTACAGTCTCCAAAAGCTCTATTAGAAAGCGGCGAAGCTGATAATGAGGACTCTCTGATGGCGGAAATAGAGGATGATGTAGCTTTACCTCCTTCCACATCCCATCAGGAGGTTTGGGCGTTGTTTGAGAGCATCTGGAACAACGTGTGTCAGATAAGTTCATCTTTGTTCTCAGCACTCCACTATACTCCAGGAACCACTGAGCCCAGTCTGCGATCTACCTCACCCCCACCTCAGGAAGCTCTGTCATGCCTACAAAGACTCTCCACTGCACTAAAACAGCTACTGGAGGCTCTTCAGAGGCTGCTATCTGCAGACAGCAGTGTTCAGGATGCACAGTCACTTCTGTCCTTCATTCAGACTAGTGAGATTGCTGCCATGGAACCACGTTTCACTGCCAAGAGCCTGTTTGACTGCGTGTCTCAACAGGAATACCGggAGAAGCTGTGTGTGGGTGGAGCGCAGCTGTCTGAGCTGTGTGTGAATCTGGATCAGTGTGCTGCTGCTGCAAGATCCTGGCCCTGATTTATCACCACACACTTTCCAGGTTTGGACTCAGACAAGACTCTTTTGGACTGACCTCGTTTTGCAGACTCATAATCTACTGGAACCAAACCTACTGATCTCTCCGTCACTGTGTCATTCACATGACTCTGACGCATTATGCATCTCAGAATAAAGGGCTGTCGGTCAGAATAGATGAGATCCTACGTTTTAGTTAGAAGCTTCAGTATatttttaattgctttatttatttttgtcatgtttaCTTCAAGTTTTATATACTTATAAAATATAAGTATATGTCACTTTCTGGGAAAAAGAAACGTTTTAGTGATAATTAAAAATGGTTTTAGGTTTGCTGTTGGTTTTGGTTGGTTATACTACATAGAAGTCGAGAGACAATTGATTGTTATAAGAAATCCTTCTGATGTCCCTGAGCTGTTGTGGTAACAGGTTAATGTTTGCTCTGAGAGTTATGAAGGTATTTATGACCCTGTTAATTTTTCTCTTTATGTCTATTAGCTCCCCTATAGAAACTATCCTGAAATCCCTTAGTTTGTTTCACAATTCTAAGGTATGATTTGTCCCAAAATCGTTTAAAATAGACTTTTTAAGTCTAATAAGCtgctattttttattcttatctaGCTCTGCACATGCACTAAATGCCAGTATACATGAACCTCAACATTATAATTCATGACAGATTATTTTGTAttaagatttcatgtgaagtggtatcagtggcactgttctcTTTGTAATAATGTGTATAGAGTTTAAaagaataatatatttttgtttacatttttttattttgtattttgaataaataatttgattgcaAATGCTA
>TCONS_00035905
GGCTACTGTAGTACAAGCGGTGTGGAGAAgGAAAACAACTAAAGCACAAAACGTTAGTAGATTCTTGAAGTCCTTCAGCGTCACAGAAGACTGTAAGTTGTAAACATTTAGGTGAGTCAAGGGTTTTGGCGATGGCTAGCAAGAaatcaaaaaagaagaaaaacaaaaaggagGAAAAACTCTCAAGTCGTTTATATGAAGATGAGAAGGAGGAGAGAGACACAAAGCGATGTATCAGCTCAAAAAGCAAGCACAAACATCATCATTGTGTAAGTTTTGATAAAGATGAAGCAAAAGGGAGAAGGGCCACTGTCTCATTGCCAGAGAAAACATTTGAAGCAATATTGAACCAAACAGATGCTGGAGAAAGCAAGAGCAAAAAGAAAAGatccaaaattaataaaaacaaaggaacagAGAAATCCAAACCAGTTCTTAATTTGCCTAATAAACATGAGAAAAAATGTGTGAATGCTAAAGACAAGCATAAAAATGCAAGTCCTCAAATCTCTAAAAACAAGGCTAAAAACCAGCCTTCCTCAGAAGAAGCttcaaaaaagagagaaaagttGGTGTCAAGAAAACCGCCATCAGAGGATCTCAGGTGGACACTTGCAAAGGATGACTGTTTAAAACTCC

Function

symbol description
swt1 Predicted to be active in nucleus. Orthologous to human SWT1 (SWT1 RNA endoribonuclease homolog).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041015-373 Predicted to be active in nucleus. Orthologous to human SWT1 (SWT1 RNA endoribonuclease homolog).

Ensembl:

ensembl_id ENSDARG00000094010

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035904 False 3917 mRNA 0.42 18 34343649 34388324
TCONS_00035905 True 639 mRNA 0.38 5 34383196 34388331

Neighbor

gene id symbol gene type direction distance location
XLOC_018226 hmcn1 coding downstream 51042 34157308 ~ 34292607 (-)
XLOC_018225 BX248238.1 coding downstream 190648 34151733 ~ 34153001 (-)
XLOC_018224 NA coding downstream 196053 34132570 ~ 34147596 (-)
XLOC_018223 ptgs2b coding downstream 216234 34121818 ~ 34127415 (-)
XLOC_018222 pdcb coding downstream 252909 34084331 ~ 34090740 (-)
XLOC_018228 kifap3a coding upstream 32292 34420623 ~ 34453623 (-)
XLOC_018229 NA coding upstream 113439 34501770 ~ 34502671 (-)
XLOC_018230 NA coding upstream 127177 34515508 ~ 34536019 (-)
XLOC_018231 NA coding upstream 257616 34645947 ~ 34650661 (-)
XLOC_018232 slc25a24 coding upstream 265585 34653916 ~ 34670236 (-)
XLOC_017928 CU539064.1 misc downstream 24289948 10053405 ~ 10053701 (-)
XLOC_018215 NA non-coding downstream 608375 33734853 ~ 33735274 (-)
XLOC_018214 NA non-coding downstream 615276 33725892 ~ 33728373 (-)
XLOC_018213 NA non-coding downstream 621444 33720994 ~ 33722205 (-)
XLOC_018244 BX510920.3 non-coding upstream 1122534 35510865 ~ 35510980 (-)
XLOC_018246 BX510920.2 non-coding upstream 1152951 35541282 ~ 35545194 (-)

Expression


Co-expression Network