XLOC_018228 (kifap3a)


Basic Information

Item Value
gene id XLOC_018228
gene name kifap3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34420623 ~ 34453623 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035906
GCCCTCTTTCACGGAAACACAGTACACACCCATAGCAACACAAACATCAGCATCCTGTCAGAACAGAAACGATGAAGCAGTGCAGACATTAGACCAACAACATCAAAACATCTGACAGAAATCAGCCGCGCagctttatttacttattattcagCCGGCAATGCAAGCGGACGACGCCAGATATTTAAAACGGAAATATAAGGGTGGTAGTTTAGATGTCCACCCCACAGAAAAAGCCCTGGTTGTCCAGTATGAAGTGGAAGCCACGATCTTGGGTGAGATGGGAGACCCAATGCTGGGAGAACGCAAGGAGTGCCAGAAGATAATCCGTCTGAAAAGCCTGAACTCTAACACGGACATTGCATCGTTAGCAAGAAAGGTCGTGGAGGAATGTAGACTCATTTCCCCCTCCAGACTTCCTGAGGTGGAACAGCTATTGTTCTACCTGCAGAACCGCAAAAAATCTGCTGAAAAGAAAGAGAAGAAACAAATCAAGCCAAGAGATCTGACTCCTTTTGAGGGCATGGAGTTGGAAGAGGAGGCCAACATTAATAACATAGATGACTATGTTGAGCTCCTGTATGAAGACATCCCTGAAAAGATCAGAGGAGCTACACTTATACTTCATTTGGCCCGTAATCCTGACAACCTGGAGGAGTTGCTGCAGAACGAGACGGCTCTAGGCGCGCTGGCCCGGGTCTTGAGGGAGGACTGGAAGCAGAGTGTCGATTTGGCAACCACCATCATCTACATCTTCTTCTGCTTCTCCAGtttctCGCAGTTCCACGGTCTGATCACTCACTACAAGATTGGCGCTCTGTGCATGAGCATAATTGAGCATGAGCTGAAGCGCTATGACCTATGGCAGGATGAACTGCAGAAGAAAAAGAAGGCTGGGGATGATGACCCAGACAATCAGAATCTGAAGAAAGAGTACGAGAAAGCCCTGAAGAAGTATCATGGACTGCTGACGAAACAGGAGCAGCTTTTAAGAGTGGCTCTGTACCTGCTTCTGAATCTGTCTGAGGATACTCGCACAGAGCTGAAGATGAGGAACAAGAACATTGTCCACCTTCTGGTGAAAACGCTAGACAGAGATAGCGAGGAGCTTCTGGTGCTGGTGGTGTCCTTCCTCAAAAAACTCAGCATCTTCTTAGAGAATAAGAATGACATGGCTGAAGTAGATACAGTGGAGAAGCTGGCCAAACTGGTGCCCTGTGAACATGAAGATCTGCTGAATGTCACTCTTCGCCTGCTCCTCAATCTGTCTTTTGATACCAGCCTCCGCAGCAAGATGGTGCAGGCGGACCTCCTGCCTAAACTCACCTCAATGCTAGGAGACGAAGCGCAGAGACAGATTGCCATGCGCATTCTCTACCACATCAGCATGGATGACCGTTTCAAGTCCATGTTTGCCTACACAGACTGCATTCCACAGGTAATGAAGATGTTGTTTGACTGTGGTGAGGAGAGGATTGATGCTGAGCTCATTTCCTTCTGCATCAACCTGGCTGCCAACAGGAGGAACACCCAGATCATGTGTGAAGGCAACGGTCTGAAGATGCTGATGAAGAGAGCACTTAAGCTAAAGGATCctctgatgatgaagatgattcgTAATATATCTCAGCATGATGGACCGTCAAAAAATCTTTTCATTGATTATGTTGGTGACCTGGCGGCTCAGATTGGACTGAAGGAAGAAGAGGAGTTTGTGATTGAGTGCTTGGGAACGCTTTCCAATCTTACCATTCCTGATCTTGACTGGGAACTTGTGCTAAAGGAGTACAACCTGGTGCCTTATCTCAAAGACCACCTCAAACCtgGCTCCGCAGAGGATGATCTCATTCTGGAGGTGGTAATCATGATTGGCACTGTATCCATGGATGACTCTTGTGCCGTAATGTTGGCCAAATCAGGCATCATTCCTGCTCTAATAGAACTGCTGAATGCCCAGCAAGAAGATGATGAGTTTGTCTGTCAGATCGTGTACGTCTTTTACCAAATGGTGTTTCACCAAGCCACACGAGATGTCATCATAAAAGAAACGCAGGCTCCAGCATATCTCATTGACCTGATGCATGACAAAAATGCAGAAATACGCAAAGTGTGTGACAATACGTTGGACATCATTGCTGAATATGACGTGGAGTGGGGCAAGAAGATCCAAAGTGAGAAGTTTCGTTGGCATAACTCACAGTGGCTTGAGATGGTGGAGAACCGGCAGATGGATGAGGCAGAGCCTTTTATGTATGGAGATGATGGAGAGCCTTTCCTCCAAAATGGTGACATCCTGGAACGGCCAGACCTCTTCTACAGTGCAGATGGAATAATCCCAGCAGATGGTGCCATCAGTCCAGAGTTCTTCACCGACTATCAGAATGGAGACCTATTAGGACAGCAGGGCTTCCCCAGCAGTTCTTTGACAGACGGTTATGGACAGACCGGCGTGAATTCAGCACGTCCCGCCACAGCTTATGGCTTTCGACCTGATGAGCAGTTTTATTATGGTCATACCGCATCACGGTAGGAGAGTCAGGAACACCTAAAACCGCTGAAAACCAATTAAATGGATCTCAAATAATACTAGTTAGCTCTCTCTATCATTTCAAGTGAAAGCGACACTACTGATTTCCTTCATCGTCAGTATTTCTTTCTCTAAAATATgtgagtatttattatttatttcacgtCTGAATGTGTTTTAAGCAGAATGTTCTCAACCAAGCTTATTTTGCAGCCCTCGTTTTGAGCATAGATGGTGTAGTTTCAGCTTTAACTTACTGTGTATTGCTTGTAAACACTGGGGAAACTAATTGCCTTTTCTGTGCAATATAGCAAAAGTAGGATATCAGTTGCATGCTCTTTCAGTGAGTTAAGTTACAGTATGAGCATTAGAAAACCAATGTGTACATTAAATCTGTTTATCTGCATGACATTGGATCAAACAAGTATTGTACAAGTCACAAATGTACAATTGTCAACATTTCTTCtacttcatgttgtttcaaatctCATCTTTGGAAAACAAATAGAGTCTAAACATATAATATCAAAGCTTTCATGAAGAATTCATTGATGCTTGAAAACATTCATAAGCAGCAGTTTAATCCAGGTCTTCTGAGGGGACACAATTGCTTCATGTGATAAACTTGTATCTTTGTAGATTTGTAACAACAGCAGGATGAGCAAATAatgacatcattttcattttgctTAAATTTTGCATATGTTTACATACACTGACTGACCATAAACGTCATTTCAATGATAGTGGGGCCCCACTGTGGTCTCCCTATGAAATTGCAACAGGTTTAAGTGCGTTTTAGATACAGCAGGTCTTAAATGCATCGCATCATAGTGACAACGGGAACAAAAACTTTCTACACTAATGTGATTGTGCAAAACAATGTTGCCTGTTATTTTGCCTTTGATACTGTACACATCTTGGCTTATTATGGTGCACTGCTATCTACTTCACACGCATTTTGTAATGTAGCCAAACTCAAGTGTTCTTTCGATGTGCATTTTAGTATTTATGATACTGAGTTTCATTAGTGCCTGGGAATTTTGTCGTAATTGCTGTTTTATATAAAATGCCTTTTTATTTAATGTGGTGCAATATCAAATACAAAGAAAAACATGTGT

Function

symbol description
kifap3a Predicted to enable kinesin binding activity. Predicted to be involved in cilium organization and microtubule-based movement. Predicted to be part of kinesin II complex. Predicted to be active in axoneme and ciliary transition zone. Orthologous to human KIFAP3 (kinesin associated protein 3).

GO:

id name namespace
GO:0044782 cilium organization biological_process
GO:0007018 microtubule-based movement biological_process
GO:0035869 ciliary transition zone cellular_component
GO:0005871 kinesin complex cellular_component
GO:0005930 axoneme cellular_component
GO:0016939 kinesin II complex cellular_component
GO:0019894 kinesin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-74 Predicted to enable kinesin binding activity. Predicted to be involved in cilium organization and microtubule-based movement. Predicted to be part of kinesin II complex. Predicted to be active in axoneme and ciliary transition zone. Orthologous to human KIFAP3 (kinesin associated protein 3).

Ensembl:

ensembl_id ENSDARG00000008639

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035906 True 3648 mRNA 0.43 20 34420623 34453623

Neighbor

gene id symbol gene type direction distance location
XLOC_018227 swt1 coding downstream 32292 34343649 ~ 34388331 (-)
XLOC_018226 hmcn1 coding downstream 128016 34157308 ~ 34292607 (-)
XLOC_018225 BX248238.1 coding downstream 267622 34151733 ~ 34153001 (-)
XLOC_018224 NA coding downstream 273027 34132570 ~ 34147596 (-)
XLOC_018223 ptgs2b coding downstream 293208 34121818 ~ 34127415 (-)
XLOC_018229 NA coding upstream 48147 34501770 ~ 34502671 (-)
XLOC_018230 NA coding upstream 61885 34515508 ~ 34536019 (-)
XLOC_018231 NA coding upstream 192324 34645947 ~ 34650661 (-)
XLOC_018232 slc25a24 coding upstream 200293 34653916 ~ 34670236 (-)
XLOC_018233 si:ch211-63o20.7 coding upstream 248787 34702410 ~ 34711528 (-)
XLOC_017928 CU539064.1 misc downstream 24366922 10053405 ~ 10053701 (-)
XLOC_018215 NA non-coding downstream 685349 33734853 ~ 33735274 (-)
XLOC_018214 NA non-coding downstream 692250 33725892 ~ 33728373 (-)
XLOC_018213 NA non-coding downstream 698418 33720994 ~ 33722205 (-)
XLOC_018244 BX510920.3 non-coding upstream 1057242 35510865 ~ 35510980 (-)
XLOC_018246 BX510920.2 non-coding upstream 1087659 35541282 ~ 35545194 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_09844992_09865415 KIFAP3, KIFAP3A coding CI01000325 null 9844947 ~ 9865415 (-)