XLOC_001823


Basic Information

Item Value
gene id XLOC_001823
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2977535 ~ 2979504 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005670
accGCATCTTTAGGACCCTAGTTTTTTGTGACAGCGTTACCTGTCGGATTGGATCATGGATGCGCTAATGGACGACACGGATGACAAGGAAAGTgccATCGTACATCCTCTGGGTGTCTTGAGGAGCTGGTCTTTGGATGATGCTGAGCAGGTCTTTCTTTCTGGTAAAGATTATCATTACAGgaGCTAAAGTCTACAGCCAGTCTGAATGCAGCAACTGAATAAACAGTGGAGTCATTTTTGtggttgaattgcattaataaaaataaaagtgtggatatttatataaatgtaca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005670 True 296 lncRNA 0.41 3 2977535 2979504

Neighbor

gene id symbol gene type direction distance location
XLOC_001821 erap1a coding upstream 56238 2899108 ~ 2921297 (+)
XLOC_001820 ccar2 coding upstream 79133 2876020 ~ 2898402 (+)
XLOC_001819 ykt6 coding upstream 126599 2841205 ~ 2850936 (+)
XLOC_001818 aebp1 coding upstream 139345 2807136 ~ 2838190 (+)
XLOC_001817 pnx coding upstream 175678 2799285 ~ 2801857 (+)
XLOC_001824 rasgrf2a coding downstream 70132 3049636 ~ 3106762 (+)
XLOC_001825 ckmt2a coding downstream 131500 3111004 ~ 3129887 (+)
XLOC_001826 hic2 coding downstream 166203 3145707 ~ 3155957 (+)
XLOC_001827 NA coding downstream 283074 3262578 ~ 3269818 (+)
XLOC_001828 zgc:56235 coding downstream 320325 3299829 ~ 3322338 (+)
XLOC_001815 FP085363.1 non-coding upstream 288854 2688565 ~ 2688681 (+)
XLOC_001807 NA non-coding upstream 473493 2499533 ~ 2504042 (+)
XLOC_001806 NA non-coding upstream 539627 2402308 ~ 2437908 (+)
XLOC_001804 NA non-coding upstream 986067 1966857 ~ 1991468 (+)
XLOC_001803 NA non-coding upstream 1056515 1904355 ~ 1921020 (+)
XLOC_001830 CU570980.1 non-coding downstream 429279 3408783 ~ 3408900 (+)
XLOC_001834 NA non-coding downstream 877563 3857067 ~ 3857885 (+)
XLOC_001839 NA non-coding downstream 1310201 4289705 ~ 4299850 (+)
XLOC_001840 NA non-coding downstream 1335459 4314963 ~ 4318863 (+)

Expression


Co-expression Network