XLOC_018234 (znf395b)


Basic Information

Item Value
gene id XLOC_018234
gene name znf395b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34737738 ~ 34754617 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035912
CCCCTCCCCTCACTGATGACTGACTGACGGTAGAGCAGCAGCGGAGCGGCGGCATCTCCACCAAAACAACCGAGCTGTTTTTTGTGCGGACTCAGTCAAAGCCGACTGTTTTAGCTGAGAGGACACAGTATGGCAGCGGTAGGATCCCGAGCAGGACTTGACACGATGGGCATTGACGGCCAGGATGGACTGGTCTACATGCAGTGTTGTGGGCAAGGAGAAGGGGTGCAGAAGAAGCTGAATGCAGGATCTGCCACCACAGACTGGTCTGTCGATGCCAACACACAGCAAACAAACCTAATGTCCTTCCCAAGGTCTTCCGGCATGGACTTACCTTACAGAAGTCCTGAATCAGTGGAGATGGATGAGATCATGGCTGCGATGGTGCTCACCAGTCTGTCCTGCAGTCCAGTGGTCCAAAGCCCCCCGCAAAAAGACCTCCTACCAGGGGACATGGAGTGTTGTGGAGGTGATCTATCTGACAGTGGCAGCAGTGGTTACTGGAGTTGGGACCATGGAAATGTAAGCCCAGCCCCGTCTCCATCGGTCAATGAGATGGACAGGAGCCCCGGCCGACCCACAGACGAGGGCCTGCACATGGAGCTGGACCAAGGTGCATGTGAGGAGCCTGAGGCCCGGAGGTGCAAGAGCTTGAGCCGGGGAGCATACAGGTGTTTGTGGCCGGGCTGTGGAAAAGTGCTGACATCGCGTGTCGGCATGAAGCGGCATATTCGCATTCTTCACCTCGGTGGAGGCTCAGAGCAGTCCCACAGAGAGGAAGACTTCTACTACACAGAGGTCTCCTCTGAAGATGAAGACACTGCACCTTCATCTCCCGCGCCTTCCTTCTCCAGTGGAGCCTGGACATCCTGCAGCTCCACACAAAGCCAGGATACAACAGTCCTGTCCAGTCCTCTCAGCCAATCCGCTCCCAGCAGTGTCTGGCAGATTCACACTGAACACCTCTATCAGGCCTGTTCACCCATTCAGGTGACGGTCTCTCCGGGCAGCCCCACATTTTGCAGCTGGACTCCGCCTGGAGACGTCCAGCAGAAACCTCAGATTCCAGCCCCTCGCAGCCGGTCGGTGAGTGTGGGAGAGCAGTGGCTCCAGAGGAACAGCACCTCCACCAGATCACACACCATCAGTGCGTCTCCATCCAGAGGACACTGCTCATTCAGGAAGGGGCGCGGCGAGGCCAAAAAGTGCCGAAAAGTGTATGGCGTGGAGCGCAGGGACCAATGGTGCACCGCCTGCCGCTGGAAGAAAGCTTGTCAGCGGTTTCCAGACTAAACAAAAAGACTTGAGGAGATGAGAAAGAATCTCTACTTTCTTTCTGTCCTCCAATTACTTCCTGCACTGTAGAGGACCCCTCTTTTCACTTTTCTACCTTTTTTTTGTGCGTGTTTTGGTTCTGTTTTTCCACAAAGTGAACGCTGGTACTAGCTGTCAAGACTGTGGAGTTGTAGGATCCCGACCCTTCGAAGGTGAATTCTGCCCTCTCGCACAAGTCTAAAGTGTAATCCTGTATCTGAACAAGGTGTTTTTAACCCTGCTCCTGCACTTATTCAACCATAGCCCAGATATTTAAGtgattgttgattttattttttgtatactgTGGACAATGTATTGCTTTAAGCATTTTCATGATGTTTTTCTATTGCcgttttttttgtgtattgtcacgtattgtctttttttttctatgtatTTACTTTGTTTCGCAAAGGTTTGACTAAGGTCGTTTGCCATAGCGCTTCCTAATCAATCTAAACTGCCAGATATAAAGCTACAGTGGTGTCGAGTGAAAGATGAAGTGAATGTTGTCGTCGGCCACACGGGTGGTCACGGTGTGTTGTCTGATGGAGAAAAAAAAGTGCAGCTATAACCTTTTGATTGAATACCAAAGTGCTATTGCAAAGAGTTTAAAGGGAGCTAGACTGAATACTGTCCCGAGTTATAGATCGGGCTTGTTTCCTTTTCTATGTTTCTTGTcatccttccaaaaaaaaaaaaaactaacaaaaaaaatgtgtttaggtCTTGTACAATACTGGATCATTCCTTTGGGAACATTTAAAAGGATTTCAAACTGTAACATCAGATAAAAAACAAAGAGATATTATGTACTGTATAATTAAAAAGACACAAGATTGAATATGCAAATTTCAAACGCTTGTCATTTGTGCATGACAAATAACAGGAATAATCGTCAAATTATTTTATTGGCCTGTTGTGTGCATTTCATGTACAAGTGGAAAGgattgaaacaataaaaaaaaatcactttccaAAAAAA
>TCONS_00035913
CTAGCTGTTTTTTGTGCGGACTCAGTCAAAGCCGACTGTTTTAGCTGAGAGGACACAGTATGGCAGCGGTAGGATCCCGAGCAGGACTTGACACGATGGGCATTGACGGCCAGGATGGACTGGTCTACATGCAGTGTTGTGGGCAAGGAGAAGGGGTGCAGAAGAAGCTGAATGCAGGATCTGCCACCACAGACTGGTCTGTCGATGCCAACACACAGCAAACAAACCTAATGTCCTTCCCAAGGTCTTCCGGCATGGACTTACCTTACAGAAGTCCTGAATCAGTGGAGATGGATGAGATCATGGCTGCGATGGTGCTCACCAGTCTGTCCTGCAGTCCAGTGGTCCAAAGCCCCCCGCAAAAAGACCTCCTACCAGGGGACATGGAGTGTTGTGGAGGTGATCTATCTGACAGTGGCAGCAGTGGTTACTGGAGTTGGGACCATGGAAATGTAAGCCCAGCCCCGTCTCCATCGGTCAATGAGATGGACAGGAGCCCCGGCCGACCCACAGACGAGGGCCTGCACATGGAGCTGGACCAAGGTGCATGTGAGGAGCCTGAGGCCCGGAGGTGCAAGAGCTTGAGCCGGGGAGCATACAGGTGTTTGTGGCCGGGCTGTGGAAAAGTGCTGACATCGCGTGTCGGCATGAAGCGGCATATTCGCATTCTTCACCTCGGTGGAGGCTCAGAGCAGTCCCACAGAGAGGAAGACTTCTACTACACAGAGGTCTCCTCTGAAGATGAAGACACTGCACCTTCATCTCCCGCGCCTTCCTTCTCCAGTGGAGCCTGGACATCCTGCAGCTCCACACAAAGCCAGGATACAACAGTCCTGTCCAGTCCTCTCAGCCAATCCGCTCCCAGCAGTGTCTGGCAGATTCACACTGAACACCTCTATCAGGCCTGTTCACCCATTCAGGTGACGGTCTCTCCGGGCAGCCCCACATTTTGCAGCTGGACTCCGCCTGGAGACGTCCAGCAGAAACCTCAGATTCCAGCCCCTCGCAGCCGGTCGGTGAGTGTGGGAGAGCAGTGGCTCCAGAGGAACAGCACCTCCACCAGATCACACACCATCAGTGCGTCTCCATCCAGAGGACACTGCTCATTCAGGAAGGGGCGCGGCGAGGCCAAAAAGTGCCGAAAAGTGTATGGCGTGGAGCGCAGGGACCAATGGTGCACCGCCTGCCGCTGGAAGAAAGCTTGTCAGCGGTTTCCAGACTAAACAAAAAGACTTGAGGAGATGAGAAAGAATCTCTACTTTCTTTCTGTCCTCCAATTACTTCCTGCACTGTAGAGGACCCCTCTTTTCACTTTTCTACCTTTTTTTTGTGCGTGTTTTGGTTCTGTTTTTCCACAAAGTGAACGCTGGTACTAGCTGTCAAGACTGTGGAGTTGTAGGATCCCGACCCTTCGAAGGTGAATTCTGCCCTCTCGCACAAGTCTAAAGTGTAATCCTGTATCTGAACAAGGTGTTTTTAACCCTGCTCCTGCACTTATTCAACCATAGCCCAGATATTTAAGtgattgttgattttattttttgtatactgTGGACAATGTATTGCTTTAAGCATTTTCATGATGTTTTTCTATTGCcgttttttttgtgtattgtcacgtattgtctttttttttctatgtatTTACTTTGTTTCGCAAAGGTTTGACTAAGGTCGTTTGCCATAGCGCTTCCTAATCAATCTAAACTGCCAGATATAAAGCTACAGTGGTGTCGAGTGAAAGATGAAGTGAATGTTGTCGTCGGCCACACGGGTGGTCACGGTGTGTTGTCTGATGGAGAAAAAAAAGTGCAGCTATAACCTTTTGATTGAATACCAAAGTGCTATTGCAAAGAGTTTAAAGGGAGCTAGACTGAATACTGTCCCGAGTTATAGATCGGGCTTGTTTCCTTTTCTATGTTTCTTGTcatccttccaaaaaaaaaaaaaactaacaaaaaaaatgtgtttaggtCTTGTACAATACTGGATCATTCCTTTGGGAACATTTAAAAGGATTTCAAACTGTAACATCAGATAAAAAACAAAGAGATATTATGTACTGTATAATTAAAAAGACACAAGATTGAATATGCAAATTTCAAACGCTTGTCATTTGTGCATGACAAATAACAGGAATAATCGTCAAATTATTTTATTGGCCTGTTGTGTGCATTTCATGTACAAGTGGAAAGgattgaaacaataaaaaaaaatcactttcc
>TCONS_00035914
gtgttgccctaaaaaaaaaagtaaagcaatATCCGACTGCGCTGCTTgactatttgcaaaaaaaatctatCGCGTGTTCGACAaagCTGTTTTTTGTGCGGACTCAGTCAAAGCCGACTGTTTTAGCTGAGAGGACACAGTATGGCAGCGGTAGGATCCCGAGCAGGACTTGACACGATGGGCATTGACGGCCAGGATGGACTGGTCTACATGCAGTGTTGTGGGCAAGGAGAAGGGGTGCAGAAGAAGCTGAATGCAGGATCTGCCACCACAGACTGGTCTGTCGATGCCAACACACAGCAAACAAACCTAATGTCCTTCCCAAGGTCTTCCGGCATGGACTTACCTTACAGAAGTCCTGAATCAGTGGAGATGGATGAGATCATGGCTGCGATGGTGCTCACCAGTCTGTCCTGCAGTCCAGTGGTCCAAAGCCCCCCGCAAAAAGACCTCCTACCAGGGGACATGGAGTGTTGTGGAGGTGATCTATCTGACAGTGGCAGCAGTGGTTACTGGAGTTGGGACCATGGAAATGTAAGCCCAGCCCCGTCTCCATCGGTCAATGAGATGGACAGGAGCCCCGGCCGACCCACAGACGAGGGCCTGCACATGGAGCTGGACCAAGGTGCATGTGAGGAGCCTGAGGCCCGGAGGTGCAAGAGCTTGAGCCGGGGAGCATACAGGTGTTTGTGGCCGGGCTGTGGAAAAGTGCTGACATCGCGTGTCGGCATGAAGCGGCATATTCGCATTCTTCACCTCGGTGGAGGCTCAGAGCAGTCCCACAGAGAGGAAGACTTCTACTACACAGAGGTCTCCTCTGAAGATGAAGACACTGCACCTTCATCTCCCGCGCCTTCCTTCTCCAGTGGAGCCTGGACATCCTGCAGCTCCACACAAAGCCAGGATACAACAGTCCTGTCCAGTCCTC

Function

symbol description
znf395b Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in retinal photoreceptor layer. Orthologous to human ZNF395 (zinc finger protein 395).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-193 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in retinal photoreceptor layer. Orthologous to human ZNF395 (zinc finger protein 395).

Ensembl:

ensembl_id ENSDARG00000024195

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035912 False 2302 mRNA 0.48 10 34737738 34754617
TCONS_00035913 False 2225 mRNA 0.48 9 34737745 34750045
TCONS_00035914 True 928 mRNA 0.54 7 34745907 34750363

Neighbor

gene id symbol gene type direction distance location
XLOC_018233 si:ch211-63o20.7 coding downstream 26210 34702410 ~ 34711528 (-)
XLOC_018232 slc25a24 coding downstream 67502 34653916 ~ 34670236 (-)
XLOC_018231 NA coding downstream 87077 34645947 ~ 34650661 (-)
XLOC_018230 NA coding downstream 201719 34515508 ~ 34536019 (-)
XLOC_018229 NA coding downstream 235067 34501770 ~ 34502671 (-)
XLOC_018235 paqr8 coding upstream 11566 34766183 ~ 34768301 (-)
XLOC_018236 stmn4 coding upstream 19029 34773646 ~ 34868814 (-)
XLOC_018237 sccpdhb coding upstream 212793 34967410 ~ 34985555 (-)
XLOC_018238 cnstb coding upstream 237003 34991620 ~ 35012093 (-)
XLOC_018239 kif26bb coding upstream 258817 35013434 ~ 35052823 (-)
XLOC_017928 CU539064.1 misc downstream 24684037 10053405 ~ 10053701 (-)
XLOC_018225 BX248238.1 non-coding downstream 584737 34151733 ~ 34153001 (-)
XLOC_018224 NA non-coding downstream 590142 34132570 ~ 34147596 (-)
XLOC_018244 BX510920.3 non-coding upstream 756248 35510865 ~ 35510980 (-)
XLOC_018246 BX510920.2 non-coding upstream 786665 35541282 ~ 35545194 (-)
XLOC_018248 NA non-coding upstream 806040 35560657 ~ 35563832 (-)
XLOC_018254 NA non-coding upstream 1473811 36228428 ~ 36228747 (-)
XLOC_018257 NA non-coding upstream 1664882 36419499 ~ 36617313 (-)

Expression


Co-expression Network