XLOC_018237 (sccpdhb)


Basic Information

Item Value
gene id XLOC_018237
gene name sccpdhb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34967410 ~ 34985555 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035920
AGATGTCGCTCTACTTCAACGTGTGTCAGTTCCTGGATTTTGCACCACAAACGGTTTATGGCCGATCTGCAGTTTTTAGAAACACAATCTGATTAAAAACTGTCTTCAGCAGTATTTCTGCACTGATACTGAAGTGACTGACCCTGGAGGTGCAGCAGAAGTGATCGTCCCGACCTCGTCACGTCACGCGGATCTCAAGACACAATGGCGGCGCTCAAAACGTCCAGCAAGAGACCGTATCACCTCATAGTTTTCGGGGCGAGCGGCTTCACCGGACAGTTCGTAGTGGAGGAGGTCGCACGGACCATTGAAGAGGGTCCAGGAGGGACTTTACAGTGGGCTGTAGCGGGACGAAGTCGACACCGACTGGAGAAAACCCTCAGTCAGGCAGCTGACGCTCTGAGTAAACCCGAACTGAAGTCTGTGGAGGTTATTGTAGCAGATGTAGCCGAGGCAGAGTCACTGGCCATCATGTGCAAACAAGCTGTCATTGTGCTCAACTGTGTGGGACCATATCGCTTCTACGGGGAGCCGGTGGTGAAGGCCTGTATTGAGAATGGGGCTCACTGCATTGACATCTGTGGAGAACCGCAGTTTTTAGAGGGGATACAACTGATGTACCACAGTAAAGCTGAGAAGAACGGTGTGTATGTCATTGGAAGCTGTGGGTTTGATTCAATACCTGCAGACATGGGCATCATTTATACACAGAATCACTTCAAAGGAACTCTCACCGCTGTGGAGAGCTTTTTAACCATCAGCACTGGACCCGAGGGAGGATGTGCCCATGATGCAACATGGCAGTCGGCCATCTTTGGCTTTGCTGACAGTGGCAACCTCAGAAGAATAAGGAAGAAGTTTGGGCATAAACCTCTGCCAGCTGTCGGCGCTCGCATTAAAAAGAGGGGAGCTGTATTCTTCAGTAAGGAGATTGAGCAGTATGCCATCCCTTTCATGGGCTCAGATCCGTCTGTGGTGCGACGGACCCAGCGCTTCATGCATGAGGAACAAAAACACAGTCCTGTTCAGTACATGGCATACGTGGGTATTGGTGGGCTTTTTTCTGTGGTGAAGACCCTCTTTGCAGGCATCATGTTCTGGTTAATGGTCAAATTTAGTCTCGGCAGAGGATTGCTGACTCAGTTTCCAGAATTTTTCTCCTTTGGTTTGTTCTCCAAGAGTGGACCATCAAAAAAGCAGATGGATGGGACCTCCTTCTGTATGAGGTTTTGGGGGGAGGGCTACAGTACAGGACAGGACCCCTCTCAGGGCAAGCCAAATTCCACAATAAGCACCGAAGTAACAGGACCAGAGCCAGGATACATCGCAACACCGATTGCCATGGTGCAGGCTGCTATTACACTGCTGAATGAACCACACTGTCTCCCTAACAAAGGTGGTGTGTTCACTCCAGGCTCAGTGTTTGCAAGAAGCACCCTAATTGAGCGTCTCAACAAACATGGCATCCGGTTTTCAATCAAGAACCCACAGTAAATAATCATGAGTACTCAGATTCACTCAGCACAGCTTATGGCCGGTGTATaatgaaccaaaataatttaGTCAATGTGTGTTGTAGGCATGCTGTTTGTGTCACACTTTAAATGCTTCAATGATGTTGTATTAAATAAACATGAGGAGAAATTGGTGGTGATTGTAAAA

Function

symbol description
sccpdhb Predicted to enable oxidoreductase activity. Predicted to be involved in glycolipid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in lipid droplet; mitochondrion; and plasma membrane. Is expressed in neural tube; primary neurons; and spinal cord. Orthologous to human SCCPDH (saccharopine dehydrogenase (putative)).

GO:

id name namespace
GO:0009247 glycolipid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005811 lipid droplet cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-211 Predicted to enable oxidoreductase activity. Predicted to be involved in glycolipid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in lipid droplet; mitochondrion; and plasma membrane. Is expressed in neural tube; primary neurons; and spinal cord. Orthologous to human SCCPDH (saccharopine dehydrogenase (putative)).

Ensembl:

ensembl_id ENSDARG00000024564

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035920 True 1662 mRNA 0.48 12 34967410 34985555

Neighbor

gene id symbol gene type direction distance location
XLOC_018236 stmn4 coding downstream 98596 34773646 ~ 34868814 (-)
XLOC_018235 paqr8 coding downstream 199109 34766183 ~ 34768301 (-)
XLOC_018234 znf395b coding downstream 212793 34737738 ~ 34754617 (-)
XLOC_018233 si:ch211-63o20.7 coding downstream 255882 34702410 ~ 34711528 (-)
XLOC_018232 slc25a24 coding downstream 297174 34653916 ~ 34670236 (-)
XLOC_018238 cnstb coding upstream 6065 34991620 ~ 35012093 (-)
XLOC_018239 kif26bb coding upstream 27879 35013434 ~ 35052823 (-)
XLOC_018240 lft1 coding upstream 88426 35073981 ~ 35076387 (-)
XLOC_018241 fzd3a coding upstream 223300 35208855 ~ 35246150 (-)
XLOC_018242 pla2g7 coding upstream 476181 35461736 ~ 35471079 (-)
XLOC_017928 CU539064.1 misc downstream 24913709 10053405 ~ 10053701 (-)
XLOC_018231 NA non-coding downstream 316749 34645947 ~ 34650661 (-)
XLOC_018230 NA non-coding downstream 431391 34515508 ~ 34536019 (-)
XLOC_018229 NA non-coding downstream 464739 34501770 ~ 34502671 (-)
XLOC_018225 BX248238.1 non-coding downstream 814409 34151733 ~ 34153001 (-)
XLOC_018224 NA non-coding downstream 819814 34132570 ~ 34147596 (-)
XLOC_018244 BX510920.3 non-coding upstream 525310 35510865 ~ 35510980 (-)
XLOC_018246 BX510920.2 non-coding upstream 555727 35541282 ~ 35545194 (-)
XLOC_018248 NA non-coding upstream 575102 35560657 ~ 35563832 (-)
XLOC_018254 NA non-coding upstream 1242873 36228428 ~ 36228747 (-)
XLOC_018257 NA non-coding upstream 1433944 36419499 ~ 36617313 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_10200118_10220665 SCCPDHB coding CI01000325 null 10199979 ~ 10221251 (-)