XLOC_018251 (tnfrsf21)


Basic Information

Item Value
gene id XLOC_018251
gene name tnfrsf21
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 35797998 ~ 35841570 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035942
GTAACCTGGACAAACAGCAGCCAGACTTCAGTCCACAGAACCATCCATCATCGCTATGGGAATTATAGCGTTCGTCTTCCAAAACCAAGCGCTTATCCCCTACTACCTGAAACCCGTACACTCCGGGGCACAGACTATAAAAAGGCGTGAGGGGACTGAATTTGTACACTGAGGGAGGATAAACCCAGCGAAGGGACAAGACCTCACAACAATGTGGGTGTCCTGTTGATGCGGAGATGCTGATGCTCCACCTATGAAGCCGAAAAGTAACAGATGTGGACCTGGGCATATTTAAAGAAGAGAGATTCCGCTGGGACAATGCCTGGGAAAATGTCTTTGATTTGGTCGCTGACGCTGCTGCTTACTGTGGTCGGTGACGTCTTAACCCACACGCTGACCCCCATCCCGACCACAGAGAAGCCCTTGTCTCCTCGGCACTACCACCACATCGACCCCGCCACTGGGAACAAGCTGGTGTGCGACAAGTGTCCGGCGGGCACCTACGTGTCATCCCACTGCACAGAGGCCAGTGTACGGGAATGCAGCCCTTGTCCGGACGGCACCTTCACTCGGGGTGAAAACGGTGTTCAGCAATGCCACCGCTGTCAGAGACGCTGCCAAGCCCCTTTTATCGAGAAAACTCCCTGCACATCCACCACTGATcgcttgtgtgtgtgtccgcCAGGCAGCTTCTCTCAGGATGGAAAGTGTCAGCGCCACTCATCATGTCTGCCTGGGTGGGGCGTCCGAAAGAGAGGAAGTGAAACAGAGGATGTACGCTGCCAGCCATGTCAGCGTGGCACCTTTTCCGCCATTACGTCAGACTCTCTGAGGTGCCAAACTCACACAGATTGCCCTGCATTGGGCTTAACTCTGCTGATCAAAGGCACAAAGAAGACTGATAATGTGTGTGGCCCAAATCCAGCCAGTTCAGTCCCTGTCCTACTTGGAGAAGCCTCTGTTTCTACAGTTTCCAGCACTGAGTCAGCATATAGAGCTAGTACAGCAGTTTTGCCAGCTGCAGATATCCAGGATGAAGCTGAGCCAGTCTTCAGTAGCACCGACATGGCCCTCGGTGCTCAAAATTTTCCCACAACCACAGCTTACCCCGAGGCTATTGATAAAGATGGAGGACTCTTAATTGCTGCAACTCAGGACCTCCCTAAATCAAAACTCAAGCTGACTTTATCAAGAGACCTTCAGCTTTCTAACCATCAGGGTGTGGAGTCTATGTCAGAGAGCAAGGCCCAAGGTTTGGGGTACCGACCCATCCGCAGGGGAGCACCAAGGCCTAGTTCTCACAAGCACTTTGACATTAATGAGCACTTGCCTTGGATGATAGTCCTGCTGCTTCTGCTGGTACTGGTCGTGATCGTGGTGTGCAGCGTCAAGCGCAGCTCACGGGTGTTAAAGAAGGGTCCCAGACAGGATCCCAGCAGCATCATGGAAAAAGCCATTCACAAGAAGCCCAGCTCTCCAGCACAGACCAAGGAGAGGTGGATCTACTACTCAAATGGTCAAGGTGTTGACATCCTGAAGTTGGTGGCAGCTCAGATTGGCAGTCAGTGGATCGACTTGTATAAATCTCTGGCCAGTGCCACAGAGCGAGAGGTGGCCGCCTTTTCCAACGGCTACACGGCGGATCATGAGAGAGCATACGCTGCTCTACAGCACTGGACCATACGAGACAGCGACGCCAATTTGGCCAAACTTATCAATGCTCTTCACCGCCAACGCCGCATTGACGTGGTGGACAAGATACGCAGTGTCATGGAAGACAATCCTCAGGTTgacctgaacaagctaatgaCGGCTGTGAATGTAAGCCATTGTCTGAGCCCCAGTCATAAGCCTTTGGAGTCTCCTGGTGTGGCGGTGGAGCAGTCGCCAATGGAGCGCAGCAGGGGATTCTTTCCAGACGAATCCGAGCCGCTGCTGCGCTGTGACTCCACTTCCAGCAAAGACTCTGCCCTCAGCCGGACGGGCTCCTTTATTACCAAAGAAAAAAAGGATACAGTGCTGCGGCAGGTGCGTCTGGACCCCTGTGACCTTCAGCCCATTTTTGACGATATGCTGCATATTCTCAACCCCGACGAGCTCCACGTCATCGAGGAGATCCCGATGGCCGAGGACAAGCTGGACCGCTTGTTCGAGATCGCCGGGGTCAAGAGTCAAGAAGCCAGCCAAACGCTGCTGGATTCAGTCTACAGCCACTTGCCTGACCTCCTTTAAACCTCCATTACATCTCACTGTCGTTAAGCTACAGAAGCAAAGTGGCGACGGACATACAAATGCGGACTCGGCCCGACTGATTGTGCCACTGATGTCACACGCACGCTGTTTTAAAAGCTCACACAAGAGTGTATCTGCTAGCTCTTGACTGGATACAGATGGTGTCAATGCTATAACCTCTCTAACATGCAGCATACTCTTGCACACGCCTCAGCATGATGTCAGACTCAAAAGCTAAACGATGTAATTCACCAGATGGTTTTGTAAGTTGAATCGAGCTCATTATGGGAGTTTGTTTCTGCCATGGAgttcaaaatattaatataaacaaaaaaagggttttgagacaaataattaaatgtcgacccaggctcattctgcaaATGTAACccgatatacatttctggagatcgtgaaatacgtcccaggagctacgtttttttgaggtttttatttttgtgaatccagcagagggcgctgtgtatgcaTTTGAGATCTCAAAGTTCTCTGTGactgccattcgcgcctgctcttctcacgtaaatccactagaggccgctctCGACTGTTCTAACTCACCAACCGACCGAGACCCCctctcacccccttccctaaacccaaccagtagtgttttcaaaagcaccaattgacccgctcACCCAGTTCCATAAACCCAagcgcagtgttttaaaaagcaatccagaaaaagaaaagccccctgcctgatttttagcacattttcagatttgaccacattctcactctgttatttacttgtttatgtaatttttggcttttgtttttgtcttacctgctacCTGGAGCCTTTCTTCACCCGACTCAAACCTCgttgtcacggtcaactcctctctgcctcTCAAGTCTGCCAAAGTACATGGCatgctaactggacaaactggtaatagctggaaagccgtccatacggatgtaaacggtcagctggtaagcgcgaaaaggaacgggctaaataattcacgatctccagataTGTACGTAGGGCTaggttttcaaaatgagcctgttgAAAAACTTTATAAGACTTCATTTCTTGCGGTTAGTTTATTAGATGGCcagcaattctgactttatctagTGCAGTTGAGGGAAGATATTTCAGATTATGAACTGAGTTTGTCAGACTTTTTAAGTGAGTCTGTGtttggcatgggccggtataagattctgatagtatgaaaactttggataaaaatatcagtttcacgGTATTAcggattactgctctaaaatactgCACGTCTGGGTAAAAAATAACAACGTTTTCCCCactgaacacaatatgttttattctcagaaacttttaaagtattttggaacagtaaacatgtcaggctaaataattcaaataaattattgacttctcctgtcttcattagtttaaaaaaaacaaatttctgTACAACttaaaaaggcatctttggagatctttttccTTGAATATAAAGCTAGCAATTATAGCATGCTGGGATGATGTGGATgctccttttctgctggagattctGTTGCCCTAAATAGCAACATAAAATAGTTGTTTAAAAGAACGGTAGAACAGAAGactttaacaattttaaaatctTGATTTTTACAAACCCCTGAACTgatcaaataaacagaatttgCAAGACAGCTGATAAACTCACCCGCATAAACTTttatgttaaagtttaaaaagaCTTCTGACTTTTTGTCTCACAATCCTAAGTTAGATCTTGCAACCTGaatggtttttgttttttttagaattgtaataaaaacatcatattttgctacatttttttttaatctggtgGGAGGAATGGGCTGCAGTACAACTGacattgttaaaatgttgtttttttgttgttgttggtttgttGCTAGTTGTAGTTTTTTTACTCTACAAATCCTATAGAGCAAGGTATTTTGTtccttttgtttgtatttttttatgttcagaaGTATTACCACTGTAGCTGGTTTAGATGATGAGTTTGTGTTTTATGTGATTTCAAGGGCATTGAAAGTCATTTCTACTGGTTATGATGCAGATCATGACTGTTGGTAATGTGCGTTCACTAGTCAActcttaaaatacttttttaaaatatgatttccATGTGCTTTTCCAGTAAAAGAGGAAAAAGACAAGTATGATTGCTAAGTAATGTCACAGAGGCTAGAGAACCACCAAAAAtctatttcacaacatttaaatgTAGCATTTCAGTGTTCATCTTTTTGCAGAGGATGATCTGTGGTACAGAGAGAATGTCTCTGTAAATCAAGTCACTCTGGTGCTAGATGTGAAACTATGGGATAGTGGTGGATTTTATCCCAGTAACAGGGTTTATGGTCATTTGACCATTTAActtaactcaaaaaaaaaaaaaaaagtaggtcaAGATGAACAGCTGGTATTAACTCTTCTGAATCCTATAGGAAGAGTGTCAAATGAACTGTTTAGAAACAAACGAGGACAGAATCATGAAGCTGAAAGCTAATATGTATTCTAACGGCTGTGTAACACATGTAACcaagacatttattattattgttaaagatCATGTAACCTGAGAAATCAACAGATTAAAGTTTTTGTCATAA

Function

symbol description
tnfrsf21 Acts upstream of or within establishment of endothelial blood-brain barrier and sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in floor plate; forerunner cell group; and pronephric duct. Orthologous to human TNFRSF21 (TNF receptor superfamily member 21).

GO:

id name namespace
GO:0051402 neuron apoptotic process biological_process
GO:0002250 adaptive immune response biological_process
GO:0042130 negative regulation of T cell proliferation biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0006959 humoral immune response biological_process
GO:0031642 negative regulation of myelination biological_process
GO:0014045 establishment of endothelial blood-brain barrier biological_process
GO:0030889 negative regulation of B cell proliferation biological_process
GO:0097252 oligodendrocyte apoptotic process biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04050 Cytokine receptors
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-030131-5971 Acts upstream of or within establishment of endothelial blood-brain barrier and sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in floor plate; forerunner cell group; and pronephric duct. Orthologous to human TNFRSF21 (TNF receptor superfamily member 21).

Ensembl:

ensembl_id ENSDARG00000001807

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035942 True 4854 mRNA 0.45 6 35797998 35841570

Neighbor

gene id symbol gene type direction distance location
XLOC_018250 adgrf8 coding downstream 47188 35719375 ~ 35750810 (-)
XLOC_018249 adgrf6 coding downstream 91619 35568552 ~ 35706379 (-)
XLOC_018248 NA coding downstream 234166 35560657 ~ 35563832 (-)
XLOC_018247 adgrf7 coding downstream 240096 35551636 ~ 35557902 (-)
XLOC_018246 BX510920.2 coding downstream 252804 35541282 ~ 35545194 (-)
XLOC_018252 ptchd4 coding upstream 224838 36066408 ~ 36107422 (-)
XLOC_018253 BX255920.1 coding upstream 379277 36220847 ~ 36227500 (-)
XLOC_018254 NA coding upstream 386858 36228428 ~ 36228747 (-)
XLOC_018255 si:dkey-1j5.4 coding upstream 538696 36380266 ~ 36393555 (-)
XLOC_018256 lbr coding upstream 552342 36393912 ~ 36416922 (-)
XLOC_017928 CU539064.1 misc downstream 25744297 10053405 ~ 10053701 (-)
XLOC_018244 BX510920.3 non-coding downstream 287018 35510865 ~ 35510980 (-)
XLOC_018231 NA non-coding downstream 1147337 34645947 ~ 34650661 (-)
XLOC_018230 NA non-coding downstream 1261979 34515508 ~ 34536019 (-)
XLOC_018257 NA non-coding upstream 577929 36419499 ~ 36617313 (-)
XLOC_018265 BX004780.1 non-coding upstream 1534344 37375914 ~ 37429416 (-)
XLOC_018268 BX088644.1 non-coding upstream 1768481 37610051 ~ 37611589 (-)
XLOC_018274 NA non-coding upstream 2286327 38127897 ~ 38140616 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_00238295_00240090 NA coding CI01000029 null 238008 ~ 240090 (-)