XLOC_018255 (si:dkey-1j5.4)


Basic Information

Item Value
gene id XLOC_018255
gene name si:dkey-1j5.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 36380266 ~ 36393555 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035945
TAGGAAAAAAGTACCCAAAACTGCCACTACTAATGACTGTGACCTATGCGGTGGGGACTCTTCTTTGAGGCCATGGAGGTGGATTTGTGATTGACAGTGAAGGAACACAACTGATGCTGAGCTCACAGTTTGCTTCAGGGACCAACATTTCAGCTCATTTGAGACCTCATCCCAGCTCAGGCCGGCTGCAGGCTTGGTAGTGAATTTCGACGTTGAAGTTCAATTAAGCATCTAGCCACAAGGGCTATGAAGCTGGTTGCAGGGTTAGCCGTGCTGTGGCTGTGGGTTGCGGAGGCCTTGGAAAACTGCCCCAGTGCTTGTAAATGTAGCCAGAAATCCAGTACGGAAAAGACTGAAGTCAACTGTCAGAAAAGGGGGCTTCAGAGCATCCCAGCCAAACTCCCTCTTGACTCGTGGATCCTGAAAATGGgcGAAAACTTTCTGCAGGACCTGCCAGGCAGCCTCCTGAGCTCCGTTCCAAAAATCGAGAGTGTAAAGTTGGAGCGAAACTCAATTAAATCAATACACCCTCAGGCATTTGCTGGAGCTCAGCGTCTAATGCTTTTGAATTTACAAGGAAACCGAATATCCAAGATCCCAGTGAAGGGCTTCAAAGATCTCCTAAACCTGCGTTTTCTCATGCTGGGCCAGAATCAGATAGCTAACCTCAAACCTAACATGTTTATTGGAATGAGGAACCTGTCAGAGTTGGATCTGCCCCTGAATGCTCTTACTGCTCTTCCACCAAATGCATTCAAACCTCTGATTGCCCTCAAAGTCCTGGACCTATCTTTGAACCGCATCCAACGAATCTCACCCAAAGCCTTTGTTGGACTCGAAGAGTTGCTTTTTCTCAACATGGACAACAACAAGCTGAAGAGTATCCAAGCTGGTACGTTTGGACCCCTGACTGGTCTTGAGATGCTGGTGCTAGACAACAATTTGCTCTCCACACTAACTGTGTCCACTCTGGAGGGTCTTTCAAACCTGCAGGAGCTTTATGTCAGAAAGAACGAAATTGAGAGCCTGCCTGCAGATGTTTTTCTCCACACACCTAAACTGACTCACGTGGGCTTAAGTGGGAATCGACTTCATGCAATTGATGGCAACATGCTAGCCAACATGCAAGGGTTGAAGGAGGTGTTTCTGCACGATAACCCATGGAAATGTGACTGCAGTATCAACTCGCTGGTACATTACCTGGCCCAGACGAAGACCAACCATTCTCCACGGCAGAGACTTCGGTGCGCTAGCCCTGAAGAGTTTCGTGACAGAGCCATCCAGGAGCTGAAATCAGAGGAACTTTCCTGCAAGGCCTAGAAAATCCTCACGTCTGATATCATGTCACGAACAACCTCCAAAAGTTCGCAGCACAGCATGATATTTCCTGCAACTGAATGGTGAGGCTTCACACAACTCCAACCACAATGACTTTGACAGGTTAATGATAGTGCGGCTGTTCTACAAATAATCATAATTTTCACCCACACCAGTTGACTATTTTCAGGCCACCTGGAGAGCAGCACATCCTACAAAACTGAGGAAGAAGTGTGCATTTGTTATTcggataaaatatatattttaaacacttttctcagatttgttatacagtatttttatgcattatttatctgGATTGGAGTTTATAAGGTGCAATGGGCTAAATGCACAgaaagtgtttttcagccacagatgaaaggttaatgtgaccattttcaatttcagaaggttaatgataatgtaatttaattaaaatatactcagttaaa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-130603-91 No description available

Ensembl:

ensembl_id ENSDARG00000073747

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035945 True 1769 mRNA 0.45 5 36380266 36393555

Neighbor

gene id symbol gene type direction distance location
XLOC_018254 NA coding downstream 151519 36228428 ~ 36228747 (-)
XLOC_018253 BX255920.1 coding downstream 152766 36220847 ~ 36227500 (-)
XLOC_018252 ptchd4 coding downstream 272844 36066408 ~ 36107422 (-)
XLOC_018251 tnfrsf21 coding downstream 538696 35797998 ~ 35841570 (-)
XLOC_018250 adgrf8 coding downstream 629456 35719375 ~ 35750810 (-)
XLOC_018256 lbr coding upstream 357 36393912 ~ 36416922 (-)
XLOC_018257 NA coding upstream 25944 36419499 ~ 36617313 (-)
XLOC_018258 slc5a6a coding upstream 253206 36646761 ~ 36671660 (-)
XLOC_018259 rpl7l1 coding upstream 281528 36675083 ~ 36679233 (-)
XLOC_018260 ptrhd1 coding upstream 404057 36797612 ~ 36800002 (-)
XLOC_017928 CU539064.1 misc downstream 26326565 10053405 ~ 10053701 (-)
XLOC_018248 NA non-coding downstream 816434 35560657 ~ 35563832 (-)
XLOC_018246 BX510920.2 non-coding downstream 835072 35541282 ~ 35545194 (-)
XLOC_018244 BX510920.3 non-coding downstream 869286 35510865 ~ 35510980 (-)
XLOC_018231 NA non-coding downstream 1729605 34645947 ~ 34650661 (-)
XLOC_018265 BX004780.1 non-coding upstream 982359 37375914 ~ 37429416 (-)
XLOC_018268 BX088644.1 non-coding upstream 1216496 37610051 ~ 37611589 (-)
XLOC_018274 NA non-coding upstream 1734342 38127897 ~ 38140616 (-)
XLOC_018275 NA non-coding upstream 1742716 38136271 ~ 38136792 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_00520844_00524249 NA coding CI01000029 null 519834 ~ 524342 (-)