XLOC_018256 (lbr)


Basic Information

Item Value
gene id XLOC_018256
gene name lbr
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 36393912 ~ 36416922 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035946
taaacaaagATGCCGCCTGCAAGGTTTCAGATTGGAGATACTGTAATGGGCCGCTGGCCCGGCAGTAACCTTTATTATGAGGTCAAGGTGATGAGTTTTGATAACAAGACTCGCCTCTACACCGTCATCTACAAAGATGGTACTGAGCTGGAGCTGAAGGAGTCAGACATCACGAGTGTGGTCATTTTTCAAACTGCTGGACGGTCGAGGTCAAGATCTCGATCACCGGGACGCTCGCCAGGACGTTCATCGGCACGTTCCCCGGGACGCCCACGTCGCAGTCGCTCCCGTTCACCAGCTAGGACGCCGCGCAGAGCTTCATCTCGCAGCACAGAAGTGCGCAAGGAAAAACTCAAAGAAGTGCTGGAGGTTCGACTCACTCCTGTGGCGATGAAACACGAGAACAACAGCAGCAACAGCAAATCTGAGAAGAAAGAGGAAAATAATACAGCTAAAGCAGCTCCTGTAGTCACAGAGGAGAAGACAGAGACTGAATCAGAGAACCAGACAGGTGGACGATATAATCTACGGCGCAGGAAGGACCAGGGTGATGGCAAGGCTGTAGAGCTGGAGAAAGCCGTAGAGTCTGAGCCGTTATTGCAAACTAAAGCACCAGCAGCCGTCAAGACCGCCGATCTGGAGTTTGGAGGAAGAGTCGGTGTGCTTTTCCTGATGTTTCTGCTGCCAGTGGCTGTGTTGGTATTGCTCATTCTCTGTGGGCAGAAGGATGCCAGTCTCCAGAGCTTTCCTCTTGAGCTTCCCGCTCTTCAGTCTGTCTGGGATTGCCAGGTCTTTGGCATCGTCCTGCTCTGGCTTCTCTTCCAGGCCTTCCTCTCCTTGCTCCCTGTCGGAAAGCTTGTTGAAGGAATGCCACTTAAGAATGGGAAAACTTTGAAATACAGGATTAATGGTTTCTATGCGTTACTCCTCACGGCTGTGGCAGCAGGTGTCGCTGTGTACCAGGAGGTGGATCTCAGCTACATCCATGCACACTTCTTGCAGTTCTACACCTCTGCCCTGCTCATCGCAACTCTCCTCAGCATCTACCTGTTCATCCGCTCCCGCTGGGCATCTAAAGATGAGCTAGCTCCCGGAGGAAACTCTGGCTACATCATTTATGACTTCTTCATGGGCAGAGAGTTAAATCCCCGTATCAAAAGCTTCGATATTAAGTTCTTCTGTGAAATGCGCCCTGGACTGATGGGTTGGGTGTTGATCAACTTTGCGATGTTGCTTGCTGAAATGAAGCAGCAGAATCTGGAGAATCCGTCTCCAGCGATGCTCCTGGTCAACATCTTCCAGCTCCTGTGGGTCATCGATGGCTTGTGGCATGAGGAGAAGCTGCTGACTATGATGGACATAATGTATGATGGCTTTGGATTTATGTTGACATTTGGAGATTTGGCTTTTGTTCCCTTTACATTCACATGTCAAGCATACTATCTAGTCAACCATCCCAATGAGCTCTCAGTGTTCTGGATCATTACTCTCATTGCTATGAACGGAGTGGGATACTATATTTTCAGGAAAGCCAACTCTCAGAAGTTTGCCTTCAGGAAAAACCCTTCTGACCCGGCAGTGTCTCATCTGAAAACTATTCCTACTGCAACTGGAAAAAGTCTCATTGTGTCTGGTCTCTGGGGTTTCGTCCGTCATCCCAATTACCTGGGGGACATCATCATGGCTTTGGCCTGGTCTCTACCATGCGGGTTCAACAATCTGGTCCCTTATTTTTACCTGATCTATTTGGTCACTCTGCTGGTGCACCGTAACGCACGGGACGAGCGTCAGTGCAGGAAAAAGTACGGCTCTGCATGGGAAGAGTACTGCAAAGCTGTCCCGTACCGCATTTTCCCAAGAGTATACTGAGACTTAGTCTGTTATGGACACTCGGGGCCTAAACACCAGGATGACACCGAACATCAGACAGGGAATGAGTCATTAGCAGCTTAGCCTcctttttaaagtcttttaaaaacaaaaacaattacaattgAGCACCAAAATCAAACCAATTTTTCAGTCACAAAGCGTTTACGGATTGTGGACACTGCCCCAGTTTGCAGAGTTTGATCTCTTAGATGTATATTAttgtacatatgtttttttttttttttaactcttaaaTTTGTGTTGCATAATCCTCAACTTGCCATCTCATCTGatgtacacacatatacacatttaaCGTATTTGCTTGGCTATTTaccattgacttttttttatgaCACATTGTGTAATGCTTTTGTATATTGTGTATGATGGGATTTTTTTATATGTGTATAGTAAGGAAAAGATGTAATGTTCGTTCTCAGGACCAgcaatttgtgaaaaaaaaatacaaaaaaaaaaccaactAAAAATAAGCAAAACTATATTTTCATAAGTTCTGTACATAGTTAATACTTTTTTTGGTTTGATTTGCATTTTAGGCATTCATGCACTATGCTAAACCTTGTTTTTCATCCAAAGTTCACACAATTTGGCTTTGCTACCTCAGTTTTATTTCTGTAGAAAACCATGTAtgaattagttttttctttttgagtTTTGGAATCTGGTTTTCAGGCACTATATGAAGTGTATCTTTCTCAATCATAATTGTGTGCTGtgaacaaaaatgttgaactatgaacTTTAATCTTGTGCAAGGTAGCATGACTTTTCATTGAGGGttttaatgaaaaatgaaaaaaatgacaatgCTTAACTGTGAATGTGTATTGTAAAGCTTTTCTTAACCTATTACATCAGCCTCTCTTCTATGCAAGTATATCACTTGTGGGCATAACAGTTGTCCTAATAAGAGTTAAAAATAAGTGTTTCTAGTTAAGATTAGCTGTTACTTTATAGCAGTGAAAGAAAGCGTTGTACAATGTTATTTATCTGGTGTTCAATTGTGTTATTTGACAAGCAGTTTCTGTGTAAATGCCgtttttaatattcattattgattAAACCACTTTAGACAAACAGTATGCCGCATGTCTTGTCCCAAAACGAAATGTACAGATTGctgaatttattcatttacttatctaGAAATCAATAACATATGTAAAGTTGCATTGAGTTTGACTGTTGTGAATTCCTACTGTAGTTTGTCTTTTTCCatcatttcatttctttttttcccccgtcATTAGTTCCACTCACTAATCAAATCACTTGTAACTGTGTGATAAAAACAGACTTTATTTAACCTTATTgttacaaatacatttaatatttcatttgctTTTTGACTTGATATTTCGTATTTGTTTAATGAATGTAGttttatattacaaaaatattacattaagtaaaatattgtccaaaaagtgacatttttgttttataaaataatgttaCTTGATTTTGTTACAGATTGGAATGGAAATATGACAGTATTAGAGTGAAAACATTAGTCTTTTAGTCTCAGAAAAGAAAGTGTTTGAGTCTGTTTTATACTATTGTTTAGTTCAgcggtgtccaaactcaatcctggagggccgcggTCCTACTgcgtttagctccaatttgcttgccaagaagtttctagtatatcttaGTAAAAGACTGattggctggttcaggtgtgtatggttagggttggaactaaactcttcaGTTCACCAGCCCTTGCTAAGTTTAGCTCTGCAGGTTATATTATCAGCAAACCTCACAGACTGAGCAGGAAATATGCATGCTTTGCAGACAGACTAGACTCCAATAAAATCAATAAACCTGGAAGAATGGCATACTTGGACATTCAAATTTATCGCTCCATTGCTAAATATACATAAAAGTACACAgaatataattaaaacataaaaatgtttcGAGTTTTCTCCCTAAAGGTTAGGATTGCAGATAGAAGAGAATGTACGTGCTGGTGTTAATGCCAGAAAAgctttcacaaacacacacacacacacacacacacacacacatatatatatatatatatatatatatatgaattgatTCATTTGAGTCATATGTTCGTAAATCAGACttcatattttaattatacatgtgtatatgtgtgcttCACGCGAGAAGCTTTACCTAAAAACTCGGTGAAATGGGTAATTAACAGAACCTAATTTTAAATTGAGATCTTAGTATAATTATGCACTTATTTGCAATTTGCGACCCCCAGTTTGACACGGATACAGGCGAATATTTCTGCTGTTTCCAACTGAAATCAGAAGTTGGATGGCAAATATAAGTTTAGTTAAGTCACGTGACGTGATTCATGATTAGCTAGTCAGTTGCAGGTGCAGCACCATTTTCTGACATCCATGACAGTCATCTGTTGTCAAGTGAAGTGACACGAGCTAAACGTCTTATAGCTTTTGTGAGAGCCAAAGAAGAAAGTTATGGCTAAAGGGTGAGTAAAGTTCCAGATTTGTCACACTCATTCTTACTAATTATTTACACTTGACAACCTGTTTACTTTTTTGATGTATTGGAGTGGTAATTTAGTAGTCTATCTTTTAATTATGGTAGGGTAATTTACGTTGTGTATCTATCTTCAACACTTTTCGGATGTTATTCACAATTAAATGTAGTCCTGACAGAAACACTGAACAAAACAAGTAGTGTATACTTTCACTGTAACATTACTGTTTCTACAATGTTTCATAAATTAAATTGCAGTATAAAGTAGTGCCGTCAAACGAATAATCGCGATTAATTACATctgaaataaaaattcatttttactaaatatgtgtgt
>TCONS_00035947
AGGAACGAGTTCAGAGCGGGGGCCAGCGTTTTAAAAcaatattctttattttatgaacTTCCACGGATAAGCTTTAGTGATTTTTAGGAAAATAAGGTCGACTGAAGtaaacaaagATGCCGCCTGCAAGGTTTCAGATTGGAGATACTGTAATGGGCCGCTGGCCCGGCAGTAACCTTTATTATGAGGTCAAGGTGATGAGTTTTGATAACAAGACTCGCCTCTACACCGTCATCTACAAAGATGGTACTGAGCTGGAGCTGAAGGAGTCAGACATCACGAGTGTGGTCATTTTTCAAACTGCTGGACGGTCGAGGTCAAGATCTCGATCACCGGGACGCTCGCCAGGACGTTCATCGGCACGTTCCCCGGGACGCCCACGTCGCAGTCGCTCCCGTTCACCAGCTAGGACGCCGCGCAGAGCTTCATCTCGCAGCACAGAAGTGCGCAAGGAAAAACTCAAAGAAGTGCTGGAGGTTCGACTCACTCCTGTGGCGATGAAACACGAGAACAACAGCAGCAACAGCAAATCTGAGAAGAAAGAGGAAAATAATACAGCTAAAGCAGCTCCTGTAGTCACAGAGGAGAAGACAGAGACTGAATCAGAGAACCAGACAGGTGGACGATATAATCTACGGCGCAGGAAGGACCAGGGTGATGGCAAGGCTGTAGAGCTGGAGAAAGCCGTAGAGTCTGAGCCGTTATTGCAAACTAAAGCACCAGCAGCCGTCAAGACCGCCGATCTGGAGTTTGGAGGAAGAGTCGGTGTGCTTTTCCTGATGTTTCTGCTGCCAGTGGCTGTGTTGGTATTGCTCATTCTCTGTGGGCAGAAGGATGCCAGTCTCCAGAGCTTTCCTCTTGAGCTTCCCGCTCTTCAGTCTGTCTGGGATTGCCAGGTCTTTGGCATCGTCCTGCTCTGGCTTCTCTTCCAGGCCTTCCTCTCCTTGCTCCCTGTCGGAAAGCTTGTTGAAGGAATGCCACTTAAGAATGGGAAAACTTTGAAATACAGGATTAATGGTTTCTATGCGTTACTCCTCACGGCTGTGGCAGCAGGTGTCGCTGTGTACCAGGAGGTGGATCTCAGCTACATCCATGCACACTTCTTGCAGTTCTACACCTCTGCCCTGCTCATCGCAACTCTCCTCAGCATCTACCTGTTCATCCGCTCCCGCTGGGCATCTAAAGATGAGCTAGCTCCCGGAGGAAACTCTGGCTACATCATTTATGACTTCTTCATGGGCAGAGAGTTAAATCCCCGTATCAAAAGCTTCGATATTAAGTTCTTCTGTGAAATGCGCCCTGGACTGATGGGTTGGGTGTTGATCAACTTTGCGATGTTGCTTGCTGAAATGAAGCAGCAGAATCTGGAGAATCCGTCTCCAGCGATGCTCCTGGTCAACATCTTCCAGCTCCTGTGGGTCATCGATGGCTTGTGGCATGAGGAGAAGCTGCTGACTATGATGGACATAATGTATGATGGCTTTGGATTTATGTTGACATTTGGAGATTTGGCTTTTGTTCCCTTTACATTCACATGTCAAGCATACTATCTAGTCAACCATCCCAATGAGCTCTCAGTGTTCTGGATCATTACTCTCATTGCTATGAACGGAGTGGGATACTATATTTTCAGGAAAGCCAACTCTCAGAAGTTTGCCTTCAGGAAAAACCCTTCTGACCCGGCAGTGTCTCATCTGAAAACTATTCCTACTGCAACTGGAAAAAGTCTCATTGTGTCTGGTCTCTGGGGTTTCGTCCGTCATCCCAATTACCTGGGGGACATCATCATGGCTTTGGCCTGGTCTCTACCATGCGGGTTCAACAATCTGGTCCCTTATTTTTACCTGATCTATTTGGTCACTCTGCTGGTGCACCGTAACGCACGGGACGAGCGTCAGTGCAGGAAAAAGTACGGCTCTGCATGGGAAGAGTACTGCAAAGCTGTCCCGTACCGCATTTTCCCAAGAGTATACTGAGACTTAGTCTGTTATGGACACTCGGGGCCTAAACACCAGGATGACACCGAACATCAGACAGGGAATGAGTCATTAGCAGCTTAGCCTcctttttaaagtcttttaaaaacaaaaacaattacaattgAGCACCAAAATCAAACCAATTTTTCAGTCACAAAGCGTTTACGGATTGTGGACACTGCCCCAGTTTGCAGAGTTTGATCTCTTAGATGTATATTAttgtacatatgtttttttttttttttaactcttaaaTTTGTGTTGCATAATCCTCAACTTGCCATCTCATCTGatgtacacacatatacacatttaaCGTATTTGCTTGGCTATTTaccattgacttttttttatgaCACATTGTGTAATGCTTTTGTATATTGTGTATGATGGGATTTTTTTATATGTGTATAGTAAGGAAAAGATGTAATGTTCGTTCTCAGGACCAgcaatttgtgaaaaaaaaatacaaaaaaaaaaccaactAAAAATAAGCAAAACTATATTTTCATAAGTTCTGTACATAGTTAATACTTTTTTTGGTTTGATTTGCATTTTAGGCATTCATGCACTATGCTAAACCTTGTTTTTCATCCAAAGTTCACACAATTTGGCTTTGCTACCTCAGTTTTATTTCTGTAGAAAACCATGTAtgaattagttttttctttttgagtTTTGGAATCTGGTTTTCAGGCACTATATGAAGTGTATCTTTCTCAATCATAATTGTGTGCTGtgaacaaaaatgttgaactatgaacTTTAATCTTGTGCAAGGTAGCATGACTTTTCATTGAGGGttttaatgaaaaatgaaaaaaatgacaatgCTTAACTGTGAATGTGTATTGTAAAGCTTTTCTTAACCTATTACATCAGCCTCTCTTCTATGCAAGTATATCACTTGTGGGCATAACAGTTGTCCTAATAAGAGTTAAAAATAAGTGTTTCTAGTTAAGATTAGCTGTTACTTTATAGCAGTGAAAGAAAGCGTTGTACAATGTTATTTATCTGGTGTTCAATTGTGTTATTTGACAAGCAGTTTCTGTGTAAATGCCgtttttaatattcattattgattAAACCACTTTAGACAAACA

Function

symbol description
lbr Predicted to enable oxidoreductase activity, acting on the CH-CH group of donors. Acts upstream of or within cell migration involved in gastrulation. Located in nuclear inner membrane. Is expressed in several structures, including hypochord; nervous system; neural plate; optic vesicle; and tail bud. Human ortholog(s) of this gene implicated in Greenberg dysplasia; Pelger-Huet anomaly; and primary biliary cholangitis. Orthologous to human LBR (lamin B receptor).

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0016126 sterol biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005637 nuclear inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
ko00100 Steroid biosynthesis
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030804-11 Predicted to enable oxidoreductase activity, acting on the CH-CH group of donors. Acts upstream of or within cell migration involved in gastrulation. Located in nuclear inner membrane. Is expressed in several structures, including hypochord; nervous system; neural plate; optic vesicle; and tail bud. Human ortholog(s) of this gene implicated in Greenberg dysplasia; Pelger-Huet anomaly; and primary biliary cholangitis. Orthologous to human LBR (lamin B receptor).

Ensembl:

ensembl_id ENSDARG00000014013

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035946 False 4726 mRNA 0.39 13 36393912 36408836
TCONS_00035947 True 3082 mRNA 0.43 14 36395663 36416922

Neighbor

gene id symbol gene type direction distance location
XLOC_018255 si:dkey-1j5.4 coding downstream 357 36380266 ~ 36393555 (-)
XLOC_018254 NA coding downstream 165165 36228428 ~ 36228747 (-)
XLOC_018253 BX255920.1 coding downstream 166412 36220847 ~ 36227500 (-)
XLOC_018252 ptchd4 coding downstream 286490 36066408 ~ 36107422 (-)
XLOC_018251 tnfrsf21 coding downstream 552342 35797998 ~ 35841570 (-)
XLOC_018257 NA coding upstream 2577 36419499 ~ 36617313 (-)
XLOC_018258 slc5a6a coding upstream 229839 36646761 ~ 36671660 (-)
XLOC_018259 rpl7l1 coding upstream 258161 36675083 ~ 36679233 (-)
XLOC_018260 ptrhd1 coding upstream 380690 36797612 ~ 36800002 (-)
XLOC_018261 slc25a27 coding upstream 384882 36801804 ~ 36809059 (-)
XLOC_017928 CU539064.1 misc downstream 26340211 10053405 ~ 10053701 (-)
XLOC_018248 NA non-coding downstream 830080 35560657 ~ 35563832 (-)
XLOC_018246 BX510920.2 non-coding downstream 848718 35541282 ~ 35545194 (-)
XLOC_018244 BX510920.3 non-coding downstream 882932 35510865 ~ 35510980 (-)
XLOC_018231 NA non-coding downstream 1743251 34645947 ~ 34650661 (-)
XLOC_018265 BX004780.1 non-coding upstream 958992 37375914 ~ 37429416 (-)
XLOC_018268 BX088644.1 non-coding upstream 1193129 37610051 ~ 37611589 (-)
XLOC_018274 NA non-coding upstream 1710975 38127897 ~ 38140616 (-)
XLOC_018275 NA non-coding upstream 1719349 38136271 ~ 38136792 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_00532933_00536043 NA coding CI01000029 null 532645 ~ 536758 (-)