XLOC_018258 (slc5a6a)


Basic Information

Item Value
gene id XLOC_018258
gene name slc5a6a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 36646761 ~ 36671660 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035953
ATTCATCGCCTGAACTCTGACCAAGCACGTCACCTGCAGTCCTCGGTAATGATGACCAAATGGACCACTATCCACTGACCCTTCACTGACCATCCAGGAGCCTCATTGCTCCGTGTGTTCCTCAGCATGGGGGACACTGTCCAAATGCACTTCAGCACGGTAGATTATGTGATTTTCGTCGTGCTATTAGTGGCATCCGCAGGAATCGGCCTTTACTACGCCTTCTCAGGGGGTCGGCAGAGGACCACACAGGAGTTCCTGCTGGCCGACCGTAGCATGCGCTGCCTTCCCGTATCACTTTCACTGTTAGCCACCTTTCAGTCAGCTGTGGCCATCCTGGGTGCCCCGTCTGAGATCTACACCTATGGCACACAGTACTGGTTCCTAGGCTGCTCCTACTTCCTGGGCCTGCTCATTCCTGCACACATTTTCATCCCAGTTTTCTATCGCCTCCGCCTCAGCAGTGCATATGAGTATCTGGAGCTTCGTTTTAGCAAAAGTGTTCGGATATGTGGCACTGTGACCTTCATTTTTCAAATGGTAATCTATATGGGAGTTGTCCTGTATGCTCCTGCACTTGCACTTAATGCAGTAACGGGTTTTGACCTTTGGGGGGCAGTGCTGGCAATGGGGCTAGTTTGTACACTTTATACAGCATTGGGTGGTCTGAAAGCAGTGATCTGGACAGACGTGTTTCAGACAATCGTTATGTTTGCAGGGCAACTGGCAGTGATCGTGGTGGGCACACACCAGGCAGGCGGCATCGCTGAAGTGTGGAGGAAAGCACAAAATGGCAGCCGTATCGCAGGCCTTGATCTGAACCCTGACCCTTTAGAGAGGCACACTTTCTGGACCCTAGGAGTTGGAGGTGTTTTTCTCATGCTGGCCCTGTATGGAGTGAACCAGGCTCAGGTCCAGAGATACCTCAGCTCCCGCACGGAGAAAGAGGCCATCATGTCCTGCTATGCGGTGTTTCCTTGTCAGCAGGTTGTGCTCACATTGGGCTGTTTGATGGGTTTGGTTATGTACGCTCGATATGGGGAGGAAAGCCCTCTGGATCAGGGCTACGTTACAACTAATGATCAGATGGTGTTGTATTTTGTAATGGATGTGTTGAGGGATCTTCCTGGTTTGCCAGGACTATTTGTCGCTTGCCTTTTTAGTGGAGCTCTAAGCACAATCTCATCTGCCTTTAACTCTCTGGCAACAGTAACCATGGAGGACCTGATCAAACCTCATGTCCCAGCCATGACAGAGGCCCGCGCCACTCTGTTATCCAAAATGTTGGCTCTTGCCTATGGGCTTGTGTGTTTGGCTATGGCGTACATCGCGTCCTTAATGGGGTCTGTGCTGCAGGCAGCACTCAGTATTTTTGGGATGGTGGGAGGACCTCTACTTGGTCTTTTTTGTCTCGGGATGTTTTTCCCTTGGGCCAATTCCACTggtGCACTGGTTGGACTGGCATCAGGACTGGTCATGGCTTTCTGGATCGGCATCGGCAGCTTTGTTTCACGAATGTCTCCCTCTGCACTACCTGTGATCAATGCCACCATCATACCCGATGTGGGAAACATGACGACAGCTGTCATGACGACACTCACCACAACTAAACCCAGGCCTTCTGGAGTTCAGGCTCTGTACTCTTTGTCATATATGTGGTACAGTGCTCATAATTCAGCTACAGTTGTGGTGGTGGGACTGGTGGTCAGCTTTCTTACAGGACCCTGGAAGGAGAAAGATTTAAACCCAGGTACGGTTTATCCAGTGCTTGGAAATTTGCTGTTTTTTCTGCCTCAGCGCTACAGGGAGAAACTCTGCTGTGTAACTCCTCTGGAAGACAAGtCCAAAGATCTGGACCGTCAACCTTACCAGATGGCCCAGAAAGAGAGCAACGGTGTAGCCTGCACTAAAGAGGAAGACAAACTCAGGGAAGAGGAAGGAGAACGTGTAACTGCCCAACCGACTTGTAACCTCGCCCATACTCTACAAGAAACAGCCTTGTGACAACAACAGTTCAAGGGTAACTCAATCTCCTGCAGGCTTTAGGAGAAAAATGTTGGTTCCGATGCCAAAATGGTTTAAATGTACGACCTCACCGTTCCCTCCTATCGAATTGGTCCATAAGCTGTGGTTTGTATCTGCAATATTGGTACGATGTGCCCTGAACTGCCAGTGATGGAGGTTTGGGGGGTTGTCTGTTTATATGTGCTGCTTCATGATGCCAGTGGTCTGTTTTATCGAATTTGAGATCCCGTTAAATGAACTCGCTCAAGAGATcaactaaataattttgtttactcGTCCTAAAATTGAATCTTTA

Function

symbol description
slc5a6a Predicted to enable sodium-dependent multivitamin transmembrane transporter activity. Predicted to be involved in biotin transport; pantothenate transmembrane transport; and sodium ion transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC5A6 (solute carrier family 5 member 6).

GO:

id name namespace
GO:0015878 biotin transport biological_process
GO:0015887 pantothenate transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0015293 symporter activity molecular_function
GO:0008523 sodium-dependent multivitamin transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-177 Predicted to enable sodium-dependent multivitamin transmembrane transporter activity. Predicted to be involved in biotin transport; pantothenate transmembrane transport; and sodium ion transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC5A6 (solute carrier family 5 member 6).

Ensembl:

ensembl_id ENSDARG00000042859

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035953 True 2320 mRNA 0.49 16 36646761 36671660

Neighbor

gene id symbol gene type direction distance location
XLOC_018257 NA coding downstream 29448 36419499 ~ 36617313 (-)
XLOC_018256 lbr coding downstream 229839 36393912 ~ 36416922 (-)
XLOC_018255 si:dkey-1j5.4 coding downstream 253206 36380266 ~ 36393555 (-)
XLOC_018254 NA coding downstream 418014 36228428 ~ 36228747 (-)
XLOC_018253 BX255920.1 coding downstream 419261 36220847 ~ 36227500 (-)
XLOC_018259 rpl7l1 coding upstream 3423 36675083 ~ 36679233 (-)
XLOC_018260 ptrhd1 coding upstream 125952 36797612 ~ 36800002 (-)
XLOC_018261 slc25a27 coding upstream 130144 36801804 ~ 36809059 (-)
XLOC_018262 txlnba coding upstream 174127 36845787 ~ 36887516 (-)
XLOC_018263 cited2 coding upstream 243483 36915143 ~ 36917670 (-)
XLOC_017928 CU539064.1 misc downstream 26593060 10053405 ~ 10053701 (-)
XLOC_018248 NA non-coding downstream 1082929 35560657 ~ 35563832 (-)
XLOC_018246 BX510920.2 non-coding downstream 1101567 35541282 ~ 35545194 (-)
XLOC_018244 BX510920.3 non-coding downstream 1135781 35510865 ~ 35510980 (-)
XLOC_018265 BX004780.1 non-coding upstream 704254 37375914 ~ 37429416 (-)
XLOC_018268 BX088644.1 non-coding upstream 938391 37610051 ~ 37611589 (-)
XLOC_018274 NA non-coding upstream 1456237 38127897 ~ 38140616 (-)
XLOC_018275 NA non-coding upstream 1464611 38136271 ~ 38136792 (-)
XLOC_018276 NA non-coding upstream 1571632 38243292 ~ 38244961 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_00653876_00662303 SLC5A6A, SLC5A6 coding CI01000029 null 653614 ~ 662874 (-)
bowfin (Amia calva) AMCG00004186 slc5a6,LOC107601523,LOC107690043,LOC103362495 coding CM030121.1 CM030121.1 36748856 ~ 36765206 (+)