XLOC_018259 (rpl7l1)


Basic Information

Item Value
gene id XLOC_018259
gene name rpl7l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 36675083 ~ 36679233 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035954
ACGTCATCTTTGTGCGACGGGAATTTGTCACAGCAAACGCGATGGCAGAACCAGGAACTGAGAAAGTGATCAAGCTTGTTCCTGAGAATCTTCTCAAGAAACGCAAGGCATACCAGGCTATCAAAGCCAATCAAGCTAAACTTGCTTTACAGCAGAAGAAAAGGGTCCAAAAAGGAATCCCCTTCAAGTTTAAGCGCTTGGAGGAGTTTTTGCAAAACAGCAGGAGAAAGCATCGAGATGAGACCAGGCTCGCCAGACTCAAAAAGAGACCTCCACCACCCATGCCACCAGCCAAGAACAGCCTGGCATTCGCTGTCCGCATTAGAGAGATCAAAGGTGTGAGCCCTAAAGTGATGAACGTTATTCAGATGCTGAGACTCAGGAAGATCTTCAGTGGCACCTTTGTCAAAGTCAGCAAGCATTCAATAAACATGCTTAAGACTGTGGAACCTTATGTTGCGTGGGGGTATCCCAACTTGAAATCAGTGCGCGAGCTCATCTTGAAAAGAGGCCAGGGAAAGGTTGATAAAAGAAAAATTCCTCTCACCGACAACACACTCATAGAGCAGCATCTAGGTAAATATGGCATCATCTGTTTGGAGGACCTCATCCATGAGATCTATTCTGCTGGTAAGAACTTCAGGGTGGTGAACAACTTCCTGTGGCCATTCCGTTTGTCAGTTCCACGACATGCTGCTAGGGACAAAGTTGGACTAATGAAAGATGTTGGAAATCCTGGACCTAGAGCTGAGGACATAAACACAGTCATTAGGAAACTCAACTGAGCAAATAGACTCTCGTGGACTGTTGTTTTGTTGCCCCCATTCAGAAtgaacatacaaaagagagagagcagAGCCTGTTTCTCATTGTGCCATCACAATTGAATGTCCAATTCAAGTGGACGTTTCCTCAGAAGAATACAGGAGTTTACTGTTGACCTTTTGAAAAATTGAAACACTGCTGTGCAAATCTGTCAGTTTCTTTGCCTTGTAAAGTTTGTggattactttttattaaacaatgcaaaaa
>TCONS_00035955
GTGCGACGGGAATTTGTCACAGCAAACGCGATGGCAGAACCAGGAACTGAGAAAGTGATCAAGCTTGTTCCTGAGAATCTTCTCAAGAAACGCAAGGCATACCAGGCTATCAAAGCCAATCAAGCTAAACTTGCTTTACAGCAGAAGAAAAGGGTCCAAAAAGGAATCCCCTTCAAGTTTAAGCGCTTGGAGGAGTTTTTGCAAAACAGCAGGAGAAAGCATCGAGATGAGACCAGGCTCGCCAGACTCAAAAAGAGACCTCCACCACCCATGCCACCAGCCAAGAACAGCCTGGCATTCGCTGTCCGCATTAGAGAGATCAAAGGTGTGAGCCCTAAAGTGATGAACGTTATTCAGATGCTGAGACTCAGGAAGATCTTCAGTGGCACCTTTGTCAAAGTCAGCAAGCATTCAATAAACATGCTTAAGACTGTGGAACCTTATGTTGCGTGGGGGTATCCCAACTTGAAATCAGTGCGCGAGCTCATCTTGAAAAGAGGCCAGGGAAAGGTTGATAAAAGAAAAATTCCTCTCACCGACAACACACTCATAGAGCAGCATCTAGGTATGTTGTTGATGTGGTAGACACATTTTATTCAGAGCTGGGGATTTTGGGCTACTTATAATATTCCTTtctgtaaatttatttataaagaactttatatattttacagtcttttataaataaaattgggAAAATGAAATCTCTTACTCCCTTTACATGTTAAGCAGGTATTTGCATGTTACTTTAAAAGACAAAGTAGCAAAATAAAGCCTTTATACATTCTGGAATGAAACGATTGTCTTACAGTGTTGACA
>TCONS_00035956
ACAGCAAACGCGATGGCAGAACCAGGAACTGAGAAAGTGATCAAGCTTGTTCCTGAGAATCTTCTCAAGAAACGCAAGGCATACCAGGCTATCAAAGCCAATCAAGCTAAACTTGCTTTACAGCAGAAGAAAAGGGTAAGAATTCTTCTATGTGTTAATAGTCCAATAATTACttcaaaaacaaactaataaactaaatatttcaCCAGGTCCAAAAAGGAATCCCCTTCAAGTTTAAGCGCTTGGAGGAGTTTTTGCAAAACAGCAGGAGAAAGCATCGAGATGAGACCAGGCTCGCCAGACTCAAAAAGAGACCTCCACCACCCATGCCACCAGCCAAGAACAGCCTGGCATTCGCTGTCCGCATTAGAGAGATCAAAGGTGTGAGCCCTAAAGTGATGAACGTTATTCAGATGCTGAGACTCAGGAAGATCTTCAGTGGCACCTTTGTCAAAGTCAGCAAGCATTCAATAAACATGCTTAAGACTGTGGAACCT
>TCONS_00035957
GAACTGAGAAAGTGATCAAGCTTGTTCCTGAGAATCTTCTCAAGAAACGCAAGGCATACCAGGCTATCAAAGCCAATCAAGCTAAACTTGCTTTACAGCAGAAGAAAAGGGTCCAAAAAGGAATCCCCTTCAAGTTTAAGCGCTTGGAGGAGTTTTTGCAAAACAGCAGGAGAAAGCATCGAGATGAGACCAGGCTCGCCAGACTCAAAAAGAGACCTCCACCACCCATGCCACCAGCCAAGAACAGCCTGGCATTCGCTGTCCGCATTAGAGAGTAATTTACACTCATGCCTCATTCACGTTGACATTGAAGCTTTTCTATTATGCTGCTACACTTTTAACTTTCTTTGGAGTTTAATATGGCTGTTTGACCATGAGAAAATGTACAAAGCACAAATTATACTACAGGTATGATTTTTCTGGACTCTCTCAAACGCCTTGATTCTAGTCCAAAATGGGAGTAATTTTCACCCTAGGCAAGCCCAATAGGGTTACACAGTCCAACGACACCTTAGACTCAAGTTACATCTTATAAAAAGAGCATAATAGGAGAACTTCAAAGAAACATTTGACCCAAAAATATAATTGCGTCATAATTGACTCGCCTTCATGTTATTTCCAACAATGTTCCATGTTATTTTCACGATGCGTCATCAGTTGACCATATTGGAAAGCAAAGCGTAAACAATGCCACTGAATGAAACTTGCATATTTTGCTGAATACTGCTGTTGAAAttagtttttgtcaagttttggCCTGTACTTAAGCACTGAAG

Function

symbol description
rpl7l1 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in several structures, including alar plate midbrain region; immature eye; nervous system; neural plate; and segmental plate. Orthologous to human RPL7L1 (ribosomal protein L7 like 1).

GO:

id name namespace
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-970 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in several structures, including alar plate midbrain region; immature eye; nervous system; neural plate; and segmental plate. Orthologous to human RPL7L1 (ribosomal protein L7 like 1).

Ensembl:

ensembl_id ENSDARG00000042864

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035954 False 1032 mRNA 0.44 6 36675083 36679233
TCONS_00035955 False 819 lncRNA 0.41 5 36675567 36679222
TCONS_00035956 False 497 lncRNA 0.43 3 36676420 36679204
TCONS_00035957 True 776 lncRNA 0.40 2 36676923 36677772

Neighbor

gene id symbol gene type direction distance location
XLOC_018258 slc5a6a coding downstream 3423 36646761 ~ 36671660 (-)
XLOC_018257 NA coding downstream 57770 36419499 ~ 36617313 (-)
XLOC_018256 lbr coding downstream 258161 36393912 ~ 36416922 (-)
XLOC_018255 si:dkey-1j5.4 coding downstream 281528 36380266 ~ 36393555 (-)
XLOC_018254 NA coding downstream 446336 36228428 ~ 36228747 (-)
XLOC_018260 ptrhd1 coding upstream 118379 36797612 ~ 36800002 (-)
XLOC_018261 slc25a27 coding upstream 122571 36801804 ~ 36809059 (-)
XLOC_018262 txlnba coding upstream 166554 36845787 ~ 36887516 (-)
XLOC_018263 cited2 coding upstream 235910 36915143 ~ 36917670 (-)
XLOC_018264 nmbr coding upstream 584430 37263663 ~ 37287107 (-)
XLOC_017928 CU539064.1 misc downstream 26621382 10053405 ~ 10053701 (-)
XLOC_018248 NA non-coding downstream 1111251 35560657 ~ 35563832 (-)
XLOC_018246 BX510920.2 non-coding downstream 1129889 35541282 ~ 35545194 (-)
XLOC_018244 BX510920.3 non-coding downstream 1164103 35510865 ~ 35510980 (-)
XLOC_018265 BX004780.1 non-coding upstream 696681 37375914 ~ 37429416 (-)
XLOC_018268 BX088644.1 non-coding upstream 930818 37610051 ~ 37611589 (-)
XLOC_018274 NA non-coding upstream 1448664 38127897 ~ 38140616 (-)
XLOC_018275 NA non-coding upstream 1457038 38136271 ~ 38136792 (-)
XLOC_018276 NA non-coding upstream 1564059 38243292 ~ 38244961 (-)

Expression


Co-expression Network