XLOC_001827


Basic Information

Item Value
gene id XLOC_001827
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 3262578 ~ 3269818 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005810
gcataatttatttttaattacaacatGAGCTGAAGGCACACTGTATACATTTCTTTTGTTCACAATTGTAATGCATATTTTAGGTCACACGTTTGGAATGCATTCacagaaacacaaaataaaatcctATGTTTCTCCCAGTGTCGTTTCCTGGCCCAACATGGGTCAGCTAAGCCATACTGTACACAAAATCCCCCCTCCCAAAAAACACCATATCAAGTTTTTGGCTGAAGCGTGGTTATCTTTCAGATACATGGCGCTACAGTATATCTAAAACATGTCTTTCAACTGAGTCAAGAACCACAGGCACAAATGATATTTTGTAAAATTCCCATAAAACTTCCATAACGATGTGCGGACAGGGCAAAATACATATTGTTCATACTCTAAAACAGTTGCATACTACAAGTTAAGCCACTGGAGTTCTCAGGTCTGGTGTGAACACTTTGATTTACAACCGAAAAGTGAGCTTTAAGGTGACGTAGTTACACACATTACATAAGTAATtacaatgaattatgcataacccttaacccaaccaacatTCTAACCTCAACCATATAGTAaagtacatgtaattaattaatggTACTCAGTAGTTAAATCAATAGTTATATCATAACCAcgtcaccttaaaataaagcgtAACCTCACTTTCTCCAACCCGTTACatgtaattaattaatggTACTCAGTAGTTAAATCAATAGTTATATCATAACCAcgtcaccttaaaataaagcgtAACCTCACTTTCTCCAACCCGTTACATGTCAGTCTGCGGTATAATTCTAGATGTTGGGACACCATATAAAACCCGCTGAATATTATACCTCTGTAAGTCTTTACAGATTTGTAAGAATGTCTTGAGGTAGCAGGAGAAAGAAACTAAAGAAATAAGCACGCTGAATCATTTTTAAGGCTTGTACTGATTCGTGATCAGCGTTTAAGAGGTTCTGACCAGATCTGTCCCACATAGAAATCTAATATATGGTAATTTATGCAAATTATGTaattaaatctgcatattttacATACAAGGTCCATATTTGGATTTCACGTAAACTCAGAAAATGACTCTTGCTGCTTGTTctaaccacttatttaaaatgagctgtaacaacacaattgttacgctgttcacaccagacgtggcacGCATAAATAATTCATGCTATTCACGTGAAAATATACGAGTAGACATTttaagtttacttgcttcattctcGCATCAAATTTGCTTTGTTTGTGTGTCTAATTCGCTTCATTCCCGAGTCAAATTCGTTttattcgcacgtcaaattcatTCGTTTGCGTGTCAAATTCGATACATTTGCGCATCAAATTCGCTTTACTCTCACGTCAAATTCGCTTCGTTTGCGTGTCAAATTCGATACATTCACGCATCAAATTCGCTTTATTCTCACGTCAAATTCGCTTCGTTTGTGTGTCGAATTCGATTAATTTCCTGCGCCAAATTTGCTTCATTCTTgcatcaaatttgcttcattcacgtgtcaaatTCGATTTATTTCCGCATCAAATTTgtttcattcgcgtgtcaaatttgCTTTATTTCCATGTCAAATTCGCTTTGTTCGCGGTTCAAATTCGATTCATTCCCacgtcaaattcgcttcattcacgcgtcaaattaGCTTCATTAGCgcatcaaatttgcttcattcccACGTCAAATTCGCCTtattcgtgcgtcaaattcacttcattcgCGTGTTGAatttgcttcattcgcgcatcaaattcgcTTAATTTGCGTGTCGAATTCGATTCGTTCCCgcgtcaaattcgcttcattccCGTGTCAAATTTGTCTCAGTCCCacatcaaattcgcttcattctCGCTTTAAATTTGCTTAATTCATGCATCAAATTCGCTTCATCCGTgcgtcaaatttgtttcattcccacgtcaaattcacttcattcaTGCATCAAATTCGCTTCACAAGTGCCACCTCATTCACGCGAATTATGTCACAGGATGTCTAttttcatctttgcattgacttaacatgtaaatccctcacgcttgacgcttcatctgcatctggtgtgaacgaagaattatgattttttttaggacaacttaattgttttacgtctaatccacttcaattttttaaaacaatcaagttaacttaatcaatttatgttttgagaacattaaggaattgtgtggaacaaaTGGAACaactcattctgattatgtacccctatatacatttctggagatcgccaaATTCGTCCGAGGAGCTTCgctttttgttttcgcgaatacaCCAAAGGCTGCTgcgtacgctttttcagatctcaatttTTTCTTGccagtgccattcgcacctgctgttctcatgtaaatccaccagaggctgctgtcgactgactgacttacagaatgactgactgaccaatcaactgacccaccctcctccttccccaaaATCCAAccgaaagtgttttcaaaagcaatccaaaaataGAAAAACCCTTGCGGCAGCCTGCTTTTTACTACCTTTTCGAATTTTACCACATcttcaccctgttattcacttgtttattttgattttggcttttgttttatctGCTTCCTGGAACCATTtttcgccagactcgaaccccgtcgtcacaatcaactctgctctgcagctcaagtctgccgatgtacgtgtcaagctaccagacaaactggcaACAGCCGTCCATACGgcggtaatcggtcagctggtaagcgagaaaaagaaatggcatcataccgcccagTAGCGTTTGTGTTATCGACGAAATGCTGCCATACGtaactggctacataattcgcgatctccagaaatgtatacagggctacattttcagaatgagccaatgttgcaatttttacatatatttccaTGCATCAGACTTCTATATAGGGTTGAACATTCATCAGGTGTACAGTAAGTACAGTAAAAGAGTAATCTGGCTCTTTGGTGACGCGCGCTTGGGTGAATCAACGTTTgttacgttttttttatttttattatttgtgtttatgcACAGCATATCATTTGATGCTTTAGATTTAAGAGTTGTTATTGACGTTATTATGATAAACCCTTACAGCAGGGTGAAATTATAAGCAGATTATTGAAATGACTTCATGTAAACAAGtagaattaaacaaaaataaaatgaaattatattaatataggcACTTAAAATAATCACCTGAATTACGACTTAATGTGAAAGTGCATGTATCATTTGTACCACTTATGTAGGGTATAAAATTAGCTTTCTTTAATAAAACTTTGGTGATCTTTAGACTTATTTTATGCATCTCAGAGAGCGACAAAAGCTTGAGATCTTTTCTAAGACGCGTTTTCTGTTCCTCAGGATGTCCTGAGCACTTCCTATAGGAAAATACAATTAAGGTTTGCTGGTAAATTGCACGTTAGAAAAACTGGAATgacttgtctttttttaatggTACTACtctaaatgttgtttaaaaaaatataaataaaatctgagTGAATCCTGAAGATGTAGCTTTCTATAAAAgattatgtttattaaaaataataataggattttttttttgggggggggggggggggggggtaaaacGCTAGTATTTACTCTCTTGATGTGGGTTGTCTTTAAATTAGACAGGGGAATCtttgttggtgtgtgtgtttacttgtttatgtggtttacgaggacaaaATTGTAAAATGACATCGGTATGAACAAGTTGTGctctcttaaagagatagttcatgcaaaaatgtacattttctgttaGTTTACTCACCCACAGGCCATCCTAGATGTATTTTagtcttcagtagaacattaaagaagattctGAGCTGAATCTGTGGTTCTTGGTGatataatggaagtgaatggtgacgggtttttagataaaaaataaacacaagcaAACGAGTCCAAATTAATAGTCATGActcctgatgacacactgagCTCTTGTGAAGCAAAACGATTAAAAAATTGaacattattaacaatattattagctttaatccacagcctggtCATTCTTTCACCATCAAAAGCGACCAGATTACTTTTGCACATTATCTGTTTGagcaggctgtggattaaagctaataatatagTAAACAATGTTCAATTTCTTATCCTTAGACCGATTGTTTTGCTTAACAAGACCTCATAGTGTCATCAGGAGCAATTTGGACTTTGTAAGTGTTTATTTTTAGCCTaaaaaacctgtcaccattcactgccattatacgTATCTTCAAGATACACAGATTCAACTAAAAACCTTCATTGTCATACTGAAGAAAAGAAGTACATCTTATATGACCTGTGGGTGAGTAAACTAACAGGAAAtcttcagttttaggtgaactatccctttaaggatgtTTACGAGGACATAacttgtgtcctcataattcaaaacgcTTAAAAATCAAATCTTTTGACGTTCAGAATTAGCTGTGAGCGTTGGGTTTATGAGTAGGGCCATATAATAAGTGTTtggtttacagtgtaaaatacattacacttatgtagagtcctcgtaaaccatatatacaagtatgtgtgtgtgttgattgcATTAAGGTCATCAGTTAAGCACAATCCAGTGATTTTCCTCTGCTGTGAGCAGGTGTTTTGGCCGCTGTGTAAACGCTTTTGTTTTGTCGCACCGCTGTGATGTCATCAGATTTCCATCAGTCCGTCTTCCACACCTTGTTAAGCACTTTAACAACTTCTTCATAGATTATGAACACTATGgccacatccatacacacccgaCCTAACCTGGGGACTGTGCCTTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005810 True 4841 lncRNA 0.37 2 3262578 3269818

Neighbor

gene id symbol gene type direction distance location
XLOC_001826 hic2 coding upstream 106621 3145707 ~ 3155957 (+)
XLOC_001825 ckmt2a coding upstream 132691 3111004 ~ 3129887 (+)
XLOC_001824 rasgrf2a coding upstream 155816 3049636 ~ 3106762 (+)
XLOC_001822 zfyve16 coding upstream 236055 2975974 ~ 3026523 (+)
XLOC_001823 NA coding upstream 283074 2977535 ~ 2979504 (+)
XLOC_001828 zgc:56235 coding downstream 30011 3299829 ~ 3322338 (+)
XLOC_001829 brap coding downstream 66954 3336772 ~ 3359189 (+)
XLOC_001830 CU570980.1 coding downstream 138965 3408783 ~ 3408900 (+)
XLOC_001831 ptpn11a coding downstream 158376 3428194 ~ 3455639 (+)
XLOC_001832 rph3aa coding downstream 238043 3507861 ~ 3510876 (+)
XLOC_001815 FP085363.1 non-coding upstream 573897 2688565 ~ 2688681 (+)
XLOC_001807 NA non-coding upstream 758536 2499533 ~ 2504042 (+)
XLOC_001806 NA non-coding upstream 824670 2402308 ~ 2437908 (+)
XLOC_001804 NA non-coding upstream 1271110 1966857 ~ 1991468 (+)
XLOC_001834 NA non-coding downstream 587249 3857067 ~ 3857885 (+)
XLOC_001839 NA non-coding downstream 1019887 4289705 ~ 4299850 (+)
XLOC_001840 NA non-coding downstream 1045145 4314963 ~ 4318863 (+)
XLOC_001841 NA non-coding downstream 1065374 4335192 ~ 4341646 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G370735 NA non-coding CI01000168 null 1262779 ~ 1263197 (+)