Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_018270 |
| gene name | batf3 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 37812699 ~ 37813863 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| batf3 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human BATF3 (basic leucine zipper ATF-like transcription factor 3). |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041014-356 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human BATF3 (basic leucine zipper ATF-like transcription factor 3). |
| ensembl_id | ENSDARG00000042577 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00035975 | True | 716 | mRNA | 0.42 | 3 | 37812699 | 37813863 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_018269 | adat2 | coding | downstream | 52218 | 37733181 ~ 37760481 (-) |
| XLOC_018267 | hivep2a | coding | downstream | 183615 | 37511067 ~ 37629084 (-) |
| XLOC_018268 | BX088644.1 | coding | downstream | 201110 | 37610051 ~ 37611589 (-) |
| XLOC_018266 | si:ch211-202p1.5 | coding | downstream | 322087 | 37475836 ~ 37490612 (-) |
| XLOC_018265 | BX004780.1 | coding | downstream | 383283 | 37375914 ~ 37429416 (-) |
| XLOC_018271 | nsl1 | coding | upstream | 482 | 37814345 ~ 37820939 (-) |
| XLOC_018272 | si:ch211-147d7.5 | coding | upstream | 17489 | 37831352 ~ 37831939 (-) |
| XLOC_018273 | angel2 | coding | upstream | 106233 | 37920096 ~ 37934315 (-) |
| XLOC_018274 | NA | coding | upstream | 314034 | 38127897 ~ 38140616 (-) |
| XLOC_018275 | NA | coding | upstream | 322408 | 38136271 ~ 38136792 (-) |
| XLOC_017928 | CU539064.1 | misc | downstream | 27758998 | 10053405 ~ 10053701 (-) |
| XLOC_018257 | NA | non-coding | downstream | 1195386 | 36419499 ~ 36617313 (-) |
| XLOC_018254 | NA | non-coding | downstream | 1583952 | 36228428 ~ 36228747 (-) |
| XLOC_018248 | NA | non-coding | downstream | 2248867 | 35560657 ~ 35563832 (-) |
| XLOC_018276 | NA | non-coding | upstream | 429429 | 38243292 ~ 38244961 (-) |
| XLOC_018277 | NA | non-coding | upstream | 544498 | 38358361 ~ 38373094 (-) |
| XLOC_018279 | BX569783.1 | non-coding | upstream | 690870 | 38504733 ~ 38508521 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
