XLOC_018271 (nsl1)


Basic Information

Item Value
gene id XLOC_018271
gene name nsl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 37814345 ~ 37820939 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035976
TCCagggtttattttgaaaaataagcgGCAGTCATGGAGGAAGATCGTGAGAGCGGGCCGGATTTTAGAATAAATGTCAAGTCGAAAAAAATAGTTCGCAATCAGCTTGAAAAGTATAAAGACCTATTTAAAAAGTTACTCGATGGCCAATGCAATATTTCCGAGGAAGACAAGGCCAAACTGCTGCAAGAAATGGTTGTGAACTTTGAGTTCACAGTGCAGGAAAATATAGTTATTGGTGGATTGTCATGGGATGAGACGTCAGAGGAATACTGTGAAGACTATGAGAGCACAGTAAACAACATTCTGGATGAGAAGATTGTAGAGACTGCCTCCAAACGCAGCTCTTACCCAAAGCAAATACGCAACTATGTCGTGCGATCATTAAAAGCAGAGAGGAAACTTTTGGGCCTGTATGAACAGACAGTGAAGCCACAAGACATAAAGCCGGATCCTGCTCAAGACAATGTCATCAGCAATATATCCGCTGCTGCACCTTCAATGTTCAAACAAGCCAGTACTGTAATGAAGTCTCTGAAAAGTCTGAAACAGGCAGCCGAGGGTTTGCATCAAGTGCTTGTCATGCAGCCTTCAGCGGAGTCGCTGGATATCTACAGAGAAGTGTTGGGCAGCTCAGTTGGAAACGTCTGTCCTTCCATCATCAAAAGAGATGCAGCTGATTCAGAATACAGTGCAGACTATGTTCCTGCAGCAAAAATCACCAAAAAGACTGatgtaaatgtcatttaatgtgtATTTGATGGCGTATGTACATTGTTGTGTGGGAATGGGGAAGTGTTGTATTATATGAGGATCTTGCATGTTGATTCCTATTCATTTcatgtatataaatattcaaGTATGTTGCGTCTGTAGCTCAGATGGAAATTCGTGTTTCACCACTTTCCTTTTCCATTAAAtctgtttaattatatttttagagAACTATTGTGCTGTTGTGGTCCAGGTTTACACCACAAGGTGTTAATGGTTTACCAGTGTTGGTTTGCAAatttaacttaaactttaaaCTGTAACTAAAATTCTgtgtaaataacaataaaaactggcaattatgtatatttaaattgaTAAAAGAGGTTTATTTATTGTCAATAGTCTGACTTAACTGCAAAGTAAATCGTTTAAGAGTAATATAAGGGTTGTATTCTGTTTCAAATAAACTTAGTATAGTGTCAAA

Function

symbol description
nsl1 Predicted to be involved in mitotic sister chromatid segregation. Predicted to be located in kinetochore. Predicted to be part of MIS12/MIND type complex. Orthologous to human NSL1 (NSL1 component of MIS12 kinetochore complex).

GO:

id name namespace
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0000776 kinetochore cellular_component
GO:0000444 MIS12/MIND type complex cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-041014-362 Predicted to be involved in mitotic sister chromatid segregation. Predicted to be located in kinetochore. Predicted to be part of MIS12/MIND type complex. Orthologous to human NSL1 (NSL1 component of MIS12 kinetochore complex).

Ensembl:

ensembl_id ENSDARG00000024471

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035976 True 1201 mRNA 0.38 6 37814345 37820939

Neighbor

gene id symbol gene type direction distance location
XLOC_018270 batf3 coding downstream 482 37812699 ~ 37813863 (-)
XLOC_018269 adat2 coding downstream 53864 37733181 ~ 37760481 (-)
XLOC_018267 hivep2a coding downstream 185261 37511067 ~ 37629084 (-)
XLOC_018268 BX088644.1 coding downstream 202756 37610051 ~ 37611589 (-)
XLOC_018266 si:ch211-202p1.5 coding downstream 323733 37475836 ~ 37490612 (-)
XLOC_018272 si:ch211-147d7.5 coding upstream 10413 37831352 ~ 37831939 (-)
XLOC_018273 angel2 coding upstream 99157 37920096 ~ 37934315 (-)
XLOC_018274 NA coding upstream 306958 38127897 ~ 38140616 (-)
XLOC_018275 NA coding upstream 315332 38136271 ~ 38136792 (-)
XLOC_018276 NA coding upstream 422353 38243292 ~ 38244961 (-)
XLOC_017928 CU539064.1 misc downstream 27760644 10053405 ~ 10053701 (-)
XLOC_018265 BX004780.1 non-coding downstream 384929 37375914 ~ 37429416 (-)
XLOC_018257 NA non-coding downstream 1197032 36419499 ~ 36617313 (-)
XLOC_018254 NA non-coding downstream 1585598 36228428 ~ 36228747 (-)
XLOC_018248 NA non-coding downstream 2250513 35560657 ~ 35563832 (-)
XLOC_018277 NA non-coding upstream 537422 38358361 ~ 38373094 (-)
XLOC_018279 BX569783.1 non-coding upstream 683794 38504733 ~ 38508521 (-)

Expression


Co-expression Network