XLOC_018273 (angel2)


Basic Information

Item Value
gene id XLOC_018273
gene name angel2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 37920096 ~ 37934315 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035980
ATCTGGGTTTGTTTTGCTAGCTTGTAGCATCGCTAGACGTGATTTCACACTTTTTGGGCTTTCGCCTAGCTGAGATGGTGCCCAGAAAAGTGGGTTTATGAGAAAAGGGCGTCACATGCCTCGACACACTAATGCTAACTATGCCAGACCAGGAGTGTCTCCAAATCATCCCATGTTTGGCCGTTACCTGAGTACAGTAGGCTTCCCGCCAGCTCAGAACGTCTACAACCACTGGAGACACTGGTATCAGCCTGGTCATTTATGGTGGACGCAGCCACCACAGCTGCAGCATCCCTCATCCTCCTTCAGCACTGTCAGACACCCGTTCAATAGACCCCCGAGACCTCCGGATCCGTACCAGTGGAGCTCCTGGAGGCAAACTGGAGTACTGCCCCACACTCGAGGCCTTCACCTTTCTGCAGGTCTGATGGAGAGCACTGACAGACCCCCACCACAGAAGAGGAGGAAGAGCGCAGAAGGGGAAATATCTCAGCGCTCACCTCAACATTCACCTCCGAAAGGCAGCAGGAGTCCAAAAGGAAGTCCTGAATGGCTGCGCAATGTATCTAGCATTGAAGTTGCAAATAGGACTTCAGCCGTACCTGAACTGAAGAGACACTGGGAGGATCTTTCTCATCTGTGCAAAGCTGCACCATCTGTGAACCGAGGGAAGCAAAAATGGCCGTTTGACTTTTCGGTGATGTCCTATAATATCCTCTCTCAAGATCTGCTCTGTGATAACACATACCTTTACAGACACTGTAATCCTCCTGTTCTGGACTGGCGCAATAGGTTTCCTAATATAATCAAAGAGCTGGAACAGTACAGTGCTGATATAATGTGCCTGCAGGAGGTGCAAGAGGACCACTATAAACAACAGATCAAGCCCTCACTAGAATCTTTAGGCTACCACTGTGAATTCAAGCGGAGAACGGGTCTCAAGCCTGACGGATGTGCAGTGATCTTCAAACGCGAACGCTTCTCTCTGGTTTCCTGTCACCCTGTGGAGTATTTCCGCCGTGGCGTCCCGCTCATGGACCGAGATAACGTGGGCCTGATTGTGCTGCTGCGGCCCATTGATCCTCATGTCTCTCTCTCCAACATCTGTGTGGCTAACACACATTTACTCTACAACCCTAGACGTGGGGACATTAAACTGGCCCAGCTGGCTATGCTGCTGGCAGAGATAAGCCGCGTGTCCCAGTTACCTGACAGCAGCGTTTGTCCTGTGCTGCTCTGTGGGGATTTTAACTCTGTTCCCTGGTCACCCCTCTATCGCTTTATTAAGGACAGAAGGCTGGACTACGATGGCATGCCTATTGGGAAGGTGTCAGGACAGGAGGAGACCCCAAGAGGGCAGCGTATTTTGACTGTGCCAATTTGGCCCAGAAGTCTAGGCATCTCTCAGCAGTGCCAGTATGAAAACCAAACTAGAGATTCTGAGTTAAGAGATTTGGAGCAGACTGAAAGGGAAAGTTTTACCGAAGCCAGCATAGAGCACTGTTTAAGGCTGACGTCTGCGTACTCGCATCACCTGAAAGAGAGCGGTCAACCCGAGATCACAACATGCCACTCACGGACCGCCATCACTGTCGATTACATCTTCTACTCTGCGGCTCTGGGAGACGTGATGGCACAAGCAGAGTACAGTGCTCCGCCAGAGAGGGGTCTACAGCTGCTGGGCAGGTTAGCTCTAGTGGGAGAAAAGGAACTCCAGAAGGTTAATGGCCTTCCCAACCAGCACAACTCCTCTGACCACCTGCCACTTCTGACACGTTTTCGTCTGCACCCTCAAGCCGACAGCTGACAGAACAAAAGTGCTTGTGAATATCATATGTGTTGCCTTTGAACATGTTTTGGGGCAGAATAAGAGGGAAGCAAAGAAATCATTTACAGATCCTTTAAGCTCGAGAAGTGTCATTATGAACATTGTTTTAGCTGGTGCATTATGGGATGGTGACATGCTTGCTGGAACAACCAAATGAgggatggtttttttttttggaacaaggCAGCTTTGACACCAAGCAAGTGATTTCATAaagatattaatatttttttattttcaaggttTTACGAAATGTCTCTTTCACTTGCGTCATTTTAAAGTGATAAAAAAAAGAGGatgaaaaatgaataattttatctTCAAGCTGGCATATGTGTAATTTTAGTTTCCTGAAATAAAAAGGAcaatatataaaattacaaacatttttttctgatgATCTAAGTTTGAAATATATTTGAGTTCCATTGTCTTAAGTTAACACAAATACCTTTCTCAATTACATTACTTGATTAAtcgtatttgtaaaaaaaaattctccaccttttttttcatgatttttccaATAAAAGCTAAAAGTCTGAtcaacatgaa
>TCONS_00035981
AGCTTGTAGCATCGCTAGACGTGATTTCACACTTTTTGGGCTTTCGCCTAGCTGAGATGGTGCCCAGAAAAGTGGGTTTATGAGAAAAGGGCGTCACATGCCTCGACACACTAATGCTAACTATGCCAGACCAGGAGTGTCTCCAAATCATCCCATGTTTGGCCGTTACCTGAGTACAGTAGGCTTCCCGCCAGCTCAGAACGTCTACAACCACTGGAGACACTGGTATCAGCCTGGTCATTTATGGTGGACGCAGCCACCACAGCTGCAGGAGGTGCAAGAGGACCACTATAAACAACAGATCAAGCCCTCACTAGAATCTTTAGGCTACCACTGTGAATTCAAGCGGAGAACGGGTCTCAAGCCTGACGGATGTGCAGTGATCTTCAAACGCGAACGCTTCTCTCTGGTTTCCTGTCACCCTGTGGAGTATTTCCGCCGTGGCGTCCCGCTCATGGACCGAGATAACGTGGGCCTGATTGTGCTGCTGCGGCCCATTGATCCTCATGTCTCTCTCTCCAACATCTGTGTGGCTAACACACATTTACTCTACAACCCTAGACGTGGGGACATTAAACTGGCCCAGCTGGCTATGCTGCTGGCAGAGATAAGCCGCGTGTCCCAGTTACCTGACAGCAGCGTTTGTCCTGTGCTGCTCTGTGGGGATTTTAACTCTGTTCCCTGGTCACCCCTCTATCGCTTTATTAAG
>TCONS_00035982
ATCTGGGTTTGTTTTGCTAGCTTGTAGCATCGCTAGACGTGATTTCACACTTTTTGGGCTTTCGCCTAGCTGAGATGGTGCCCAGAAAAGTGGGTTTATGAGAAAAGGGCGTCACATGCCTCGACACACTAATGCTAACTATGCCAGACCAGGAGTGTCTCCAAATCATCCCATGTTTGGCCGTTACCTGAGTACAGTAGGCTTCCCGCCAGCTCAGAACGTCTACAACCACTGGAGACACTGGTATCAGCCTGGTCATTTATGGTGGACGCAGCCACCACAGCTGCAGCATCCCTCATCCTCCTTCAGCACTGTCAGACACCCGTTCAATAGACCCCCGAGACCTCCGGATCCGTACCAGTGGAGCTCCTGGAGGCAAACTGGAGTACTGCCCCACACTCGAGGCCTTCACCTTTCTGCAGGTCTGATGGAGAGCACTGACAGACCCCCACCACAGAAGAGCAGCAGGAGTCCAAAAGGAAGTCCTGAATGGCTGCGCAATGTATCTAGCATTGAAGTTGCAAATAGGACTTCAGCCGTACCTGAACTGAAGAGACACTGGGAGGATCTTTCTCATCTGTGCAAAGCTGCACCATCTGTGAACCGAGGGAAGCAAAAATGGCCGTTTGACTTTTCGGTGATGTCCTATAATATCCTCTCTCAAGATCTGCTCTGTGATAACACATACCTT
>TCONS_00035983
TCAAACGCCATCACATCTGGGTTTGTTTTGCTAGCTTGTAGCATCGCTAGACGTGATTTCACACTTTTTGGGCTTTCGCCTAGCTGAGATGGTGCCCAGAAAAGTGGGTTTATGAGAAAAGGGCGTCACATGCCTCGACACACTAATGCTAACTATGCCAGACCAGGAGTGTCTCCAAATCATCCCATGTTTGGCCGTTACCTGAGTACAGTAGGCTTCCCGCCAGCTCAGAACGTCTACAACCACTGGAGACACTGGTATCAGCCTGGTCATTTATGGTGGACGCAGCCACCACAGCTGCAGCATCCCTCATCCTCCTTCAGCACTGTCAGACACCCGTTCAATAGACCCCCGAGACCTCCGGATCCGTACCAGTGGAGCTCCTGGAGGCAAACTGGAGTACTGCCCCACACTCGAGGCCTTCACCTTTCTGCAGGTCTGATGGAGAGCACTGACAGACCCCCACCACAGAAGAGGAGGAAGAGCGCAGAAGGGGAAATATCTCAGCGCTCACCTCAACATTCACCTCCGAAAGGCAGCAGGAGTCCAAAAGGAAGTCCTGAATGGCTGCGCAATGTATCTAGCATTGAAGTTGCAAATAGGACTTCAGCCGTACCTGGTAAATGATTTGGATGGTGCTATTCATTCATTTGGATGCACTGGTTTGTGGGTTGTTGATATGATGTTGTATTTTTACTGTCACACATgacaaaaaatttatataattagtATTGTGATTGTTTCAAATGCAGTAAATAGTTAAACATT
>TCONS_00035984
ATTCAATGGTCTGTTTAAATAACCCAGCTGGACTGTTTTGTCTCCAGTAGATGCGAGTAACTGTTATCTTCGTAAGAtgaaatatgtttattaaattacaaacatttgCGCTGTGACTAATATATTGCATATGTGAGGCTTTACACAAATGTTCGGTCAAAATAACCGAGCATGAGAGCATCCACAGCCAAAGAAGACAAACAGGACAGACACGATCTGAAAATCTGAGCATTTCACCCGGACACCGACAGCAATCGTTTAACATCTGGATCTAGTGTTCCGCGGTGCGTTCATCGCGGATTTTCAGTCATCCCATGTTTGGCCGTTACCTGAGTACAGTAGGCTTCCCGCCAGCTCAGAACGTCTACAACCACTGGAGACACTGGTATCAGCCTGGTCATTTATGGTGGACGCAGCCACCACAGCTGCAGCATCCCTCATCCTCCTTCAGCACTGTCAGACACCCGTTCAATAGACCCCCGAGACCTCCGGATCCGTACCAGTGGAGCTCCTGGAGGCAAACTGGAGTACTGCCCCACACTCGAGGCCT

Function

symbol description
angel2 Predicted to enable 3'-5'-exoribonuclease activity and mRNA 3'-UTR binding activity. Predicted to be involved in 3'-UTR-mediated mRNA stabilization. Orthologous to human ANGEL2 (angel homolog 2).

GO:

id name namespace
GO:0070935 3'-UTR-mediated mRNA stabilization biological_process
GO:0005575 cellular_component cellular_component
GO:0000175 3'-5'-exoribonuclease activity molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6498 Predicted to enable 3'-5'-exoribonuclease activity and mRNA 3'-UTR binding activity. Predicted to be involved in 3'-UTR-mediated mRNA stabilization. Orthologous to human ANGEL2 (angel homolog 2).

Ensembl:

ensembl_id ENSDARG00000016743

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035980 False 2383 mRNA 0.46 9 37920096 37933255
TCONS_00035981 False 709 mRNA 0.52 4 37925158 37933237
TCONS_00035982 False 691 mRNA 0.51 4 37928399 37933255
TCONS_00035983 False 768 lncRNA 0.48 2 37930341 37933269
TCONS_00035984 True 550 processed_transcript 0.48 2 37930687 37934315

Neighbor

gene id symbol gene type direction distance location
XLOC_018272 si:ch211-147d7.5 coding downstream 88157 37831352 ~ 37831939 (-)
XLOC_018271 nsl1 coding downstream 99157 37814345 ~ 37820939 (-)
XLOC_018270 batf3 coding downstream 106233 37812699 ~ 37813863 (-)
XLOC_018269 adat2 coding downstream 159615 37733181 ~ 37760481 (-)
XLOC_018267 hivep2a coding downstream 291012 37511067 ~ 37629084 (-)
XLOC_018274 NA coding upstream 193582 38127897 ~ 38140616 (-)
XLOC_018275 NA coding upstream 201956 38136271 ~ 38136792 (-)
XLOC_018276 NA coding upstream 308977 38243292 ~ 38244961 (-)
XLOC_018277 NA coding upstream 424046 38358361 ~ 38373094 (-)
XLOC_018278 itpkb coding upstream 451967 38386282 ~ 38449903 (-)
XLOC_017928 CU539064.1 misc downstream 27866395 10053405 ~ 10053701 (-)
XLOC_018268 BX088644.1 non-coding downstream 308507 37610051 ~ 37611589 (-)
XLOC_018265 BX004780.1 non-coding downstream 490680 37375914 ~ 37429416 (-)
XLOC_018257 NA non-coding downstream 1302783 36419499 ~ 36617313 (-)
XLOC_018254 NA non-coding downstream 1691349 36228428 ~ 36228747 (-)
XLOC_018248 NA non-coding downstream 2356264 35560657 ~ 35563832 (-)
XLOC_018279 BX569783.1 non-coding upstream 570418 38504733 ~ 38508521 (-)

Expression


Co-expression Network