XLOC_001828 (zgc:56235)


Basic Information

Item Value
gene id XLOC_001828
gene name zgc:56235
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 3299829 ~ 3322338 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003644
AAACACTCCGCTGACACAAACGCGCATGCGCAGTTAGTCTCCTTCACTTTGTCCTGTTAGCAGTTAAGTGTCAAATCTGAAACACAGGACAGCAAAAACCTTCTGCTTTCTTTTCGCTTCATCGTTTTGTCTGCCTGCGCAACAGCGTCCTCGTCATAATGGCTGTTCCTCCTGCGTATTCAGACCTGGGAAAATCGGCCAAGGACATTTTCAGCAAGGGTTACGgtTTTGGCATTGTTAAACTGGACCTCAAGACTAAATCTCAAAATGGAGTGGAGTTTAACACATCTGGATCAACCAACACGGACACGGGAAAAGCCGCCGGGAGTTTGGAGACCAAGTATAAGCTGAAGGATCTGGGTTTGAGTTTCAACCAGAAGTGGAACACGGACAACATGCTCACGACTGAAGTCTCTGTGGAAGACCAGCTTGCAGAGGGGCTCAAAGTGGCCCTGGACACATCTTTTGTACCAAACACCGGCaagaagagcggtaaactgaagACCAGCTACAAGCGGGAGTTCGTCAACGTGAGCTGTGACCTTGATTTCGAGGGTCCGGTCGTTCATTCTGCAGCTGTGTTGGGATACGAAGGCTGGCTCTTGGGATACTTGGTGGCGTTTGACACAGCCAAGTCCAAACTGGTGCAAAACAACTTCGCTCTGGGATACAAGACTGGAGACTTCCAGCTTCACACTAATGTTAATGATGGTGCAGAGTTTGGTGGATCTGTGTATCAGAAGGTCAGCGATCAGCTGGAGACGGCCGTCACTTTAGCCTGGACCGCCGGCAGCAACAACACACGGTTCGGAGTTGCTGCGAAGTACCAGCTAGATAAAGATGCCTCGCTGTCTGCTAAAGTGAACAACGCGAGTCTGATTGGAATTGGTTACACTCAGAGTCTTCGACCAGGGGTGAAACTGACTCTCTCGGCTCTCGTTGATGGGAAAAACTTCAACACCGGCGGACACAAGGTTGGACTGGGGTTTGAGTTGGAAGCGTAAAAACCGAAGAAGCGTCCTCACTTCCTCTCTCACAGCCCTTCTGCACTACATCACACACTCTAGCACTCCACGACTCGAACACTTAGCAGCATGTTGACGGTTTTCGCAAGTCTGTGTGTGAATCGCCGAAAGATCTGGCCTTCTAAGGGAAATATTTGCCGGTCacctaatttatttaatgaagGCCGTATATTTACAGAGCACCTGCAGCAAACCAAAATACACAAGTAGCGGTAGATTAGCAAGCATTGGGGAATGTTTCTCTGGTGATGTCAGCGCATGCTAAGCACTTATGTTTCGCAGCGGAGGTCAGAAACTGCACGAGGGTAGCTGAGGTTATTTCTCAGGACGGTTGTTAGAGTGACGTTGCACTTCTTGGGTTTTAGGCTATTGAGAGCGCTCACAGGAAACCGAAGAGACAGCAGACGCGTGTGTATTTTTAGAGCTTGCAACACTTTCTTTTACATTCATTGATGGTTAGAGAGCAACTCTGTATTGTGGAGGAAATCGCAAGTAGAAACCCACTTCAAATGTGCTGCTGTGAGcaattgtatttataaaatacCAACTGCTTTgggtaaatattaatataattgtatACTGGCCATTTTCAAGGTGTTTCAATTCCCACAGCTGTATGTgtgctttatttatatatacacacacacacagttgaattattcgcccccctgtttatttttttctcctcaatttaatggagagcagatttttcaacacatttctaatcataatagttttaataactcatctctaataactgatttattttatctttgccatgatgacagtacataatattttaatgagaattaagacacttctatatagcttaaagtgacatttaaaggcttaattgggttaattaggataactaggcaggttagggtaatcggGTAAGGTaatatataatgatggtttgttttgttgactatcgagaaaaaaaatatagcttaaaggggctaataattttgaccttaaaatggtgtttaaaaaattaaaaactgcttttattctagccgaaataaaacaaataagactttctccagaagaaaaaatattatcagacatactgtgaacatttccatgctctgttaaacatcatttgggaaatatttaaaaaaagaagaaaaatttaattttaaattaaaggggggttaaaaattctgacttcaactgtatatacactgcattcggaaagtattcatagcgttcacgttttccacatttgtttgttacaggcttattccaaaatggattaaattcatttatttcctcaacattctacacacaatcccccataatgacaatgtgaacaaagagtttttgaaatttttgcaaatttattaaaaataaaaaagctgaaaaatcacctgtacatcagtattcacagcctttggcgcgaagctctaaattgagctcaggtactgtacattcttccagcaggacaatgacccaaagcacaccatcAAAATATctatggcttcacaacaactctgtgaaatgttcttgagtggcccagtcagagcccaggcctaaatcctattgaacatctctgaagagagatctgaaaatggctgaacaCCATCAcctcccatccaacctgatagagcttgagaggtactgcaaagaggaatgggcaaaaattcccaaatacAGGTGTGCCAAAcatgtggcatcatattcaaaaagacttgaggctgtaattgctgccaaaggtgcatcaacaaagtattgagcaaaggctgagaATACTAATGTAGATGtggtttttcagcttttttatttttaataaatttgcaacaatttcaaaaactcttttcacattgtcattatgggggattgtgtgtagaatgttgaggaaataaatgaatttaatgcatgttggaataaggctgtgacataaacaaatgtggaaaaagtgaagcgctatcaatacttttcggatacacacacacacaaaaactgtataggtacaaaagctgtcactgaggtACATTTTAGGTCCTAATATGGAACTTTTAGGTACTagtatattcaccttattctcagcggTCTTTTTGGCTCGAGTCTTCCGGTCTCATTCaattctattcatttttagacgttaatatcagcttgttatgctgctagatgttgcaaactgatgttctcatattatattattctactttgtctgtatagtcatgcaaacacttgctTGTAAATGTTTTCTGCCTATTATTatccctagtcatttctcccataggcaactgaattggaagttcttaAACAATCAGAAAAAACATGTGCACGTCCACATTGAAGAGTAAGGTCTATAACTTTAAAGGAGATCTATTaggcccctttttacaagatgtaaaataagtccctAGAGGACGACCcaggagtgtgtatgtgaagtttcagctcaaaatacttcacaaaaatgttttaaagctcTTTGAAattgacccttttaggctttgatccaaattgtggcgttttggtgactgtcgctttaaattcaaatgagattgtgctcttttcaaaagagggtggagctatgaacgcctatgtgtcagcatagtggcagatttaaaactcTGATGGTGGATGGCTGCTtcacactcagggctgtttatgctaatgagggagagatggtcactaatgggcggggcttttccccttctgatgacatgtacaatggGGTAATGTCAATCAaattgtttctgcagactgttttatgaAGCGTGATTATAAAAAATCATAGAACGAATAAATGTGTATCATTAGAGGCTGGTtacattcacacactgctgccacacaactgtgtttaaaccccttataaaagtgatttttgcataatagctcccctttaaggTATCAACATGAATTCTTTAGGTACTAACATGTACCTAAGGGCATCACCCCAGTGACtgcttttgtaaatatatatatttctacatTCATACTACGGCGCTGtagaatgcttgattctgattggctgataaacatTCTAAGGTATCCCTGAACAGTCAAAGATCACATCAAAACAAGACTTGAGGCTTTGGATGAGATGCGTATGAAACTAGTCCCACACAGAGGAGCtttttgaggacaaaaacctgacaaatgtttAAAACACACCATCTGAACCCTGTCTTTAGTAGCAGTAACCGTAGTATAATAACACTGACTCAGTCTGGACTggtgaattattagaaaataatgcacacccagGGTGTAAAGGACACTCAGCTACACATCAGTACCTTAGGCATGCATAGgtttgtcacaatactggaattagATACCAATCGGTACTGGAATTTTAAAAACCACAAACATTTGAGCATCGCTGTTGAGCAtattcttaaacagtgctgatttgccattgtgctcgcatgctcaacagaaatggctgTCAAGGTCATCaattcaccgaactcaccgcacTTTActaagtgtaaccacagataaaaggacactggagcgttttaaagtcacgtcaatcagctggtttgtccagTCTCCCTGTATCCGTGGTTACACtcggtaaacagtggtgagttcagagaactgatgaccttcacggccaatcacatccatttctgttgagcatgtgaagaAAATGGCAAACCAGCACTGAacacgctcaaatgttagcgggaaataaacgtttttaaaatttcggTAGTGATTTGCATTGATTTCccgtatcgtgacaaccctaggcGTGCAttctttttataataatttaatggcCTGTGTATGTATAGTGAAGCCCGAAATTAtttatacccctggcaaattctgacttactttttaaggttttttttgaCCGGAAATGTCACAGGCTTCTTTCAGAAGATAATAAGATCAGGTACAAGAGGCATCagtgtgtaaaaaaaatatatatatatttctcagcttttatttacatttgaacaatattttttgatgatttgatgatgaaaatgtctgaattagagctgcacgattctggctaaaatgagaattgcgattttttttttttttgcttaaaataaagatcacaattctctcacgattctgtagatgtaaaataaaggtatggtaaaaacaaacatcgataataatattatgtgtgggtctactggtttttataaataattctattctacttataataattctgatgttgaattattatgtttgagatatgcttgcaatctgtcatattgaACAATTTTATTctctggtaaaatcagacatttaccattatcagattattttcaatatataggctagagtagttatactgacattgtaaacatttattttcatgcacaacatcattaactgaagacaaaaatgacatttttaggtgaattataccttataaatacagtatgtgactcattcaacatcatttggaggtgtcagtcAGCAACGCAtgtaaaacaatcaaaaaactcgtgcagccgccttttcttctctcctgaacttgaaaatatgattggcagaatcatagaaatgctggattaagatcgtctaggggttgaatcgagattgcgatcttttaacgattaattgtgcaggtCTAGTCTGAATTTTCCAGGGGTGTGAATAATTTCAGGTTTGACTgtgtaaatatacacacacacacacacacacacacacacacatagtcaaACTAATTTTAGAACTGAAGACCTTGGTCTCTGTACCCCATTTTCCAGTGGCAActgaaaaattctaataaaaagtGAAAACAGTCGT
>TCONS_00005671
GTTAGCAGTTAAGTGTCAAATCTGAAACACAGGACAGCAAAAACCTTCTGCTTTCTTTTCGCTTCATCGTTTTGTCTGCCTGCGCAACAGCGTCCTCGaatGTCCATTGCAGTGGACCAAAGGACCATTTTAGTACGAAACGACCgtcactcagacaacaaaactgcacaggatatggctgtaaagggatattaatccaataataatTCATAATGGCTGTTCCTCCTGCGTATTCAGACCTGGGAAAATCGGCCAAGGACATTTTCAGCAAGGGTTACGgtTTTGGCATTGTTAAACTGGACCTCAAGACTAAATCTCAAAATGGAGTGGAGTTTAACACATCTGGATCAACCAACACGGACACGGGAAAAGCCGCCGGGAGTTTGGAGACCAAGTATAAGCTGAAGGATCTGGGTTTGAGTTTCAACCAGAAGTGGAACACGGACAACATGCTCACGACTGAAGTCTCTGTGGAAGACCAGCTTGCAGAGGGGCTCAAAGTGGCCCTGGACACATCTTTTGTACCAAACACCGGCaagaagagcggtaaactgaagACCAGCTACAAGCGGGAGTTCGTCAACGTGAGCTGTGACCTTGATTTCGAGGGTCCGGTCGTTCATTCTGCAGCTGTGTTGGGATACGAAGGCTGGCTCTTGGGATACTTGGTGGCGTTTGACACAGCCAAGTCCAAACTGGTGCAAAACAACTTCGCTCTGGGATACAAGACTGGAGACTTCCAGCTTCACACTAATGTTAATGATGGTGCAGAGTTTGGTGGATCTGTGTATCAGAAGGT

Function

symbol description
zgc:56235 Predicted to enable voltage-gated anion channel activity. Predicted to act upstream of or within anion transmembrane transport and regulation of cilium assembly. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be part of pore complex. Predicted to be active in mitochondrial outer membrane. Orthologous to human VDAC3 (voltage dependent anion channel 3).

GO:

id name namespace
GO:1902017 regulation of cilium assembly biological_process
GO:0098656 anion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0005739 mitochondrion cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0008308 voltage-gated anion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-954 Predicted to enable voltage-gated anion channel activity. Predicted to act upstream of or within anion transmembrane transport and regulation of cilium assembly. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be part of pore complex. Predicted to be active in mitochondrial outer membrane. Orthologous to human VDAC3 (voltage dependent anion channel 3).

Ensembl:

ensembl_id ENSDARG00000116680

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003644 False 5765 mRNA 0.39 9 3299829 3322338
TCONS_00005671 True 799 lncRNA 0.47 8 3299884 3312438

Neighbor

gene id symbol gene type direction distance location
XLOC_001827 NA coding upstream 30011 3262578 ~ 3269818 (+)
XLOC_001826 hic2 coding upstream 143872 3145707 ~ 3155957 (+)
XLOC_001825 ckmt2a coding upstream 169942 3111004 ~ 3129887 (+)
XLOC_001824 rasgrf2a coding upstream 193067 3049636 ~ 3106762 (+)
XLOC_001822 zfyve16 coding upstream 273306 2975974 ~ 3026523 (+)
XLOC_001829 brap coding downstream 14434 3336772 ~ 3359189 (+)
XLOC_001830 CU570980.1 coding downstream 86445 3408783 ~ 3408900 (+)
XLOC_001831 ptpn11a coding downstream 105856 3428194 ~ 3455639 (+)
XLOC_001832 rph3aa coding downstream 185523 3507861 ~ 3510876 (+)
XLOC_001833 pla2g3 coding downstream 197918 3520256 ~ 3532997 (+)
XLOC_001823 NA non-coding upstream 320325 2977535 ~ 2979504 (+)
XLOC_001815 FP085363.1 non-coding upstream 611148 2688565 ~ 2688681 (+)
XLOC_001807 NA non-coding upstream 795787 2499533 ~ 2504042 (+)
XLOC_001806 NA non-coding upstream 861921 2402308 ~ 2437908 (+)
XLOC_001834 NA non-coding downstream 534729 3857067 ~ 3857885 (+)
XLOC_001839 NA non-coding downstream 967367 4289705 ~ 4299850 (+)
XLOC_001840 NA non-coding downstream 992625 4314963 ~ 4318863 (+)
XLOC_001841 NA non-coding downstream 1012854 4335192 ~ 4341646 (+)

Expression


Co-expression Network