XLOC_018281 (slc30a2)


Basic Information

Item Value
gene id XLOC_018281
gene name slc30a2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 38595935 ~ 38617766 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035992
GAAAGTTGCCCAAACCTGCCTTTGGGAAATGGTGAAATGGCTGGTGCTATTGAGCTCAAGAGGCCTGTTGGAACGCATTGCCATGGGAAAAAAGCAGCCTATGATGACAGCCGCGAGAAGCTCTTAGCCAAGAAGAAATTGTTCATCGCCTCCATAGTCTGTCTGGTTTTCATGATTGGAGAAGTTATAGGTGGTTATCTAGCACACAGTCTGGCCATTATGACCGATGCAGCCCACCTTCTGACAGATTTTGGCAGTATGATGGTCAGTCTCTTCTCCTTGTGGATCTCCTCAAGACCACCCACCAAGATCATGAACTTCGGCTGGCACAGATCAGAGATTCTGGGAGCCCTGATATCTGTAATGTCCATCTGGATCGTGACTGGTGTGTTGGTGTATCTTGCCATTGAGAGGATAGTGAAAAATGATTATGAAATCGAAGGCCGTGTGATGCTTCTCACCTCAGGATGTGCAGTCGTGGTCAACATCATAATGGCCTACATTCTGCACCACTCCACAACCTTCCACAGTCACGGGTCAGGCTACCACAAGATTGATGAGAGCGGGATGAGTCCTGTGGGCCACGGTCACTCGCACAGCCTCCTGGGGAATCATGGCAACACCAGCGTCAGAGCGGCTTTTATTCATGTGTTGGGGGATCTTCTGCAGAGCTTTGGAGTGATGGTGGCTGCTATTATAATCTACTTCAGGCCAGAATACAAAATAGCCGATCCCATTTGCACTTTCCTCTTTTCTGTGTTCGTCCTGGCCACCACCCTCACCATCCTAAGAGACGTCTTCCGCATTCTCATGGAGgGGGCGCCTAAAGGAATCCAGTTTAATTCAGTGAAGGAGGTGTTGCTGTCTCTGAAGGCGGTGAAGGCCATGCACAGTCTGCATCTGTGGGCTCTCACTCTTAGCCAGAGTCTGCTATCTGTTCACATAGCCATCGagGAGAACGCAGACCCTCAGAGTGTCTTAAAGGAAGCCACTGAACTCCTCCAGACCAAATTCGGCTTCTACAGCACAACCATTCAAGTGGAGCCTTACAGCGAGGACATGATCCACTGCACCCAGTGCCAGGACCCCATGGACTAAATTCTGCAGCACACCGGTGAGACGAGGCTGCCTCCAAAACATGTATGCACACCTATTAAAGCTTCATTGAGGGTCCAAGCCA
>TCONS_00035993
ATCTGAGCTCACCCACAGCCAAGTTCTCCGGCTCCGCATACAGACAGCATCGGAATAACTGACTGACCGCAATCCTGCCATTTTCTTTAGCTTTGTGGATTTGATGCAATGAGTGAATTAACTCATTTGTTGAACCCTTCGAAAATGGCTTGGAGGAATTATTATTTTGCCGTCTAATTAAACACGCATATTTTAATATTCGGTAAGGTTTTCATTAATTGTGCTTTTTATTTACCTGAAGCAGCAGCACAGGACTATGGATCCTCCACCGAGTTCGGAGAAATCGCATCTTATCAATGAAAGAAATGCCAAAATATACTCCTTAAAACTTAACAGTGAATTCTCAGGATCCAAAGAAAGTTGCCCAAACCTGCCTTTGGGAAATGGTGAAATGGCTGGTGCTATTGAGCTCAAGAGGCCTGTTGGAACGCATTGCCATGGGAAAAAAGCAGCCTATGATGACAGCCGCGAGAAGCTCTTAGCCAAGAAGAAATTGTTCATCGCCTCCATAGTCTGTCTGGTTTTCATGATTGGAGAAGTTATAGGTGGTTATCTAGCACACAGTCTGGCCATTATGACCGATGCAGCCCACCTTCTGACAGATTTTGGCAGTATGATGGTCAGTCTCTTCTCCTTGTGGATCTCCTCAAGACCACCCACCAAGATCATGAACTTCGGCTGGCACAGATCAGAGATTCTGGGAGCCCTGATATCTGTAATGTCCATCTGGATCGTGACTGGTGTGTTGGTGTATCTTGCCATTGAGAGGATAGTGAAAAATGATTATGAAATCGAAGGCCGTGTGATGCTTCTCACCTCAGGATGTGCAGTCGTGGTCAACATCATAATGGCCTACATTCTGCACCACTCCACAACCTTCCACAGTCACGGGTCAGGCTACCACAAGATTGATGAGAGCGGGATGAGTCCTGTGGGCCACGGTCACTCGCACAGCCTCCTGGGGAATCATGGCAACACCAGCGTCAGAGCGGCTTTTATTCATGTGTTGGGGGATCTTCTGCAGAGCTTTGGAGTGATGGTGGCTGCTATTATAATCTACTTCAGGCCAGAATACAAAATAGCCGATCCCATTTGCACTTTCCTCTTTTCTGTGTTCGTCCTGGCCACCACCCTCACCATCCTAAGAGACGTCTTCCGCATTCTCATGGAGgGGGCGCCTAAAGGAATCCAGTTTAATTCAGTGAAGGAGGTGTTGCTGTCTCTGAAGGCGGTGAAGGCCATGCACAGTCTGCATCTGTGGGCTCTCACTCTTAGCCAGAGTCTGCTATCTGTTCACATAGCCATCGagGAGAACGCAGACCCTCAGAGTGTCTTAAAGGAAGCCACTGAACTCCTCCAGACCAAATTCGGCTTCTACAGCACAACCATTCAAGTGGAGCCTTACAGCGAGGACATGATCCACTGCACCCAGTGCCAGGACCCCATGGACTAAATTCTGCAGCACACCGGTGAGACGAGGCTGCCTCCAAAACATGTATGCACACCTATTAAAGCTTCATTGAGGGTCCAAGCCA
>TCONS_00035994
ATGGCTGGTGCTATTGAGCTCAAGAGGCCTGTTGGAACGCATTGCCATGGGAAAAAAGCAGCCTATGATGACAGCCGCGAGAAGCTCTTAGCCAAGAAGAAATTGTTCATCGCCTCCATAGTCTGTCTGGTTTTCATGATTGGAGAAGTTATAGGTGGTTATCTAGCACACAGTCTGGCCATTATGACCGATGCAGCCCACCTTCTGACAGATTTTGGCAGTATGATGGTCAGTCTCTTCTCCTTGTGGATCTCCTCAAGACCACCCACCAAGATCATGAACTTCGGCTGGCACAGATCAGAGATTCTGGGAGCCCTGATATCTGTAATGTCCATCTGGATCGTGACTGGTGTGTTGGTGTATCTTGCCATTGAGAGGATAGTGAAAAATGATTATGAAATCGAAGGCCGTGTGATGCTTCTCACCTCAGGATGTGCAGTCGTGGTCAACATCATTCACGGGTCAGGCTACCACAAGATTGATGAGAGCGGGATGAGTCCTGTGGGCCACGGTCACTCGCACAGCCTCCTGGGGAATCATGGCAACACCAGCGTCAGAGCGGCTTTTATTCATGTGTTGGGGGATCTTCTGCAGAGCTTTGGAGTGATGGTGGCTGCTATTATAATCTACTTCAGGCCAGAATACAAAATAGCCGATCCCATTTGCACTTTCCTCTTTTCTGTGTTCGTCCTGGCCACCACCCTCACCATCCTAAGAGACGTCTTCCGCATTCTCATGGAGgGGGCGCCTAAAGGAATCCAGTTTAATTCAGTGAAGGAGGTGTTGCTGTCTCTGAAGGCGGTGAAGGCCATGCACAGTCTGCATCTGTGGGCTCTCACTCTTAGCCAGAGTCTGCTATCTGTTCACATAGCCATCGACCCTCAGAGTGTCTTAAAGGAAGCCACTGAACTCCTCCAGACCAAATTCGGCTTCTACAGCACAACCATTCAAGTGGAGCCTTACAGCGAGGACATGATCCACTGCACCCAGTGCCAGGACCCCATGGACTAA

Function

symbol description
slc30a2 Predicted to enable zinc ion transmembrane transporter activity. Predicted to be involved in regulation of sequestering of zinc ion; response to zinc ion; and zinc ion transmembrane transport. Predicted to act upstream of or within zinc ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in hindbrain; neurons; and spinal cord. Orthologous to several human genes including SLC30A3 (solute carrier family 30 member 3).

GO:

id name namespace
GO:0071577 zinc ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0006829 zinc ion transport biological_process
GO:0061088 regulation of sequestering of zinc ion biological_process
GO:0010043 response to zinc ion biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0005385 zinc ion transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-041014-347 Predicted to enable zinc ion transmembrane transporter activity. Predicted to be involved in regulation of sequestering of zinc ion; response to zinc ion; and zinc ion transmembrane transport. Predicted to act upstream of or within zinc ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in hindbrain; neurons; and spinal cord. Orthologous to several human genes including SLC30A3 (solute carrier family 30 member 3).

Ensembl:

ensembl_id ENSDARG00000021305

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035992 False 1180 mRNA 0.50 7 38595935 38610396
TCONS_00035993 False 1535 mRNA 0.48 8 38595935 38617766
TCONS_00035994 True 1011 mRNA 0.50 7 38596017 38610360

Neighbor

gene id symbol gene type direction distance location
XLOC_018280 si:ch211-245h14.1 coding downstream 70468 38517441 ~ 38525467 (-)
XLOC_018279 BX569783.1 coding downstream 87414 38504733 ~ 38508521 (-)
XLOC_018278 itpkb coding downstream 146032 38386282 ~ 38449903 (-)
XLOC_018277 NA coding downstream 222841 38358361 ~ 38373094 (-)
XLOC_018276 NA coding downstream 350974 38243292 ~ 38244961 (-)
XLOC_018282 NA coding upstream 46998 38664764 ~ 38671060 (-)
XLOC_018283 trim54 coding upstream 112525 38730291 ~ 38758797 (-)
XLOC_018284 dnajc5ga coding upstream 146187 38763953 ~ 38787341 (-)
XLOC_018285 cad coding upstream 170553 38788319 ~ 38827623 (-)
XLOC_018286 si:dkey-221h15.4 coding upstream 213822 38831588 ~ 38836161 (-)
XLOC_017928 CU539064.1 misc downstream 28542234 10053405 ~ 10053701 (-)
XLOC_018274 NA non-coding downstream 455319 38127897 ~ 38140616 (-)
XLOC_018288 dre-mir-124-2 non-coding upstream 287765 38905531 ~ 38905613 (-)
XLOC_018289 BX569784.1 non-coding upstream 415055 39032821 ~ 39032936 (-)
XLOC_018296 NA non-coding upstream 758117 39375883 ~ 39502967 (-)
XLOC_018298 NA non-coding upstream 786443 39404209 ~ 39404969 (-)

Expression


Co-expression Network