XLOC_018283 (trim54)


Basic Information

Item Value
gene id XLOC_018283
gene name trim54
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 38730291 ~ 38758797 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035995
ACTCTACGGTTGGCGATTGATTGGGCATCTGGATGAAGACTGGCACTGCTGGAGAATAACAGAAGGAAAGGAAGTTTAGGATCTTAAGCTATTGACTGAATTTGGTGTCCAAATGAACTTCACTTTGGGCTTCAAACCGTCGATCGGAGATTCCAGCTCAATGGAGAACTTGGAGAGGCAACTGATTTGCCCCATCTGTCTGGAGATATTCAGCAAGCCTGTCGTCATTTTACCCTGCCAGCACAATCTCTGCAGGAAGTGTGCCAATGATGTTTTCCAGGCCTCCAACCCTCTTTGGCAAAACCGGGCCTCAACCACTGTGTCCACAGGGGGGCGTTTCCGCTGCCCATCATGTCGCCATGAGGTGGTTTTGGATCGGCATGGTGTCTACGGCCTTCAGAGAAATCTGCTAGTGGAGAATATCATAGATATCTACAAATCAGAATCCACCAGGCCCCTCCTGCCCaagacagagcagcagcagctGATGTGTGACCAGCATGAGGAGGAGAAGATCAACATCTACTGTCTGACCTGTGAAACGCCGACATGCTCCATGTGCAAAGTGTTTGGGGCTCACAAAGACTGTGATGTGGCCCCGCTGCCGGTCATTTACAAGAAGCAGAAGACAGAGCTAAGTGATGCTATTGCCATCTTGGTGGCCGGAAATGACAGCATACAGGCTCTGATCTCACAGATGGAGGATATTTGTAGGAGCATCAAGGACAATGGTCGGCGGCAGATACAGCACATATCTGACAAGTTTGATGAACTTTACGCCATTCTAGAAGAGCGTAAAAGAGAACTAATCGAGACTGTTGGTTGTGAGCAAGACCGAAAACTGGGTCATGTTCGATCACTAATTCGTCGCCACGGAGATCACTTAGAGATGTCTGTCAAACTGGTGGAGACAGCCATTCAGTCCATGGAGGAGCCTCAGATGGCTGTATTCCTGCAGAGCACGAAGGATGTGTTTAAAAAGATCACAGACACAGCCAAGGCCTCCAACATTGAGCGGACGGAGGTGGGTTACGAGAGCATGGCCCACTTCATCATCAACACGGAGGATGTGGCCAACATGCTGAGACATATCAACTTCCGGACAGGTAAAGATGAGGAAGACAGTGGTGATGAAGCTCCTGAAGGCCTGACTACCTCAACTGGTCAAAGTGGTGAATCAGGGACGCGCTAACTTATGTTTAAACCCAAGGATATTTCCAGGATAAGAGAGAGTGGAAGGAGGAGGTTTTGGGTAATCCTTTCAGCACGGCGAGAGCTTCTTTCATCTGCCTGTTTTGTGGTCCTAAGACTCTGAGTTCAGTAAGAGGAATCACACTTTTACTTCATAGCTTCCATATTTTGGGTGTTTATGATGCCATTTTTAGACTTTTGATCCTATTATTGCAGTTGGTAGCACTTAAAATCATAAATGAACCCAGAAAACGTTTATGTGGGATAAATATGTGAGGTCTCAAAAAGATTTTGTATTGTATAGCACAATAAACACAAGTGTCTACTGTAA
>TCONS_00035996
CTCCCTTCAGCAGCTACCAGATGAACAATGACTAAACCTACCAGCCTTTCCCAATAGAAAACCATGTGCACGGTGGACACCATATGTCCGTCTGTTATCTGCAGTGTTTCTATGCTGAAGACAGAGCTAAGTGATGCTATTGCCATCTTGGTGGCCGGAAATGACAGCATACAGGCTCTGATCTCACAGATGGAGGATATTTGTAGGAGCATCAAGGACAATGGTCGGCGGCAGATACAGCACATATCTGACAAGTTTGATGAACTTTACGCCATTCTAGAAGAGCGTAAAAGAGAACTAATCGAGACTGTTGGTTGTGAGCAAGACCGAAAACTGGGTCATGTTCGATCACTAATTCGTCGCCACGGAGATCACTTAGAGATGTCTGTCAAACTGGTGGAGACAGCCATTCAGTCCATGGAGGAGCCT

Function

symbol description
trim54 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in Z disc. Predicted to be active in cytoplasm. Is expressed in gill; male organism; and muscle. Orthologous to human TRIM54 (tripartite motif containing 54).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-041014-342 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in Z disc. Predicted to be active in cytoplasm. Is expressed in gill; male organism; and muscle. Orthologous to human TRIM54 (tripartite motif containing 54).

Ensembl:

ensembl_id ENSDARG00000029907

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035995 False 1522 mRNA 0.47 9 38730291 38758797
TCONS_00035996 True 429 mRNA 0.47 3 38743553 38746889

Neighbor

gene id symbol gene type direction distance location
XLOC_018282 NA coding downstream 59231 38664764 ~ 38671060 (-)
XLOC_018281 slc30a2 coding downstream 112525 38595935 ~ 38617766 (-)
XLOC_018280 si:ch211-245h14.1 coding downstream 204824 38517441 ~ 38525467 (-)
XLOC_018279 BX569783.1 coding downstream 221770 38504733 ~ 38508521 (-)
XLOC_018278 itpkb coding downstream 280388 38386282 ~ 38449903 (-)
XLOC_018284 dnajc5ga coding upstream 5156 38763953 ~ 38787341 (-)
XLOC_018285 cad coding upstream 29522 38788319 ~ 38827623 (-)
XLOC_018286 si:dkey-221h15.4 coding upstream 72791 38831588 ~ 38836161 (-)
XLOC_018287 BX511178.2 coding upstream 133438 38892235 ~ 38917372 (-)
XLOC_018288 dre-mir-124-2 coding upstream 146734 38905531 ~ 38905613 (-)
XLOC_017928 CU539064.1 misc downstream 28676590 10053405 ~ 10053701 (-)
XLOC_018277 NA non-coding downstream 357197 38358361 ~ 38373094 (-)
XLOC_018276 NA non-coding downstream 485330 38243292 ~ 38244961 (-)
XLOC_018274 NA non-coding downstream 589675 38127897 ~ 38140616 (-)
XLOC_018289 BX569784.1 non-coding upstream 274024 39032821 ~ 39032936 (-)
XLOC_018296 NA non-coding upstream 617086 39375883 ~ 39502967 (-)
XLOC_018298 NA non-coding upstream 645412 39404209 ~ 39404969 (-)
XLOC_018299 NA non-coding upstream 652047 39410844 ~ 39414258 (-)

Expression


Co-expression Network