XLOC_001829 (brap)


Basic Information

Item Value
gene id XLOC_001829
gene name brap
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 3336772 ~ 3359189 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003645
attttgaaatgcttatTTGTCGCGGAAGCAGCAGCGCAGTTATTTATCTTTCATTCTCAGACGTCACTGCTCTTTTCCTTctaaagataaacaataatacatttaataatcgTTTATGGCATGTAGTTCTGCTATAAGAGCTATATCAAGggtcgtatttttgttttgtgtctaCAGGAGCAGTGTTGTGTTGAGTTGTGCTGCTTGTTGTGATATTTTTGTGTACCGCTGAACACATGAGTGTGTCTCTGGTTGTGATCAGACTCGAGCTCGCCGATCAGTCTGATTCTCCGCAGGGTTTTCACTACTGCGCCGTGTCAGAGATGTCTGAGGACGAGATGAGAGAGAAAGCTCTGGGTTCTGCGAAAGCCACGCTGGGTGGAAAAACGGACCTGGAGCGAGGAGCGATCCTCCATCAGCACCTAGGCAGCCGCGTCATGAGCGACATGGTGATCGAGACCTTTCAGCCCAGCACAGGAGCTGAGGAAGGTAAAGAAGGTGACGTCAGCCAGACAGATGTGAACATGACACCCGACTCTCCCTCCAAACAGCTGCCGGATCAGATCTCCTTTTTCAGTGGAAACCCATCGGTGGAGATCGTCCACGGCATCATGCACCTCTACAAAACTAATAAGATGACGTCACTAACGGAGGATGTGAGGCGGAGTGCGATGCTGTGTATCCTCACGGTACCCACCACCATGACCAGCCATGACCTCATGAAGTTCGTGGCTCCCTACAATGATGTCATGGAGCACATGAAGATTATCCGGGATTCCACGCCAAACCAGTACATGGTGCTGGTCAAGTTCAGGAGTCAGGCTGATGCCGACAGCTTCTACACAACGTGCAACGGCCGTCAGTTCAACTCCATTGAGGATGCCGTCTGCCAGTTGGTCTATGTGGAGAGAGCGGAAGTCATCAAATCTGAAGAGGGGGCCAGTTTACCTGTGATGGATCTGACGGAGCTGCCCAAGTGTACCGTGTGTTTGGAGCGCATGGACGAGTCAGTCAACGGCGTGTTGACCACTTTATGCAACCACAGCTTCCACAGCCAGTGTCTGCAGAGATGGGAAGATGCATCGTGTCCTGTGTGCAGATACTGTCAAACTCCTGAACCCGTCGAGGAAAACAAGTGTTTCGAGTGTGGCGTTCAAGAGAATCTGTGGATCTGTCTCATCTGCGGTCACATCGGCTGCGGACGTTACGTCAGTCGTCATGCTTACAAGCACTTTGAGGAAACGCAGCACACTTACGCCAtgcagctgaccaatcacagggTCTGGGACTATGCTGGAGATAACTACGTTCATCGGCTTGTTGCTAGTAAAACCGACGGGAAGATGGTGCAGTACGAGTGTGAGGGAGACACGTGTCAGGATGAGAAGATCGATGCGCTGCAGctcgagtattcatatttattaaccAGTCAGCTGGAGTCTCAGCGCATATACTGGGAGAATAAAATCGTTCATCTGGAAAAAGACACAGCAGAAGAGATCAACAACATGAAGGCCAAATTCAAGGAGACCATCGACAAGTGTGACAGTCTGGAGCGCAAACTCAACGAACTCGCCAAAGACAAACAGTCTATCGACAAGAAATGTTCCCAGCTGAACAATAAAGTGGCGAAGCTCAGTCAGGAGCTGCGGGAGGAGCAGGAGATGAACCGATGCCTGCGAGCCAATCAGACGCAGCTCCAGGCGCAGCTGCAGGAGGAGGAGAGGCGGGTCCAGGACACGGCGGCCAATAAGGACGGCCAGATCGCAGAGCTCCAGGAGCAGCTGAGAGATGTGATGTTCTACCTGGAGACGCAGCAGCAGATCGACCGCATGCCGGCAGACACGCGGCAGGAGATCCAGGAGGGCCAGATCAACATCGCCTCGGCCCCTGCAGCCCCGCAGCCTGGACCCTCAGCACACGGATCCGGAAAACTGACCGGACGTAAAGGACGATCCAAGAGGGGAAAGTagcaacaacaact
>TCONS_00005672
aagataaacaataatacatttaataatcgTTTATGGCATGTAGTTCTGCTATAAGAGCTATATCAAGggtcgtatttttgttttgtgtctaCAGGAGCAGTGTTGTGTTGAGTTGTGCTGCTTGTTGTGATATTTTTGTGTACCGCTGAACACATGAGTGTGTCTCTGGTTGTGATCAGACTCGAGCTCGCCGATCAGTCTGATTCTCCGCAGGGTTTTCACTACTGCGCCGTGTCAGAGATGTCTGAGGACGAGATGAGAGAGAAAGCTCTGGGTTCTGCGAAAGCCACGCTGGGTGGAAAAACGGACCTGGAGCGAGGAGCGATCCTCCATCAGCACCTAGGCAGCCGCGTCATGAGCGACATGGTGATCGAGACCTTTCAGCCCAGCACAGGTTTGCATCGCAAGTAGACACATGCCGATAATCAGTATATAGGGATAATCAACATGGACAATATTGATATTGCGGGGACTTCAAAATGccgtaaataattatttattatttaacaaaaagtgGTTGGAGACTTAATTAGTTAGCTTAAgagatgttttaattatttagtccTCCTGTGAAAA

Function

symbol description
brap Predicted to enable nucleic acid binding activity and zinc ion binding activity. Is expressed in lens. Orthologous to human BRAP (BRCA1 associated protein).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04014 Ras signaling pathway
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040718-168 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Is expressed in lens. Orthologous to human BRAP (BRCA1 associated protein).

Ensembl:

ensembl_id ENSDARG00000008560

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003645 False 1984 mRNA 0.52 12 3336772 3359189
TCONS_00005672 True 576 lncRNA 0.43 2 3336855 3341616

Neighbor

gene id symbol gene type direction distance location
XLOC_001828 zgc:56235 coding upstream 14434 3299829 ~ 3322338 (+)
XLOC_001827 NA coding upstream 66954 3262578 ~ 3269818 (+)
XLOC_001826 hic2 coding upstream 180815 3145707 ~ 3155957 (+)
XLOC_001825 ckmt2a coding upstream 206885 3111004 ~ 3129887 (+)
XLOC_001824 rasgrf2a coding upstream 230010 3049636 ~ 3106762 (+)
XLOC_001830 CU570980.1 coding downstream 49594 3408783 ~ 3408900 (+)
XLOC_001831 ptpn11a coding downstream 69005 3428194 ~ 3455639 (+)
XLOC_001832 rph3aa coding downstream 148672 3507861 ~ 3510876 (+)
XLOC_001833 pla2g3 coding downstream 161067 3520256 ~ 3532997 (+)
XLOC_001834 NA coding downstream 497878 3857067 ~ 3857885 (+)
XLOC_001823 NA non-coding upstream 357268 2977535 ~ 2979504 (+)
XLOC_001815 FP085363.1 non-coding upstream 648091 2688565 ~ 2688681 (+)
XLOC_001807 NA non-coding upstream 832730 2499533 ~ 2504042 (+)
XLOC_001806 NA non-coding upstream 898864 2402308 ~ 2437908 (+)
XLOC_001839 NA non-coding downstream 930516 4289705 ~ 4299850 (+)
XLOC_001840 NA non-coding downstream 955774 4314963 ~ 4318863 (+)
XLOC_001841 NA non-coding downstream 976003 4335192 ~ 4341646 (+)

Expression


Co-expression Network